Ggra7725.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7725.t1
Unique Name	Ggra7725.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	721

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:160018..162180 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0233114
PFAMs	POP1,POPLD
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K01164
KEGG Pathway	ko03008,ko03013,map03008,map03013
Evalue	3.18e-49
EggNOG OGs	KOG3322@1\|root,KOG3322@2759\|Eukaryota,3X8ZE@554915\|Amoebozoa
EC	3.1.26.5
Description	POPLD (NUC188) domain
COG category	A
BRITE	ko00000,ko00001,ko01000,ko03009,ko03016,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7725	Ggra7725	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 160018..162180 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7725.t1.stop1	Ggra7725.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 160018..160020 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7725.t1.CDS1	Ggra7725.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 160018..162180 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7725.t1.exon1	Ggra7725.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 160018..162180 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7725.t1.start1	Ggra7725.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 162178..162180 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7725.t1	Ggra7725.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 160018..162180 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:160018..162180-
coding sequence from alignment at tig00000088_pilon:160018..162180-

mRNA sequence

>Ggra7725.t1 ID=Ggra7725.t1|Name=Ggra7725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=721bp
MQMKSKTPNRRQGDNQAIQRNVQNATLDVVDFAVARALELRALREAASSL
SGTRRVYQQLSWHRRRRTMSHSSRRIPARFRAAHAAQLEKQRPPGTCERL
PGPKGAARCRKYRKKARFLKAIRKLRARNPEWLETHIWHAKRFRMGDVGG
RHVAVSCNDRGYRSAYKAASRACVIHDASYLDIIEISGDLASVKSVLRVV
TGPHSNRVVTNPMVNGCRWATDVVIMDGTKAIGPSDVLWRPSSAVVSDGE
PKGEIIRVWLWVHPTLTDHALKAIQKHTRIGTKVQRIISPPQRFSLYGSR
SGIVLASVLRTTSTPFVHVARARSPNCLPAGCVICGEAEDPRASFPPKTM
GENAKKVALDYDYGVDFQSVDASELWSETKRKLWPERIASGKGKPSQDRI
PFILMQRTMAVAAGYEVLIPAGTGMIFWNSLMYANGARAIGIEEVKRLRV
ENLMEVFPEDYQDGETGYALMREERLKEEGRYNKKPPSKRVNYAMNRITS
PMIPDLDGIAINETKLLGQKRKRIKLDAENETQGLVRIIRNRSLLHQFFG
MHLFQHLIHTNDRRVVSRQVVQHLKSPLDNRNLGIEPIAQHCTHFVRVCI
KPLSRGVPERNGILCEPNAADLGSIHTLGSQFSGDVEKKSDPNRGETRPT
RDVVGYISFGGWRMSCGAPVGIGLMAISALRRLADAEWDKRGKKGVHVLF
RNTRSPQYRAAIVTVLASEC*

