Ggra7729.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7729.t1
Unique Name	Ggra7729.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	439

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:170842..172158 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10160.XP_004623104.1
Preferred name	TRAPPC13
PFAMs	DUF974
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K20310
GOs	GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0017016,GO:0017112,GO:0017137,GO:0019899,GO:0031267,GO:0044424,GO:0044444,GO:0044464,GO:0051020,GO:0065007,GO:0065009,GO:0098772
Evalue	1.27e-32
EggNOG OGs	KOG2625@1\|root,KOG2625@2759\|Eukaryota,38ER9@33154\|Opisthokonta,3BDCT@33208\|Metazoa,3CZGW@33213\|Bilateria,4816C@7711\|Chordata,48Z7F@7742\|Vertebrata,3JD59@40674\|Mammalia,35H5A@314146\|Euarchontoglires,4PYXR@9989\|Rodentia
Description	Protein of unknown function (DUF974)
COG category	S
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7729	Ggra7729	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 170842..172158 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7729.t1.stop1	Ggra7729.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 170842..170844 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7729.t1.CDS1	Ggra7729.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 170842..172158 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7729.t1.exon1	Ggra7729.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 170842..172158 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7729.t1.start1	Ggra7729.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 172156..172158 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7729.t1	Ggra7729.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 170842..172158 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:170842..172158-
coding sequence from alignment at tig00000088_pilon:170842..172158-

mRNA sequence

>Ggra7729.t1 ID=Ggra7729.t1|Name=Ggra7729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MRDASPARAGPHALAFRVMRLTVPLPTRTNALPFTAISTPSDVFENAPKW
EAEGAPCGIGSLTVLPSSFGSIYAYETFRSFVSVFNRSPDTVEAVVVNIM
MQTASQKRIPLYENPKPHVLRSRKTINNVVSITLAELGVHVLVCTASYRD
NGQTRSLRQFFRFNVLPPLEPTVSVAPLYRRLDAVHIASPPITSANFLHY
LVDLRLLNAIPMPLYAVKAVFEPITPYCVRPLKRDNEQRLQTLDYMLKHG
RRAIIGAGDVTTFLFHVYRKLPTLASSSLWDGTDVQVPKYESVPEDSVKQ
MGKITIYWRSAAGENAQMEQAVVLTDVQDKQPDIEVGVCAVPQDIHVHQP
FVVRCAARNNTEVEKRLYLQIRRDLVGDVVPVGVSGVSLGEVSPGRIVRC
SITMIALVRGQHTLSGIRVVDIDSKVSYKAEALSITVL*

spliced messenger RNA

>Ggra7729.t1 ID=Ggra7729.t1|Name=Ggra7729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000088_pilon:170842..172158- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGATGCTTCTCCAGCGAGGGCTGGCCCTCACGCATTAGCCTTTCG
TGTTATGCGTCTCACTGTTCCTTTACCCACTCGAACAAACGCGTTACCTT
TCACAGCCATAAGTACTCCATCAGATGTATTCGAGAATGCGCCCAAGTGG
GAGGCAGAAGGTGCTCCGTGCGGGATCGGATCTCTTACAGTTCTACCATC
TTCCTTTGGCTCTATATATGCGTACGAGACCTTTCGCTCGTTTGTATCCG
TCTTCAATCGCTCCCCAGATACAGTTGAAGCCGTAGTTGTCAACATAATG
ATGCAGACAGCCTCACAGAAACGAATACCTTTATACGAAAATCCGAAGCC
CCATGTCCTCAGATCACGTAAGACCATAAACAATGTGGTGAGTATCACTT
TAGCGGAATTGGGAGTTCATGTTCTGGTCTGCACGGCTTCCTACCGTGAC
AATGGACAAACAAGATCGCTGCGTCAATTCTTTCGTTTCAATGTTCTGCC
CCCTCTGGAACCCACAGTGAGCGTTGCACCGTTGTACCGGCGTCTGGACG
CCGTTCATATCGCTTCGCCGCCAATAACATCTGCCAACTTCCTCCACTAT
CTGGTTGATTTACGACTTCTGAATGCTATCCCAATGCCCCTCTACGCTGT
CAAAGCGGTTTTCGAACCAATAACACCATATTGTGTGCGGCCTTTAAAGA
GAGACAATGAGCAACGCTTGCAAACTCTGGACTACATGCTTAAGCATGGT
CGTCGCGCAATTATTGGAGCTGGTGATGTGACAACATTCTTGTTCCATGT
TTATAGAAAACTTCCTACGCTAGCATCATCAAGTCTCTGGGATGGGACAG
ACGTTCAAGTTCCAAAGTATGAATCCGTCCCAGAAGACTCGGTGAAGCAA
ATGGGGAAGATTACAATATACTGGCGTTCGGCGGCGGGCGAAAACGCACA
AATGGAACAAGCTGTTGTACTCACAGATGTCCAAGACAAGCAACCAGATA
TAGAGGTCGGCGTGTGTGCAGTTCCGCAAGACATTCATGTTCACCAGCCT
TTTGTTGTGAGATGCGCGGCAAGGAACAACACGGAAGTGGAGAAGCGATT
GTATTTGCAGATTCGCCGAGATTTAGTTGGTGATGTCGTTCCTGTGGGCG
TCAGTGGAGTTTCGCTTGGTGAAGTATCCCCCGGCCGAATAGTCAGATGT
AGCATTACCATGATTGCTCTTGTGCGAGGTCAGCACACACTCTCTGGCAT
AAGAGTTGTAGACATTGATTCCAAAGTCAGTTACAAAGCAGAAGCTCTCT
CTATCACAGTCTTGTAA

