Ggra7733.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7733.t1
Unique Name	Ggra7733.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	737

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:184876..187086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK043CT
PFAMs	Myb_DNA-binding
Max annot lvl	2759\|Eukaryota
Evalue	3.44e-22
EggNOG OGs	KOG0724@1\|root,KOG0724@2759\|Eukaryota
Description	ubiquitin modification-dependent histone binding
COG category	K

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7733	Ggra7733	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 184876..187086 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7733.t1.start1	Ggra7733.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 184876..184878 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7733.t1.CDS1	Ggra7733.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 184876..187086 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7733.t1.exon1	Ggra7733.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 184876..187086 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7733.t1.stop1	Ggra7733.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 187084..187086 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7733.t1	Ggra7733.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 184876..187086 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:184876..187086+
coding sequence from alignment at tig00000088_pilon:184876..187086+

mRNA sequence

>Ggra7733.t1 ID=Ggra7733.t1|Name=Ggra7733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=737bp
MSGIAHLSSAPLSAAPPPSTVQPAPHPPPHPPHPPPRPPPQLHITVPVMP
HPGPLWMDPASAVAVAAPQPIHYFPVAHTAPQLPPKQPTPSQDPPVPRPR
KPYTATKVREMWSASEHQRMLEGLRLFKRDWAKVTEHVGTRSTAQVRSHA
QKYFDKVAREKTDDYVPRARPKRKSATPYPRKVREHPPTSAHMPTATTVH
PNTHTATSIPPAAATHPHPAHPQAYAIPVQQLHPAVAATHAVQPPTTIHP
APMHVQYAAPPSTFVPQLQPSSYVAQQQPQISIQQQPPTPTMFSPYLNIC
PTQSPNLQRSNFDSSVQPSPVSFVSGHAYTAQSPAPQPQHVPVAHSVFNL
FSPLTPGAYASVARSPSMAHAPTSIVPIAQVQQPIAHHSHVHSHPEGPLP
NCAKCNALRRYGGVLQEIVQFGGSQSIPAPQVAHSNQAVRWQPIHQTQQR
SSKLEPDGNTTKLNQATDSTACATVQEQSDSTSGKKSVDDSLPSFKDSRK
TGTMSPIPTKSRAHRSKLSKSKKIIAKRISVDHVNNNVSSGEMSESDNFS
RINPLSTDISKPDRPGDSNLERKKKTKSSLLRSKKRKSCQSGSSGLPGKN
NSDNFQRRSKKIKCVPIAPTPNVANNVAKRPRVESAPKPDQLLAPRISPA
PETNEAYKTAEERDEDKTAMNNGSPAPNSPKLESESDIGSPRVETYSPKE
QKEIFDAVHSLQILSRTPSSSSPSQSESKTDSENEN*

