Ggra7730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7730.t1
Unique Name	Ggra7730.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	452

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:172891..174246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	29730.Gorai.005G229600.1
PFAMs	Tubulin,Tubulin_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K07374
KEGG Pathway	ko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Evalue	1.69e-254
EggNOG OGs	COG5023@1\|root,KOG1376@2759\|Eukaryota,37JG4@33090\|Viridiplantae,3GBTX@35493\|Streptophyta
Description	Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
COG category	Z
BRITE	ko00000,ko00001,ko03019,ko03036,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7730	Ggra7730	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 172891..174246 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7730.t1.start1	Ggra7730.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 172891..172893 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7730.t1.CDS1	Ggra7730.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 172891..174246 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7730.t1.exon1	Ggra7730.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 172891..174246 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7730.t1.stop1	Ggra7730.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 174244..174246 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7730.t1	Ggra7730.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 172891..174246 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:172891..174246+
coding sequence from alignment at tig00000088_pilon:172891..174246+

mRNA sequence

>Ggra7730.t1 ID=Ggra7730.t1|Name=Ggra7730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=452bp
MREIISLHIGQAGVQVANSCWELYCMEHGITPDGTISAEKQKKGGNDSFS
TFFSETSGGKHIPRAVFLDLEPTVIDEVRHGEYRRLYHPEQLITGKEDAA
NNYARGHYTTGKEIVDVALDRIRKLADNCSGLQGFLVFSSVGGGTGSGLG
SLLLDRISCDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLATHALLEHLDV
GVVLDNEAIYDICRRSLSIARPTYSNLNRLIAQVVSSLTSSLRFDGALNV
DINEFQTNLVPYPRIHFMLSAYAPIVAKEKAHHEESSVAEITSAVFEPNA
AFAKCDPRSGRYIAVSLNYRGKDIFPRDVNAAVASIKTKRSIQFVEWSPT
GMKIGINSQPPTLVKDDDLAESKRSVCSIANSTAIAEVFARINAKFDLMF
AKRAFVHWFVGEGMEEGEFSEARENLAMLEKDYAEVSNEEEEMDEEGADG
Y*

spliced messenger RNA

>Ggra7730.t1 ID=Ggra7730.t1|Name=Ggra7730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000088_pilon:172891..174246+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGAGATCATTTCTCTTCACATCGGTCAAGCTGGCGTGCAGGTTGC
CAACTCGTGCTGGGAGCTTTATTGCATGGAACATGGTATAACTCCGGACG
GAACTATTTCCGCCGAGAAGCAGAAGAAGGGAGGAAATGACTCCTTCTCC
ACATTCTTCTCTGAAACCTCTGGTGGAAAGCACATTCCACGTGCCGTCTT
CCTTGACCTTGAACCCACCGTCATTGACGAAGTTCGTCATGGTGAATACC
GCAGGCTCTATCATCCGGAGCAGCTCATTACCGGGAAAGAGGATGCAGCG
AACAACTATGCCCGGGGTCATTACACCACCGGAAAGGAGATCGTTGACGT
TGCTCTTGACCGCATCCGCAAGTTAGCTGATAATTGTTCTGGCCTCCAAG
GCTTCCTTGTTTTCTCCTCTGTTGGTGGTGGCACCGGATCTGGTCTTGGA
TCTCTACTCCTCGATCGTATTTCTTGCGACTACGGCAAAAAGTCAAAGCT
CGGATTTACTGTGTATCCCTCTCCACAGGTATCTACCTCGGTTGTTGAGC
CCTACAACTCTGTTCTGGCTACGCATGCTCTTCTTGAGCATCTTGATGTG
GGAGTGGTCCTCGACAATGAGGCTATTTACGACATCTGCCGTCGGTCTTT
GAGCATTGCTCGTCCGACCTATTCCAACCTGAACCGTCTCATTGCCCAGG
TGGTGTCGTCTCTCACTTCCTCTCTTCGTTTCGATGGTGCTCTGAATGTG
GATATCAACGAGTTCCAGACCAACTTGGTGCCGTATCCCCGTATTCACTT
CATGCTTTCAGCCTATGCCCCCATTGTCGCCAAGGAGAAGGCACACCATG
AGGAGTCCAGTGTGGCTGAAATCACATCGGCTGTGTTTGAACCGAACGCG
GCGTTCGCCAAGTGCGATCCGCGCTCTGGGCGCTACATTGCTGTATCGCT
CAACTATCGTGGTAAGGACATTTTCCCGAGAGATGTGAACGCGGCCGTCG
CTTCCATCAAGACAAAACGGTCCATTCAATTCGTGGAGTGGTCGCCCACT
GGTATGAAGATTGGTATCAACTCGCAGCCGCCTACTCTTGTGAAGGACGA
TGATTTGGCTGAATCCAAGAGATCAGTTTGCTCCATTGCCAATTCTACTG
CTATTGCTGAAGTGTTTGCCCGAATCAATGCCAAATTCGATCTCATGTTC
GCCAAGAGAGCCTTCGTGCACTGGTTTGTTGGCGAGGGTATGGAGGAAGG
TGAATTCTCTGAGGCCCGTGAGAATCTTGCCATGTTGGAGAAAGACTACG
CTGAGGTCTCCAATGAGGAAGAGGAAATGGATGAAGAGGGTGCGGACGGG
TACTAG