spliced messenger RNA

>Ggra7725.t1 ID=Ggra7725.t1|Name=Ggra7725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2163bp|location=Sequence derived from alignment at tig00000088_pilon:160018..162180- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATGAAGTCAAAGACCCCCAACCGCCGACAAGGGGACAACCAAGC
GATACAAAGAAATGTGCAGAACGCAACTTTGGACGTGGTTGACTTCGCTG
TTGCTCGAGCATTGGAGTTACGGGCACTACGGGAGGCGGCTTCCTCGCTG
TCTGGAACTCGGCGCGTTTACCAACAGCTCTCATGGCACAGGAGAAGGAG
AACAATGTCTCACTCGTCACGAAGAATACCAGCACGATTTCGTGCCGCAC
ATGCCGCTCAACTGGAGAAGCAGCGTCCACCTGGTACGTGTGAGCGTCTT
CCAGGTCCAAAAGGTGCTGCAAGATGCCGCAAGTATCGAAAGAAAGCTCG
TTTCTTGAAAGCCATACGCAAACTGCGAGCGAGGAACCCAGAGTGGCTAG
AGACTCATATATGGCATGCGAAACGTTTTCGGATGGGAGACGTCGGTGGA
CGTCATGTGGCAGTGAGCTGCAACGATCGAGGATACCGCTCTGCGTACAA
AGCGGCATCCCGAGCTTGTGTGATTCATGATGCTAGCTACCTGGACATCA
TCGAAATTTCTGGAGACCTGGCCAGTGTCAAGAGTGTTCTGAGAGTGGTT
ACGGGGCCACATAGTAATCGCGTAGTGACGAACCCTATGGTCAATGGATG
TCGTTGGGCTACTGATGTTGTCATCATGGACGGTACGAAGGCAATTGGAC
CATCAGACGTGCTTTGGAGACCATCTTCGGCGGTCGTTTCAGATGGAGAA
CCAAAAGGAGAAATCATTAGAGTCTGGTTGTGGGTTCATCCTACCCTCAC
CGACCATGCTTTGAAAGCAATACAAAAACATACCAGGATTGGCACGAAAG
TGCAAAGGATAATATCTCCGCCTCAGAGATTCTCTCTATACGGTTCTCGT
AGCGGCATAGTACTAGCTTCTGTTTTGCGCACCACTAGCACCCCCTTCGT
ACATGTAGCTCGAGCTCGATCACCAAATTGCTTACCTGCTGGATGTGTTA
TTTGTGGCGAAGCGGAAGATCCCCGTGCTAGCTTCCCTCCAAAAACGATG
GGAGAAAACGCCAAGAAAGTCGCCTTGGACTATGATTACGGGGTTGACTT
TCAGAGTGTTGACGCAAGTGAGCTGTGGAGTGAAACTAAGCGCAAATTGT
GGCCTGAGCGAATAGCCAGCGGAAAAGGAAAACCTTCACAAGATAGAATA
CCATTTATCCTCATGCAGCGAACGATGGCCGTGGCAGCTGGATACGAGGT
CTTAATTCCAGCCGGGACCGGAATGATCTTTTGGAATTCCCTCATGTATG
CGAATGGAGCAAGAGCGATTGGAATTGAAGAAGTGAAGCGTCTTCGCGTG
GAAAACTTGATGGAAGTATTCCCAGAAGACTATCAAGATGGGGAGACTGG
ATATGCCCTGATGCGGGAAGAACGTTTAAAAGAAGAGGGTCGATATAACA
AGAAACCTCCTTCGAAGAGAGTAAATTATGCAATGAACAGAATTACATCG
CCCATGATTCCTGATCTAGATGGTATCGCAATCAACGAAACGAAACTTCT
AGGACAGAAGAGAAAGCGCATCAAGCTGGATGCAGAAAATGAAACCCAAG
GACTCGTGCGTATCATTCGAAACCGCTCGCTGTTACATCAGTTCTTCGGA
ATGCATCTGTTTCAGCACTTGATTCATACTAATGACCGGAGAGTAGTCTC
ACGGCAGGTTGTTCAGCATTTAAAAAGCCCGCTTGATAACCGTAACCTTG
GTATCGAGCCGATTGCGCAGCATTGCACGCATTTCGTTCGCGTTTGTATC
AAGCCGCTCTCGCGTGGTGTTCCGGAAAGAAATGGTATACTTTGCGAGCC
GAACGCTGCAGATCTTGGATCGATTCATACTTTGGGGTCACAATTCTCGG
GAGATGTAGAGAAGAAGTCGGACCCCAATCGTGGTGAGACCAGGCCTACT
CGCGATGTAGTCGGGTACATCAGTTTTGGTGGTTGGAGAATGTCTTGCGG
GGCACCAGTCGGGATTGGATTGATGGCAATCAGTGCGTTAAGAAGATTAG
CGGACGCTGAATGGGATAAGAGAGGAAAGAAAGGGGTTCACGTTTTGTTT
CGAAACACAAGGTCGCCTCAATATCGTGCTGCGATCGTTACCGTGCTGGC
ATCAGAGTGCTAG