spliced messenger RNA

>Ggra7733.t1 ID=Ggra7733.t1|Name=Ggra7733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00000088_pilon:184876..187086+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGCATCGCCCACCTCTCCAGCGCGCCACTGTCCGCCGCCCCGCC
ACCTTCTACCGTCCAGCCCGCCCCCCATCCTCCGCCTCACCCCCCTCACC
CACCGCCCCGCCCGCCTCCGCAGCTGCACATCACCGTTCCTGTCATGCCG
CATCCCGGTCCGCTTTGGATGGATccggcgtccgccgtcgccgtcgccgc
cccacagccCATCCACTACTTCCCCGTCGCGCATACGGCGCCGCAACTCC
CCCCGAAACAGCCCACTCCGTCGCAAGATCCGCCCGTGCCGCGCCCGCGC
AAGCCGTACACCGCCACCAAGGTGCGTGAGATGTGGAGCGCCAGTGAGCA
CCAACGTATGTTGGAGGGCCTCCGCCTCTTCAAGCGCGACTGGGCAAAGG
TTACCGAGCATGTTGGTACCCGATCTACCGCACAGGTTCGCTCGCACGCT
CAGAAATACTTTGACAAGGTCGCGCGCGAGAAGACCGATGATTATGTGCC
AAGGGCGCGCCCGAAGAGAAAGTCTGCCACCCCCTATCCGAGAAAAGTTC
GTGAACATCCCCCGACTTCAGCTCACATGCCTACTGCTACCACTGTTCAT
CCCAACACCCATACCGCCACATCCATCCCGCCTGCAGCTGCTACCCATCC
CCATCCAGCCCATCCGCAGGCCTATGCTATTCCAGTTCAACAGCTCCATC
CAGCAGTTGCTGCAACTCATGCCGTTCAACCCCCCACCACCATTCACCCA
GCCCCAATGCACGTGCAATACGCTGCACCACCATCAACCTTTGTGCCTCA
ATTGCAACCCTCATCTTACGTTGCACAACAACAACCGCAGATTTCAATAC
AACAACAACCGCCGACTCCTACTATGTTTTCTCCTTATTTGAACATTTGT
CCCACTCAATCACCAAATCTTCAAAGATCCAACTTCGACTCCTCTGTGCA
ACCGTCCCCCGTGTCGTTTGTTAGCGGGCATGCATATACAGCACAGTCAC
CTGCTCCACAACCACAGCACGTACCCGTTGCCCATTCTGTCTTCAACCTC
TTCTCCCCACTTACACCTGGTGCCTATGCTTCTGTTGCTCGGTCACCCTC
CATGGCTCACGCACCCACTTCCATTGTTCCGATCGCTCAAGTGCAGCAGC
CAATTGCTCACCATTCGCATGTACACTCACATCCAGAGGGTCCGCTTCCT
AACTGTGCAAAATGCAACGCATTGAGACGATATGGTGGGGTCTTACAGGA
GATTGTTCAGTTTGGAGGTTCTCAATCTATACCGGCTCCCCAGGTTGCTC
ATTCCAATCAAGCTGTGCGGTGGCAACCAATTCACCAAACCCAGCAGAGG
AGCTCAAAGTTGGAACCAGATGGTAACACCACCAAACTCAATCAAGCAAC
TGACAGTACTGCATGTGCTACAGTTCAAGAGCAGTCCGATTCGACCTCAG
GCAAGAAGAGTGTTGACGACTCGTTACCATCGTTCAAAGATAGTAGAAAG
ACTGGAACAATGTCGCCCATCCCGACCAAGAGTCGAGCGCATCGTTCCAA
GTTATCCAAATCGAAGAAGATCATCGCGAAGCGTATCTCTGTTGATCACG
TGAATAACAATGTGTCGAGTGGTGAAATGTCTGAATCAGACAACTTTTCC
AGGATTAATCCACTCTCTACGGATATCAGCAAGCCAGATAGGCCAGGTGA
TTCCAATCTTGAGAGAAAGAAGAAGACAAAATCATCTCTGCTCAGGTCAA
AGAAACGGAAGAGCTGCCAGAGTGGATCATCAGGACTCCCTGGAAAGAAC
AATTCAGACAATTTTCAGCGGAGATCGAAGAAGATCAAGTGTGTGCCGAT
TGCCCCCACACCGAATGTCGCAAATAATGTTGCAAAGAGACCACGAGTCG
AATCGGCACCCAAGCCGGATCAATTGTTGGCACCCCGGATTAGTCCCGCT
CCGGAAACAAACGAAGCCTACAAGACAGCAGAAGAACGGGACGAGGACAA
AACAGCAATGAATAATGGATCACCCGCTCCGAATAGTCCCAAACTCGAAT
CCGAGAGTGATATCGGTTCCCCAAGGGTGGAAACGTATTCACCCAAAGAA
CAGAAAGAAATATTTGATGCTGTACATTCACTACAGATTCTTTCAAGGAC
ACCGTCTTCGTCATCTCCATCGCAGTCCGAATCTAAGACCGACAGTGAGA
ATGAGAATTAA

