Ggra7741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7741.t1
Unique NameGgra7741.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:310989..311708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog164328.Phyra85459
PFAMsRibosomal_S9
Max annot lvl4776|Peronosporales
KEGG koko:K02996
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue2.84e-43
EggNOG OGsCOG0103@1|root,KOG1697@2759|Eukaryota,3QARS@4776|Peronosporales
DescriptionRibosomal protein S9/S16
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7741Ggra7741Gracilaria gracilis GNS1m malegenetig00000088_pilon 310989..311708 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7741.t1.start1Ggra7741.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 310989..310991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7741.t1.CDS1Ggra7741.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 310989..311708 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7741.t1.exon1Ggra7741.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 310989..311708 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7741.t1.stop1Ggra7741.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 311706..311708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7741.t1Ggra7741.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 310989..311708 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7741.t1 ID=Ggra7741.t1|Name=Ggra7741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=240bp
MFRVAIRAANQGYGTALELYSLNFLGSRAWWTSRSFIHVSSTAQKDSQVK
GTPSSTENSESSEVLKFPDPIDPTQNPLAELAAEDVKTAEKYWKKVQSSQ
QRPEYHQKLNEYGEAYAIGRRKRSSAKIWLTDGEGRIAINGRSWVEYFPR
LYHRDKVLKPLDLVELIGKMDIKCDVRGGGANGQAEAIRHGIARALQNWD
PNMRPTLKANGLLTRDSRVVEPKKYGRKKARKSFQWVKR*
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spliced messenger RNA

>Ggra7741.t1 ID=Ggra7741.t1|Name=Ggra7741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000088_pilon:310989..311708+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGCGTGGCCATTAGAGCAGCAAATCAAGGGTATGGGACTGCTCT
TGAGCTGTATTCACTGAACTTTCTAGGTTCAAGAGCGTGGTGGACATCGA
GATCTTTCATTCATGTCTCGAGTACAGCACAAAAAGATTCTCAGGTAAAA
GGCACTCCTTCTTCTACTGAAAACTCAGAAAGCTCCGAAGTGCTAAAATT
TCCTGATCCGATCGATCCAACACAAAATCCTCTTGCAGAACTAGCAGCAG
AAGACGTGAAGACAGCCGAGAAGTATTGGAAAAAAGTGCAATCCAGTCAA
CAACGACCAGAGTATCATCAGAAACTGAATGAGTACGGTGAAGCATACGC
AATTGGGCGTCGAAAGCGAAGTAGTGCTAAGATCTGGTTAACAGATGGGG
AAGGACGGATAGCTATAAACGGTCGTTCATGGGTGGAATACTTTCCGCGT
TTATATCATCGGGACAAAGTCCTTAAGCCATTAGATTTGGTCGAATTGAT
AGGGAAGATGGACATCAAATGCGATGTGAGAGGAGGTGGTGCGAATGGAC
AGGCAGAAGCTATTCGTCACGGAATAGCGCGAGCCCTGCAAAACTGGGAT
CCTAATATGCGTCCAACGCTGAAAGCAAACGGTCTGCTAACAAGAGACAG
TCGTGTGGTTGAGCCAAAAAAGTATGGCAGGAAGAAGGCTCGGAAGTCCT
TCCAATGGGTGAAGCGATAA
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protein sequence of Ggra7741.t1