protein sequence of Ggra7725.t1

>Ggra7725.t1 ID=Ggra7725.t1|Name=Ggra7725.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=721bp
MQMKSKTPNRRQGDNQAIQRNVQNATLDVVDFAVARALELRALREAASSL
SGTRRVYQQLSWHRRRRTMSHSSRRIPARFRAAHAAQLEKQRPPGTCERL
PGPKGAARCRKYRKKARFLKAIRKLRARNPEWLETHIWHAKRFRMGDVGG
RHVAVSCNDRGYRSAYKAASRACVIHDASYLDIIEISGDLASVKSVLRVV
TGPHSNRVVTNPMVNGCRWATDVVIMDGTKAIGPSDVLWRPSSAVVSDGE
PKGEIIRVWLWVHPTLTDHALKAIQKHTRIGTKVQRIISPPQRFSLYGSR
SGIVLASVLRTTSTPFVHVARARSPNCLPAGCVICGEAEDPRASFPPKTM
GENAKKVALDYDYGVDFQSVDASELWSETKRKLWPERIASGKGKPSQDRI
PFILMQRTMAVAAGYEVLIPAGTGMIFWNSLMYANGARAIGIEEVKRLRV
ENLMEVFPEDYQDGETGYALMREERLKEEGRYNKKPPSKRVNYAMNRITS
PMIPDLDGIAINETKLLGQKRKRIKLDAENETQGLVRIIRNRSLLHQFFG
MHLFQHLIHTNDRRVVSRQVVQHLKSPLDNRNLGIEPIAQHCTHFVRVCI
KPLSRGVPERNGILCEPNAADLGSIHTLGSQFSGDVEKKSDPNRGETRPT
RDVVGYISFGGWRMSCGAPVGIGLMAISALRRLADAEWDKRGKKGVHVLF
RNTRSPQYRAAIVTVLASEC*