protein sequence of Ggra7733.t1

>Ggra7733.t1 ID=Ggra7733.t1|Name=Ggra7733.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=737bp
MSGIAHLSSAPLSAAPPPSTVQPAPHPPPHPPHPPPRPPPQLHITVPVMP
HPGPLWMDPASAVAVAAPQPIHYFPVAHTAPQLPPKQPTPSQDPPVPRPR
KPYTATKVREMWSASEHQRMLEGLRLFKRDWAKVTEHVGTRSTAQVRSHA
QKYFDKVAREKTDDYVPRARPKRKSATPYPRKVREHPPTSAHMPTATTVH
PNTHTATSIPPAAATHPHPAHPQAYAIPVQQLHPAVAATHAVQPPTTIHP
APMHVQYAAPPSTFVPQLQPSSYVAQQQPQISIQQQPPTPTMFSPYLNIC
PTQSPNLQRSNFDSSVQPSPVSFVSGHAYTAQSPAPQPQHVPVAHSVFNL
FSPLTPGAYASVARSPSMAHAPTSIVPIAQVQQPIAHHSHVHSHPEGPLP
NCAKCNALRRYGGVLQEIVQFGGSQSIPAPQVAHSNQAVRWQPIHQTQQR
SSKLEPDGNTTKLNQATDSTACATVQEQSDSTSGKKSVDDSLPSFKDSRK
TGTMSPIPTKSRAHRSKLSKSKKIIAKRISVDHVNNNVSSGEMSESDNFS
RINPLSTDISKPDRPGDSNLERKKKTKSSLLRSKKRKSCQSGSSGLPGKN
NSDNFQRRSKKIKCVPIAPTPNVANNVAKRPRVESAPKPDQLLAPRISPA
PETNEAYKTAEERDEDKTAMNNGSPAPNSPKLESESDIGSPRVETYSPKE
QKEIFDAVHSLQILSRTPSSSSPSQSESKTDSENEN*