protein sequence of Ggra7730.t1

>Ggra7730.t1 ID=Ggra7730.t1|Name=Ggra7730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=452bp
MREIISLHIGQAGVQVANSCWELYCMEHGITPDGTISAEKQKKGGNDSFS
TFFSETSGGKHIPRAVFLDLEPTVIDEVRHGEYRRLYHPEQLITGKEDAA
NNYARGHYTTGKEIVDVALDRIRKLADNCSGLQGFLVFSSVGGGTGSGLG
SLLLDRISCDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLATHALLEHLDV
GVVLDNEAIYDICRRSLSIARPTYSNLNRLIAQVVSSLTSSLRFDGALNV
DINEFQTNLVPYPRIHFMLSAYAPIVAKEKAHHEESSVAEITSAVFEPNA
AFAKCDPRSGRYIAVSLNYRGKDIFPRDVNAAVASIKTKRSIQFVEWSPT
GMKIGINSQPPTLVKDDDLAESKRSVCSIANSTAIAEVFARINAKFDLMF
AKRAFVHWFVGEGMEEGEFSEARENLAMLEKDYAEVSNEEEEMDEEGADG
Y*

mRNA from alignment at tig00000088_pilon:172891..174246+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7730.t1 ID=Ggra7730.t1|Name=Ggra7730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00000088_pilon:172891..174246+ (Gracilaria gracilis GNS1m male)
ATGCGTGAGATCATTTCTCTTCACATCGGTCAAGCTGGCGTGCAGGTTGC
CAACTCGTGCTGGGAGCTTTATTGCATGGAACATGGTATAACTCCGGACG
GAACTATTTCCGCCGAGAAGCAGAAGAAGGGAGGAAATGACTCCTTCTCC
ACATTCTTCTCTGAAACCTCTGGTGGAAAGCACATTCCACGTGCCGTCTT
CCTTGACCTTGAACCCACCGTCATTGACGAAGTTCGTCATGGTGAATACC
GCAGGCTCTATCATCCGGAGCAGCTCATTACCGGGAAAGAGGATGCAGCG
AACAACTATGCCCGGGGTCATTACACCACCGGAAAGGAGATCGTTGACGT
TGCTCTTGACCGCATCCGCAAGTTAGCTGATAATTGTTCTGGCCTCCAAG
GCTTCCTTGTTTTCTCCTCTGTTGGTGGTGGCACCGGATCTGGTCTTGGA
TCTCTACTCCTCGATCGTATTTCTTGCGACTACGGCAAAAAGTCAAAGCT
CGGATTTACTGTGTATCCCTCTCCACAGGTATCTACCTCGGTTGTTGAGC
CCTACAACTCTGTTCTGGCTACGCATGCTCTTCTTGAGCATCTTGATGTG
GGAGTGGTCCTCGACAATGAGGCTATTTACGACATCTGCCGTCGGTCTTT
GAGCATTGCTCGTCCGACCTATTCCAACCTGAACCGTCTCATTGCCCAGG
TGGTGTCGTCTCTCACTTCCTCTCTTCGTTTCGATGGTGCTCTGAATGTG
GATATCAACGAGTTCCAGACCAACTTGGTGCCGTATCCCCGTATTCACTT
CATGCTTTCAGCCTATGCCCCCATTGTCGCCAAGGAGAAGGCACACCATG
AGGAGTCCAGTGTGGCTGAAATCACATCGGCTGTGTTTGAACCGAACGCG
GCGTTCGCCAAGTGCGATCCGCGCTCTGGGCGCTACATTGCTGTATCGCT
CAACTATCGTGGTAAGGACATTTTCCCGAGAGATGTGAACGCGGCCGTCG
CTTCCATCAAGACAAAACGGTCCATTCAATTCGTGGAGTGGTCGCCCACT
GGTATGAAGATTGGTATCAACTCGCAGCCGCCTACTCTTGTGAAGGACGA
TGATTTGGCTGAATCCAAGAGATCAGTTTGCTCCATTGCCAATTCTACTG
CTATTGCTGAAGTGTTTGCCCGAATCAATGCCAAATTCGATCTCATGTTC
GCCAAGAGAGCCTTCGTGCACTGGTTTGTTGGCGAGGGTATGGAGGAAGG
TGAATTCTCTGAGGCCCGTGAGAATCTTGCCATGTTGGAGAAAGACTACG
CTGAGGTCTCCAATGAGGAAGAGGAAATGGATGAAGAGGGTGCGGACGGG
TACTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:172891..174246+