protein sequence of Ggra7729.t1

>Ggra7729.t1 ID=Ggra7729.t1|Name=Ggra7729.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MRDASPARAGPHALAFRVMRLTVPLPTRTNALPFTAISTPSDVFENAPKW
EAEGAPCGIGSLTVLPSSFGSIYAYETFRSFVSVFNRSPDTVEAVVVNIM
MQTASQKRIPLYENPKPHVLRSRKTINNVVSITLAELGVHVLVCTASYRD
NGQTRSLRQFFRFNVLPPLEPTVSVAPLYRRLDAVHIASPPITSANFLHY
LVDLRLLNAIPMPLYAVKAVFEPITPYCVRPLKRDNEQRLQTLDYMLKHG
RRAIIGAGDVTTFLFHVYRKLPTLASSSLWDGTDVQVPKYESVPEDSVKQ
MGKITIYWRSAAGENAQMEQAVVLTDVQDKQPDIEVGVCAVPQDIHVHQP
FVVRCAARNNTEVEKRLYLQIRRDLVGDVVPVGVSGVSLGEVSPGRIVRC
SITMIALVRGQHTLSGIRVVDIDSKVSYKAEALSITVL*

mRNA from alignment at tig00000088_pilon:170842..172158-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7729.t1 ID=Ggra7729.t1|Name=Ggra7729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000088_pilon:170842..172158- (Gracilaria gracilis GNS1m male)
ATGAGGGATGCTTCTCCAGCGAGGGCTGGCCCTCACGCATTAGCCTTTCG
TGTTATGCGTCTCACTGTTCCTTTACCCACTCGAACAAACGCGTTACCTT
TCACAGCCATAAGTACTCCATCAGATGTATTCGAGAATGCGCCCAAGTGG
GAGGCAGAAGGTGCTCCGTGCGGGATCGGATCTCTTACAGTTCTACCATC
TTCCTTTGGCTCTATATATGCGTACGAGACCTTTCGCTCGTTTGTATCCG
TCTTCAATCGCTCCCCAGATACAGTTGAAGCCGTAGTTGTCAACATAATG
ATGCAGACAGCCTCACAGAAACGAATACCTTTATACGAAAATCCGAAGCC
CCATGTCCTCAGATCACGTAAGACCATAAACAATGTGGTGAGTATCACTT
TAGCGGAATTGGGAGTTCATGTTCTGGTCTGCACGGCTTCCTACCGTGAC
AATGGACAAACAAGATCGCTGCGTCAATTCTTTCGTTTCAATGTTCTGCC
CCCTCTGGAACCCACAGTGAGCGTTGCACCGTTGTACCGGCGTCTGGACG
CCGTTCATATCGCTTCGCCGCCAATAACATCTGCCAACTTCCTCCACTAT
CTGGTTGATTTACGACTTCTGAATGCTATCCCAATGCCCCTCTACGCTGT
CAAAGCGGTTTTCGAACCAATAACACCATATTGTGTGCGGCCTTTAAAGA
GAGACAATGAGCAACGCTTGCAAACTCTGGACTACATGCTTAAGCATGGT
CGTCGCGCAATTATTGGAGCTGGTGATGTGACAACATTCTTGTTCCATGT
TTATAGAAAACTTCCTACGCTAGCATCATCAAGTCTCTGGGATGGGACAG
ACGTTCAAGTTCCAAAGTATGAATCCGTCCCAGAAGACTCGGTGAAGCAA
ATGGGGAAGATTACAATATACTGGCGTTCGGCGGCGGGCGAAAACGCACA
AATGGAACAAGCTGTTGTACTCACAGATGTCCAAGACAAGCAACCAGATA
TAGAGGTCGGCGTGTGTGCAGTTCCGCAAGACATTCATGTTCACCAGCCT
TTTGTTGTGAGATGCGCGGCAAGGAACAACACGGAAGTGGAGAAGCGATT
GTATTTGCAGATTCGCCGAGATTTAGTTGGTGATGTCGTTCCTGTGGGCG
TCAGTGGAGTTTCGCTTGGTGAAGTATCCCCCGGCCGAATAGTCAGATGT
AGCATTACCATGATTGCTCTTGTGCGAGGTCAGCACACACTCTCTGGCAT
AAGAGTTGTAGACATTGATTCCAAAGTCAGTTACAAAGCAGAAGCTCTCT
CTATCACAGTCTTGTAA