mRNA from alignment at tig00000088_pilon:184876..187086+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7733.t1 ID=Ggra7733.t1|Name=Ggra7733.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2211bp|location=Sequence derived from alignment at tig00000088_pilon:184876..187086+ (Gracilaria gracilis GNS1m male)
ATGTCCGGCATCGCCCACCTCTCCAGCGCGCCACTGTCCGCCGCCCCGCC
ACCTTCTACCGTCCAGCCCGCCCCCCATCCTCCGCCTCACCCCCCTCACC
CACCGCCCCGCCCGCCTCCGCAGCTGCACATCACCGTTCCTGTCATGCCG
CATCCCGGTCCGCTTTGGATGGATccggcgtccgccgtcgccgtcgccgc
cccacagccCATCCACTACTTCCCCGTCGCGCATACGGCGCCGCAACTCC
CCCCGAAACAGCCCACTCCGTCGCAAGATCCGCCCGTGCCGCGCCCGCGC
AAGCCGTACACCGCCACCAAGGTGCGTGAGATGTGGAGCGCCAGTGAGCA
CCAACGTATGTTGGAGGGCCTCCGCCTCTTCAAGCGCGACTGGGCAAAGG
TTACCGAGCATGTTGGTACCCGATCTACCGCACAGGTTCGCTCGCACGCT
CAGAAATACTTTGACAAGGTCGCGCGCGAGAAGACCGATGATTATGTGCC
AAGGGCGCGCCCGAAGAGAAAGTCTGCCACCCCCTATCCGAGAAAAGTTC
GTGAACATCCCCCGACTTCAGCTCACATGCCTACTGCTACCACTGTTCAT
CCCAACACCCATACCGCCACATCCATCCCGCCTGCAGCTGCTACCCATCC
CCATCCAGCCCATCCGCAGGCCTATGCTATTCCAGTTCAACAGCTCCATC
CAGCAGTTGCTGCAACTCATGCCGTTCAACCCCCCACCACCATTCACCCA
GCCCCAATGCACGTGCAATACGCTGCACCACCATCAACCTTTGTGCCTCA
ATTGCAACCCTCATCTTACGTTGCACAACAACAACCGCAGATTTCAATAC
AACAACAACCGCCGACTCCTACTATGTTTTCTCCTTATTTGAACATTTGT
CCCACTCAATCACCAAATCTTCAAAGATCCAACTTCGACTCCTCTGTGCA
ACCGTCCCCCGTGTCGTTTGTTAGCGGGCATGCATATACAGCACAGTCAC
CTGCTCCACAACCACAGCACGTACCCGTTGCCCATTCTGTCTTCAACCTC
TTCTCCCCACTTACACCTGGTGCCTATGCTTCTGTTGCTCGGTCACCCTC
CATGGCTCACGCACCCACTTCCATTGTTCCGATCGCTCAAGTGCAGCAGC
CAATTGCTCACCATTCGCATGTACACTCACATCCAGAGGGTCCGCTTCCT
AACTGTGCAAAATGCAACGCATTGAGACGATATGGTGGGGTCTTACAGGA
GATTGTTCAGTTTGGAGGTTCTCAATCTATACCGGCTCCCCAGGTTGCTC
ATTCCAATCAAGCTGTGCGGTGGCAACCAATTCACCAAACCCAGCAGAGG
AGCTCAAAGTTGGAACCAGATGGTAACACCACCAAACTCAATCAAGCAAC
TGACAGTACTGCATGTGCTACAGTTCAAGAGCAGTCCGATTCGACCTCAG
GCAAGAAGAGTGTTGACGACTCGTTACCATCGTTCAAAGATAGTAGAAAG
ACTGGAACAATGTCGCCCATCCCGACCAAGAGTCGAGCGCATCGTTCCAA
GTTATCCAAATCGAAGAAGATCATCGCGAAGCGTATCTCTGTTGATCACG
TGAATAACAATGTGTCGAGTGGTGAAATGTCTGAATCAGACAACTTTTCC
AGGATTAATCCACTCTCTACGGATATCAGCAAGCCAGATAGGCCAGGTGA
TTCCAATCTTGAGAGAAAGAAGAAGACAAAATCATCTCTGCTCAGGTCAA
AGAAACGGAAGAGCTGCCAGAGTGGATCATCAGGACTCCCTGGAAAGAAC
AATTCAGACAATTTTCAGCGGAGATCGAAGAAGATCAAGTGTGTGCCGAT
TGCCCCCACACCGAATGTCGCAAATAATGTTGCAAAGAGACCACGAGTCG
AATCGGCACCCAAGCCGGATCAATTGTTGGCACCCCGGATTAGTCCCGCT
CCGGAAACAAACGAAGCCTACAAGACAGCAGAAGAACGGGACGAGGACAA
AACAGCAATGAATAATGGATCACCCGCTCCGAATAGTCCCAAACTCGAAT
CCGAGAGTGATATCGGTTCCCCAAGGGTGGAAACGTATTCACCCAAAGAA
CAGAAAGAAATATTTGATGCTGTACATTCACTACAGATTCTTTCAAGGAC
ACCGTCTTCGTCATCTCCATCGCAGTCCGAATCTAAGACCGACAGTGAGA
ATGAGAATTAA