>Ggra7730.t1 ID=Ggra7730.t1|Name=Ggra7730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00000088_pilon:172891..174246+ (Gracilaria gracilis GNS1m male)
ATGCGTGAGATCATTTCTCTTCACATCGGTCAAGCTGGCGTGCAGGTTGC
CAACTCGTGCTGGGAGCTTTATTGCATGGAACATGGTATAACTCCGGACG
GAACTATTTCCGCCGAGAAGCAGAAGAAGGGAGGAAATGACTCCTTCTCC
ACATTCTTCTCTGAAACCTCTGGTGGAAAGCACATTCCACGTGCCGTCTT
CCTTGACCTTGAACCCACCGTCATTGACGAAGTTCGTCATGGTGAATACC
GCAGGCTCTATCATCCGGAGCAGCTCATTACCGGGAAAGAGGATGCAGCG
AACAACTATGCCCGGGGTCATTACACCACCGGAAAGGAGATCGTTGACGT
TGCTCTTGACCGCATCCGCAAGTTAGCTGATAATTGTTCTGGCCTCCAAG
GCTTCCTTGTTTTCTCCTCTGTTGGTGGTGGCACCGGATCTGGTCTTGGA
TCTCTACTCCTCGATCGTATTTCTTGCGACTACGGCAAAAAGTCAAAGCT
CGGATTTACTGTGTATCCCTCTCCACAGGTATCTACCTCGGTTGTTGAGC
CCTACAACTCTGTTCTGGCTACGCATGCTCTTCTTGAGCATCTTGATGTG
GGAGTGGTCCTCGACAATGAGGCTATTTACGACATCTGCCGTCGGTCTTT
GAGCATTGCTCGTCCGACCTATTCCAACCTGAACCGTCTCATTGCCCAGG
TGGTGTCGTCTCTCACTTCCTCTCTTCGTTTCGATGGTGCTCTGAATGTG
GATATCAACGAGTTCCAGACCAACTTGGTGCCGTATCCCCGTATTCACTT
CATGCTTTCAGCCTATGCCCCCATTGTCGCCAAGGAGAAGGCACACCATG
AGGAGTCCAGTGTGGCTGAAATCACATCGGCTGTGTTTGAACCGAACGCG
GCGTTCGCCAAGTGCGATCCGCGCTCTGGGCGCTACATTGCTGTATCGCT
CAACTATCGTGGTAAGGACATTTTCCCGAGAGATGTGAACGCGGCCGTCG
CTTCCATCAAGACAAAACGGTCCATTCAATTCGTGGAGTGGTCGCCCACT
GGTATGAAGATTGGTATCAACTCGCAGCCGCCTACTCTTGTGAAGGACGA
TGATTTGGCTGAATCCAAGAGATCAGTTTGCTCCATTGCCAATTCTACTG
CTATTGCTGAAGTGTTTGCCCGAATCAATGCCAAATTCGATCTCATGTTC
GCCAAGAGAGCCTTCGTGCACTGGTTTGTTGGCGAGGGTATGGAGGAAGG
TGAATTCTCTGAGGCCCGTGAGAATCTTGCCATGTTGGAGAAAGACTACG
CTGAGGTCTCCAATGAGGAAGAGGAAATGGATGAAGAGGGTGCGGACGGG
TACTAG