Ggra7724.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7724.t1
Unique NameGgra7724.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:157546..158145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7724Ggra7724Gracilaria gracilis GNS1m malegenetig00000088_pilon 157546..158145 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7724.t1.stop1Ggra7724.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 157546..157548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7724.t1.CDS1Ggra7724.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 157546..158145 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7724.t1.exon1Ggra7724.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 157546..158145 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7724.t1.start1Ggra7724.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 158143..158145 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7724.t1Ggra7724.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 157546..158145 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7724.t1 ID=Ggra7724.t1|Name=Ggra7724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MSNEGPSWWRTRTCTGPDLLGDSKTWFVLFEFYQKCSQKYAFLRVSVCDG
ITSQDAFFKHDEIFTRYGYGFSNPYTQRLLQSLRNVVDQIDPGSVIVVME
KGQFATVEVAGENVKPTLRLTMKADLNPGEFVDRVTKYMTYVDALIESVT
DDIASITKQKKELFRAVQKAAKAKREDDGLITQGMRMIMKEKRDYWRKQ*
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spliced messenger RNA

>Ggra7724.t1 ID=Ggra7724.t1|Name=Ggra7724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000088_pilon:157546..158145- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAATGAAGGCCCATCGTGGTGGCGCACAAGAACATGTACTGGACC
AGATCTCCTCGGCGACTCTAAGACATGGTTCGTGCTCTTTGAATTCTATC
AGAAATGTTCTCAAAAGTACGCGTTCTTACGTGTTTCGGTTTGTGATGGG
ATTACATCTCAGGATGCTTTCTTCAAGCACGATGAGATATTTACAAGGTA
CGGCTATGGGTTTTCCAACCCATATACACAACGTCTCTTACAAAGTCTTC
GAAACGTTGTGGATCAGATCGACCCTGGCAGTGTTATTGTTGTGATGGAG
AAGGGGCAATTTGCTACAGTGGAGGTCGCTGGTGAAAACGTGAAGCCAAC
ATTAAGGCTGACGATGAAGGCAGACTTAAACCCTGGTGAATTCGTTGACC
GAGTCACAAAGTATATGACTTATGTAGATGCGTTGATAGAAAGCGTTACC
GACGATATTGCCTCGATTACCAAACAGAAGAAGGAACTCTTCAGGGCTGT
TCAGAAAGCAGCCAAAGCAAAACGAGAGGACGATGGGTTAATAACCCAAG
GCATGCGGATGATAATGAAGGAAAAGAGGGATTACTGGCGAAAACAATGA
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protein sequence of Ggra7724.t1

>Ggra7724.t1 ID=Ggra7724.t1|Name=Ggra7724.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MSNEGPSWWRTRTCTGPDLLGDSKTWFVLFEFYQKCSQKYAFLRVSVCDG
ITSQDAFFKHDEIFTRYGYGFSNPYTQRLLQSLRNVVDQIDPGSVIVVME
KGQFATVEVAGENVKPTLRLTMKADLNPGEFVDRVTKYMTYVDALIESVT
DDIASITKQKKELFRAVQKAAKAKREDDGLITQGMRMIMKEKRDYWRKQ*
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mRNA from alignment at tig00000088_pilon:157546..158145-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7724.t1 ID=Ggra7724.t1|Name=Ggra7724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000088_pilon:157546..158145- (Gracilaria gracilis GNS1m male)
ATGTCGAATGAAGGCCCATCGTGGTGGCGCACAAGAACATGTACTGGACC
AGATCTCCTCGGCGACTCTAAGACATGGTTCGTGCTCTTTGAATTCTATC
AGAAATGTTCTCAAAAGTACGCGTTCTTACGTGTTTCGGTTTGTGATGGG
ATTACATCTCAGGATGCTTTCTTCAAGCACGATGAGATATTTACAAGGTA
CGGCTATGGGTTTTCCAACCCATATACACAACGTCTCTTACAAAGTCTTC
GAAACGTTGTGGATCAGATCGACCCTGGCAGTGTTATTGTTGTGATGGAG
AAGGGGCAATTTGCTACAGTGGAGGTCGCTGGTGAAAACGTGAAGCCAAC
ATTAAGGCTGACGATGAAGGCAGACTTAAACCCTGGTGAATTCGTTGACC
GAGTCACAAAGTATATGACTTATGTAGATGCGTTGATAGAAAGCGTTACC
GACGATATTGCCTCGATTACCAAACAGAAGAAGGAACTCTTCAGGGCTGT
TCAGAAAGCAGCCAAAGCAAAACGAGAGGACGATGGGTTAATAACCCAAG
GCATGCGGATGATAATGAAGGAAAAGAGGGATTACTGGCGAAAACAATGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:157546..158145-

>Ggra7724.t1 ID=Ggra7724.t1|Name=Ggra7724.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000088_pilon:157546..158145- (Gracilaria gracilis GNS1m male)
ATGTCGAATGAAGGCCCATCGTGGTGGCGCACAAGAACATGTACTGGACC
AGATCTCCTCGGCGACTCTAAGACATGGTTCGTGCTCTTTGAATTCTATC
AGAAATGTTCTCAAAAGTACGCGTTCTTACGTGTTTCGGTTTGTGATGGG
ATTACATCTCAGGATGCTTTCTTCAAGCACGATGAGATATTTACAAGGTA
CGGCTATGGGTTTTCCAACCCATATACACAACGTCTCTTACAAAGTCTTC
GAAACGTTGTGGATCAGATCGACCCTGGCAGTGTTATTGTTGTGATGGAG
AAGGGGCAATTTGCTACAGTGGAGGTCGCTGGTGAAAACGTGAAGCCAAC
ATTAAGGCTGACGATGAAGGCAGACTTAAACCCTGGTGAATTCGTTGACC
GAGTCACAAAGTATATGACTTATGTAGATGCGTTGATAGAAAGCGTTACC
GACGATATTGCCTCGATTACCAAACAGAAGAAGGAACTCTTCAGGGCTGT
TCAGAAAGCAGCCAAAGCAAAACGAGAGGACGATGGGTTAATAACCCAAG
GCATGCGGATGATAATGAAGGAAAAGAGGGATTACTGGCGAAAACAATGA
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