Coding sequence (CDS) from alignment at tig00000088_pilon:184876..187086+

>Ggra7733.t1 ID=Ggra7733.t1|Name=Ggra7733.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2211bp|location=Sequence derived from alignment at tig00000088_pilon:184876..187086+ (Gracilaria gracilis GNS1m male)
ATGTCCGGCATCGCCCACCTCTCCAGCGCGCCACTGTCCGCCGCCCCGCC
ACCTTCTACCGTCCAGCCCGCCCCCCATCCTCCGCCTCACCCCCCTCACC
CACCGCCCCGCCCGCCTCCGCAGCTGCACATCACCGTTCCTGTCATGCCG
CATCCCGGTCCGCTTTGGATGGATccggcgtccgccgtcgccgtcgccgc
cccacagccCATCCACTACTTCCCCGTCGCGCATACGGCGCCGCAACTCC
CCCCGAAACAGCCCACTCCGTCGCAAGATCCGCCCGTGCCGCGCCCGCGC
AAGCCGTACACCGCCACCAAGGTGCGTGAGATGTGGAGCGCCAGTGAGCA
CCAACGTATGTTGGAGGGCCTCCGCCTCTTCAAGCGCGACTGGGCAAAGG
TTACCGAGCATGTTGGTACCCGATCTACCGCACAGGTTCGCTCGCACGCT
CAGAAATACTTTGACAAGGTCGCGCGCGAGAAGACCGATGATTATGTGCC
AAGGGCGCGCCCGAAGAGAAAGTCTGCCACCCCCTATCCGAGAAAAGTTC
GTGAACATCCCCCGACTTCAGCTCACATGCCTACTGCTACCACTGTTCAT
CCCAACACCCATACCGCCACATCCATCCCGCCTGCAGCTGCTACCCATCC
CCATCCAGCCCATCCGCAGGCCTATGCTATTCCAGTTCAACAGCTCCATC
CAGCAGTTGCTGCAACTCATGCCGTTCAACCCCCCACCACCATTCACCCA
GCCCCAATGCACGTGCAATACGCTGCACCACCATCAACCTTTGTGCCTCA
ATTGCAACCCTCATCTTACGTTGCACAACAACAACCGCAGATTTCAATAC
AACAACAACCGCCGACTCCTACTATGTTTTCTCCTTATTTGAACATTTGT
CCCACTCAATCACCAAATCTTCAAAGATCCAACTTCGACTCCTCTGTGCA
ACCGTCCCCCGTGTCGTTTGTTAGCGGGCATGCATATACAGCACAGTCAC
CTGCTCCACAACCACAGCACGTACCCGTTGCCCATTCTGTCTTCAACCTC
TTCTCCCCACTTACACCTGGTGCCTATGCTTCTGTTGCTCGGTCACCCTC
CATGGCTCACGCACCCACTTCCATTGTTCCGATCGCTCAAGTGCAGCAGC
CAATTGCTCACCATTCGCATGTACACTCACATCCAGAGGGTCCGCTTCCT
AACTGTGCAAAATGCAACGCATTGAGACGATATGGTGGGGTCTTACAGGA
GATTGTTCAGTTTGGAGGTTCTCAATCTATACCGGCTCCCCAGGTTGCTC
ATTCCAATCAAGCTGTGCGGTGGCAACCAATTCACCAAACCCAGCAGAGG
AGCTCAAAGTTGGAACCAGATGGTAACACCACCAAACTCAATCAAGCAAC
TGACAGTACTGCATGTGCTACAGTTCAAGAGCAGTCCGATTCGACCTCAG
GCAAGAAGAGTGTTGACGACTCGTTACCATCGTTCAAAGATAGTAGAAAG
ACTGGAACAATGTCGCCCATCCCGACCAAGAGTCGAGCGCATCGTTCCAA
GTTATCCAAATCGAAGAAGATCATCGCGAAGCGTATCTCTGTTGATCACG
TGAATAACAATGTGTCGAGTGGTGAAATGTCTGAATCAGACAACTTTTCC
AGGATTAATCCACTCTCTACGGATATCAGCAAGCCAGATAGGCCAGGTGA
TTCCAATCTTGAGAGAAAGAAGAAGACAAAATCATCTCTGCTCAGGTCAA
AGAAACGGAAGAGCTGCCAGAGTGGATCATCAGGACTCCCTGGAAAGAAC
AATTCAGACAATTTTCAGCGGAGATCGAAGAAGATCAAGTGTGTGCCGAT
TGCCCCCACACCGAATGTCGCAAATAATGTTGCAAAGAGACCACGAGTCG
AATCGGCACCCAAGCCGGATCAATTGTTGGCACCCCGGATTAGTCCCGCT
CCGGAAACAAACGAAGCCTACAAGACAGCAGAAGAACGGGACGAGGACAA
AACAGCAATGAATAATGGATCACCCGCTCCGAATAGTCCCAAACTCGAAT
CCGAGAGTGATATCGGTTCCCCAAGGGTGGAAACGTATTCACCCAAAGAA
CAGAAAGAAATATTTGATGCTGTACATTCACTACAGATTCTTTCAAGGAC
ACCGTCTTCGTCATCTCCATCGCAGTCCGAATCTAAGACCGACAGTGAGA
ATGAGAATTAA