Coding sequence (CDS) from alignment at tig00000088_pilon:170842..172158-

>Ggra7729.t1 ID=Ggra7729.t1|Name=Ggra7729.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000088_pilon:170842..172158- (Gracilaria gracilis GNS1m male)
ATGAGGGATGCTTCTCCAGCGAGGGCTGGCCCTCACGCATTAGCCTTTCG
TGTTATGCGTCTCACTGTTCCTTTACCCACTCGAACAAACGCGTTACCTT
TCACAGCCATAAGTACTCCATCAGATGTATTCGAGAATGCGCCCAAGTGG
GAGGCAGAAGGTGCTCCGTGCGGGATCGGATCTCTTACAGTTCTACCATC
TTCCTTTGGCTCTATATATGCGTACGAGACCTTTCGCTCGTTTGTATCCG
TCTTCAATCGCTCCCCAGATACAGTTGAAGCCGTAGTTGTCAACATAATG
ATGCAGACAGCCTCACAGAAACGAATACCTTTATACGAAAATCCGAAGCC
CCATGTCCTCAGATCACGTAAGACCATAAACAATGTGGTGAGTATCACTT
TAGCGGAATTGGGAGTTCATGTTCTGGTCTGCACGGCTTCCTACCGTGAC
AATGGACAAACAAGATCGCTGCGTCAATTCTTTCGTTTCAATGTTCTGCC
CCCTCTGGAACCCACAGTGAGCGTTGCACCGTTGTACCGGCGTCTGGACG
CCGTTCATATCGCTTCGCCGCCAATAACATCTGCCAACTTCCTCCACTAT
CTGGTTGATTTACGACTTCTGAATGCTATCCCAATGCCCCTCTACGCTGT
CAAAGCGGTTTTCGAACCAATAACACCATATTGTGTGCGGCCTTTAAAGA
GAGACAATGAGCAACGCTTGCAAACTCTGGACTACATGCTTAAGCATGGT
CGTCGCGCAATTATTGGAGCTGGTGATGTGACAACATTCTTGTTCCATGT
TTATAGAAAACTTCCTACGCTAGCATCATCAAGTCTCTGGGATGGGACAG
ACGTTCAAGTTCCAAAGTATGAATCCGTCCCAGAAGACTCGGTGAAGCAA
ATGGGGAAGATTACAATATACTGGCGTTCGGCGGCGGGCGAAAACGCACA
AATGGAACAAGCTGTTGTACTCACAGATGTCCAAGACAAGCAACCAGATA
TAGAGGTCGGCGTGTGTGCAGTTCCGCAAGACATTCATGTTCACCAGCCT
TTTGTTGTGAGATGCGCGGCAAGGAACAACACGGAAGTGGAGAAGCGATT
GTATTTGCAGATTCGCCGAGATTTAGTTGGTGATGTCGTTCCTGTGGGCG
TCAGTGGAGTTTCGCTTGGTGAAGTATCCCCCGGCCGAATAGTCAGATGT
AGCATTACCATGATTGCTCTTGTGCGAGGTCAGCACACACTCTCTGGCAT
AAGAGTTGTAGACATTGATTCCAAAGTCAGTTACAAAGCAGAAGCTCTCT
CTATCACAGTCTTGTAA