mRNA from alignment at tig00000088_pilon:160018..162180-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7725.t1 ID=Ggra7725.t1|Name=Ggra7725.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2163bp|location=Sequence derived from alignment at tig00000088_pilon:160018..162180- (Gracilaria gracilis GNS1m male)
ATGCAAATGAAGTCAAAGACCCCCAACCGCCGACAAGGGGACAACCAAGC
GATACAAAGAAATGTGCAGAACGCAACTTTGGACGTGGTTGACTTCGCTG
TTGCTCGAGCATTGGAGTTACGGGCACTACGGGAGGCGGCTTCCTCGCTG
TCTGGAACTCGGCGCGTTTACCAACAGCTCTCATGGCACAGGAGAAGGAG
AACAATGTCTCACTCGTCACGAAGAATACCAGCACGATTTCGTGCCGCAC
ATGCCGCTCAACTGGAGAAGCAGCGTCCACCTGGTACGTGTGAGCGTCTT
CCAGGTCCAAAAGGTGCTGCAAGATGCCGCAAGTATCGAAAGAAAGCTCG
TTTCTTGAAAGCCATACGCAAACTGCGAGCGAGGAACCCAGAGTGGCTAG
AGACTCATATATGGCATGCGAAACGTTTTCGGATGGGAGACGTCGGTGGA
CGTCATGTGGCAGTGAGCTGCAACGATCGAGGATACCGCTCTGCGTACAA
AGCGGCATCCCGAGCTTGTGTGATTCATGATGCTAGCTACCTGGACATCA
TCGAAATTTCTGGAGACCTGGCCAGTGTCAAGAGTGTTCTGAGAGTGGTT
ACGGGGCCACATAGTAATCGCGTAGTGACGAACCCTATGGTCAATGGATG
TCGTTGGGCTACTGATGTTGTCATCATGGACGGTACGAAGGCAATTGGAC
CATCAGACGTGCTTTGGAGACCATCTTCGGCGGTCGTTTCAGATGGAGAA
CCAAAAGGAGAAATCATTAGAGTCTGGTTGTGGGTTCATCCTACCCTCAC
CGACCATGCTTTGAAAGCAATACAAAAACATACCAGGATTGGCACGAAAG
TGCAAAGGATAATATCTCCGCCTCAGAGATTCTCTCTATACGGTTCTCGT
AGCGGCATAGTACTAGCTTCTGTTTTGCGCACCACTAGCACCCCCTTCGT
ACATGTAGCTCGAGCTCGATCACCAAATTGCTTACCTGCTGGATGTGTTA
TTTGTGGCGAAGCGGAAGATCCCCGTGCTAGCTTCCCTCCAAAAACGATG
GGAGAAAACGCCAAGAAAGTCGCCTTGGACTATGATTACGGGGTTGACTT
TCAGAGTGTTGACGCAAGTGAGCTGTGGAGTGAAACTAAGCGCAAATTGT
GGCCTGAGCGAATAGCCAGCGGAAAAGGAAAACCTTCACAAGATAGAATA
CCATTTATCCTCATGCAGCGAACGATGGCCGTGGCAGCTGGATACGAGGT
CTTAATTCCAGCCGGGACCGGAATGATCTTTTGGAATTCCCTCATGTATG
CGAATGGAGCAAGAGCGATTGGAATTGAAGAAGTGAAGCGTCTTCGCGTG
GAAAACTTGATGGAAGTATTCCCAGAAGACTATCAAGATGGGGAGACTGG
ATATGCCCTGATGCGGGAAGAACGTTTAAAAGAAGAGGGTCGATATAACA
AGAAACCTCCTTCGAAGAGAGTAAATTATGCAATGAACAGAATTACATCG
CCCATGATTCCTGATCTAGATGGTATCGCAATCAACGAAACGAAACTTCT
AGGACAGAAGAGAAAGCGCATCAAGCTGGATGCAGAAAATGAAACCCAAG
GACTCGTGCGTATCATTCGAAACCGCTCGCTGTTACATCAGTTCTTCGGA
ATGCATCTGTTTCAGCACTTGATTCATACTAATGACCGGAGAGTAGTCTC
ACGGCAGGTTGTTCAGCATTTAAAAAGCCCGCTTGATAACCGTAACCTTG
GTATCGAGCCGATTGCGCAGCATTGCACGCATTTCGTTCGCGTTTGTATC
AAGCCGCTCTCGCGTGGTGTTCCGGAAAGAAATGGTATACTTTGCGAGCC
GAACGCTGCAGATCTTGGATCGATTCATACTTTGGGGTCACAATTCTCGG
GAGATGTAGAGAAGAAGTCGGACCCCAATCGTGGTGAGACCAGGCCTACT
CGCGATGTAGTCGGGTACATCAGTTTTGGTGGTTGGAGAATGTCTTGCGG
GGCACCAGTCGGGATTGGATTGATGGCAATCAGTGCGTTAAGAAGATTAG
CGGACGCTGAATGGGATAAGAGAGGAAAGAAAGGGGTTCACGTTTTGTTT
CGAAACACAAGGTCGCCTCAATATCGTGCTGCGATCGTTACCGTGCTGGC
ATCAGAGTGCTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:160018..162180-