>Ggra7741.t1 ID=Ggra7741.t1|Name=Ggra7741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=240bp
MFRVAIRAANQGYGTALELYSLNFLGSRAWWTSRSFIHVSSTAQKDSQVK
GTPSSTENSESSEVLKFPDPIDPTQNPLAELAAEDVKTAEKYWKKVQSSQ
QRPEYHQKLNEYGEAYAIGRRKRSSAKIWLTDGEGRIAINGRSWVEYFPR
LYHRDKVLKPLDLVELIGKMDIKCDVRGGGANGQAEAIRHGIARALQNWD
PNMRPTLKANGLLTRDSRVVEPKKYGRKKARKSFQWVKR*
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mRNA from alignment at tig00000088_pilon:310989..311708+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7741.t1 ID=Ggra7741.t1|Name=Ggra7741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=720bp|location=Sequence derived from alignment at tig00000088_pilon:310989..311708+ (Gracilaria gracilis GNS1m male)
ATGTTTCGCGTGGCCATTAGAGCAGCAAATCAAGGGTATGGGACTGCTCT
TGAGCTGTATTCACTGAACTTTCTAGGTTCAAGAGCGTGGTGGACATCGA
GATCTTTCATTCATGTCTCGAGTACAGCACAAAAAGATTCTCAGGTAAAA
GGCACTCCTTCTTCTACTGAAAACTCAGAAAGCTCCGAAGTGCTAAAATT
TCCTGATCCGATCGATCCAACACAAAATCCTCTTGCAGAACTAGCAGCAG
AAGACGTGAAGACAGCCGAGAAGTATTGGAAAAAAGTGCAATCCAGTCAA
CAACGACCAGAGTATCATCAGAAACTGAATGAGTACGGTGAAGCATACGC
AATTGGGCGTCGAAAGCGAAGTAGTGCTAAGATCTGGTTAACAGATGGGG
AAGGACGGATAGCTATAAACGGTCGTTCATGGGTGGAATACTTTCCGCGT
TTATATCATCGGGACAAAGTCCTTAAGCCATTAGATTTGGTCGAATTGAT
AGGGAAGATGGACATCAAATGCGATGTGAGAGGAGGTGGTGCGAATGGAC
AGGCAGAAGCTATTCGTCACGGAATAGCGCGAGCCCTGCAAAACTGGGAT
CCTAATATGCGTCCAACGCTGAAAGCAAACGGTCTGCTAACAAGAGACAG
TCGTGTGGTTGAGCCAAAAAAGTATGGCAGGAAGAAGGCTCGGAAGTCCT
TCCAATGGGTGAAGCGATAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:310989..311708+

>Ggra7741.t1 ID=Ggra7741.t1|Name=Ggra7741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=720bp|location=Sequence derived from alignment at tig00000088_pilon:310989..311708+ (Gracilaria gracilis GNS1m male)
ATGTTTCGCGTGGCCATTAGAGCAGCAAATCAAGGGTATGGGACTGCTCT
TGAGCTGTATTCACTGAACTTTCTAGGTTCAAGAGCGTGGTGGACATCGA
GATCTTTCATTCATGTCTCGAGTACAGCACAAAAAGATTCTCAGGTAAAA
GGCACTCCTTCTTCTACTGAAAACTCAGAAAGCTCCGAAGTGCTAAAATT
TCCTGATCCGATCGATCCAACACAAAATCCTCTTGCAGAACTAGCAGCAG
AAGACGTGAAGACAGCCGAGAAGTATTGGAAAAAAGTGCAATCCAGTCAA
CAACGACCAGAGTATCATCAGAAACTGAATGAGTACGGTGAAGCATACGC
AATTGGGCGTCGAAAGCGAAGTAGTGCTAAGATCTGGTTAACAGATGGGG
AAGGACGGATAGCTATAAACGGTCGTTCATGGGTGGAATACTTTCCGCGT
TTATATCATCGGGACAAAGTCCTTAAGCCATTAGATTTGGTCGAATTGAT
AGGGAAGATGGACATCAAATGCGATGTGAGAGGAGGTGGTGCGAATGGAC
AGGCAGAAGCTATTCGTCACGGAATAGCGCGAGCCCTGCAAAACTGGGAT
CCTAATATGCGTCCAACGCTGAAAGCAAACGGTCTGCTAACAAGAGACAG
TCGTGTGGTTGAGCCAAAAAAGTATGGCAGGAAGAAGGCTCGGAAGTCCT
TCCAATGGGTGAAGCGATAA
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