>Ggra7725.t1 ID=Ggra7725.t1|Name=Ggra7725.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2163bp|location=Sequence derived from alignment at tig00000088_pilon:160018..162180- (Gracilaria gracilis GNS1m male)
ATGCAAATGAAGTCAAAGACCCCCAACCGCCGACAAGGGGACAACCAAGC
GATACAAAGAAATGTGCAGAACGCAACTTTGGACGTGGTTGACTTCGCTG
TTGCTCGAGCATTGGAGTTACGGGCACTACGGGAGGCGGCTTCCTCGCTG
TCTGGAACTCGGCGCGTTTACCAACAGCTCTCATGGCACAGGAGAAGGAG
AACAATGTCTCACTCGTCACGAAGAATACCAGCACGATTTCGTGCCGCAC
ATGCCGCTCAACTGGAGAAGCAGCGTCCACCTGGTACGTGTGAGCGTCTT
CCAGGTCCAAAAGGTGCTGCAAGATGCCGCAAGTATCGAAAGAAAGCTCG
TTTCTTGAAAGCCATACGCAAACTGCGAGCGAGGAACCCAGAGTGGCTAG
AGACTCATATATGGCATGCGAAACGTTTTCGGATGGGAGACGTCGGTGGA
CGTCATGTGGCAGTGAGCTGCAACGATCGAGGATACCGCTCTGCGTACAA
AGCGGCATCCCGAGCTTGTGTGATTCATGATGCTAGCTACCTGGACATCA
TCGAAATTTCTGGAGACCTGGCCAGTGTCAAGAGTGTTCTGAGAGTGGTT
ACGGGGCCACATAGTAATCGCGTAGTGACGAACCCTATGGTCAATGGATG
TCGTTGGGCTACTGATGTTGTCATCATGGACGGTACGAAGGCAATTGGAC
CATCAGACGTGCTTTGGAGACCATCTTCGGCGGTCGTTTCAGATGGAGAA
CCAAAAGGAGAAATCATTAGAGTCTGGTTGTGGGTTCATCCTACCCTCAC
CGACCATGCTTTGAAAGCAATACAAAAACATACCAGGATTGGCACGAAAG
TGCAAAGGATAATATCTCCGCCTCAGAGATTCTCTCTATACGGTTCTCGT
AGCGGCATAGTACTAGCTTCTGTTTTGCGCACCACTAGCACCCCCTTCGT
ACATGTAGCTCGAGCTCGATCACCAAATTGCTTACCTGCTGGATGTGTTA
TTTGTGGCGAAGCGGAAGATCCCCGTGCTAGCTTCCCTCCAAAAACGATG
GGAGAAAACGCCAAGAAAGTCGCCTTGGACTATGATTACGGGGTTGACTT
TCAGAGTGTTGACGCAAGTGAGCTGTGGAGTGAAACTAAGCGCAAATTGT
GGCCTGAGCGAATAGCCAGCGGAAAAGGAAAACCTTCACAAGATAGAATA
CCATTTATCCTCATGCAGCGAACGATGGCCGTGGCAGCTGGATACGAGGT
CTTAATTCCAGCCGGGACCGGAATGATCTTTTGGAATTCCCTCATGTATG
CGAATGGAGCAAGAGCGATTGGAATTGAAGAAGTGAAGCGTCTTCGCGTG
GAAAACTTGATGGAAGTATTCCCAGAAGACTATCAAGATGGGGAGACTGG
ATATGCCCTGATGCGGGAAGAACGTTTAAAAGAAGAGGGTCGATATAACA
AGAAACCTCCTTCGAAGAGAGTAAATTATGCAATGAACAGAATTACATCG
CCCATGATTCCTGATCTAGATGGTATCGCAATCAACGAAACGAAACTTCT
AGGACAGAAGAGAAAGCGCATCAAGCTGGATGCAGAAAATGAAACCCAAG
GACTCGTGCGTATCATTCGAAACCGCTCGCTGTTACATCAGTTCTTCGGA
ATGCATCTGTTTCAGCACTTGATTCATACTAATGACCGGAGAGTAGTCTC
ACGGCAGGTTGTTCAGCATTTAAAAAGCCCGCTTGATAACCGTAACCTTG
GTATCGAGCCGATTGCGCAGCATTGCACGCATTTCGTTCGCGTTTGTATC
AAGCCGCTCTCGCGTGGTGTTCCGGAAAGAAATGGTATACTTTGCGAGCC
GAACGCTGCAGATCTTGGATCGATTCATACTTTGGGGTCACAATTCTCGG
GAGATGTAGAGAAGAAGTCGGACCCCAATCGTGGTGAGACCAGGCCTACT
CGCGATGTAGTCGGGTACATCAGTTTTGGTGGTTGGAGAATGTCTTGCGG
GGCACCAGTCGGGATTGGATTGATGGCAATCAGTGCGTTAAGAAGATTAG
CGGACGCTGAATGGGATAAGAGAGGAAAGAAAGGGGTTCACGTTTTGTTT
CGAAACACAAGGTCGCCTCAATATCGTGCTGCGATCGTTACCGTGCTGGC
ATCAGAGTGCTAG