Ggra7723.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7723.t1
Unique Name	Ggra7723.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:155268..156800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	306281.AJLK01000124_gene390
PFAMs	CBS,DHH,DHHA1,PolyA_pol,PolyA_pol_RNAbd
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00078
KEGG ko	ko:K00970,ko:K00974
KEGG Reaction	R09382,R09383,R09384,R09386
KEGG Pathway	ko03013,ko03018,map03013,map03018
Evalue	1.86e-94
EggNOG OGs	COG0517@1\|root,COG0617@1\|root,COG0618@1\|root,COG0517@2\|Bacteria,COG0617@2\|Bacteria,COG0618@2\|Bacteria,1FZVS@1117\|Cyanobacteria,1JHWE@1189\|Stigonemataceae
EC	2.7.7.19,2.7.7.72
Description	Poly A polymerase head domain
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03016,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7723	Ggra7723	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 155268..156800 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7723.t1.start1	Ggra7723.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 155268..155270 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7723.t1.CDS1	Ggra7723.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 155268..156800 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7723.t1.exon1	Ggra7723.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 155268..156800 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7723.t1.stop1	Ggra7723.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 156798..156800 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7723.t1	Ggra7723.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 155268..156800 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:155268..156800+
coding sequence from alignment at tig00000088_pilon:155268..156800+

mRNA sequence

>Ggra7723.t1 ID=Ggra7723.t1|Name=Ggra7723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=511bp
MRASATPAHVPLPPPPLPLPTNNHTWSPSSTSALDIILTHATADFDSLGC
AVGLAKLISPSAIVVLPAGVHSAVRRYLSLHKSFFPIVEAKLIDPARIRF
LGVVDTCSKKMLAAAASWLAHADSVLVIDHHATTNSHAITQADVSGDLHI
INQPVGAATTIVVESLMQRKDIQLSTAECTLLALAIHTDTGSLSFESTTP
RDATALAWLLERGACQRSISQFARNYLTTPQQRLLANALDTMTVQFVDGI
RVAHVTLESDDFVNGMAGVAQTALELANIDALILAVVAPSGRSKTDLASK
RSRMKRVSIIARARSGVDGIDFSELFRSHGGGGHPQAAAFTVKVRGGEEV
GELVESLMDGLLAQLPPPIYAQDFMSTDVVSITNDQTMGEAKALLFESGH
TGIAVVKSMQRKELVGVISRQDVALAERRDLLNTPVKGWVARKVIYVGKD
TLLHEIERLLVENNIGRLPVVEDDKVIGIVTRSDVLVQRRLFDREDDSPA
LQSMSQAYFV*

spliced messenger RNA

>Ggra7723.t1 ID=Ggra7723.t1|Name=Ggra7723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000088_pilon:155268..156800+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGCGTCTGCCACCCCGGCGCATGTACCACTCCCGCCACCGCCGCT
CCCGCTCCCTACCAACAATCACACATGGAGCCCTTCGTCTACATCAGCGC
TCGACATCATTCTCACCCACGCAACCGCCGACTTTGACTCGTTAGGCTGT
GCTGTAGGGCTTGCCAAACTCATCTCCCCTTCTGCCATAGTCGTACTACC
TGCAGGTGTTCATTCTGCTGTGCGGCGCTATCTCAGTTTACACAAGTCCT
TCTTTCCCATCGTCGAGGCGAAACTCATCGATCCTGCTCGCATACGTTTC
CTTGGCGTCGTCGATACATGTTCGAAGAAAATGCTTGCTGCGGCAGCTTC
CTGGCTAGCGCATGCAGACTCTGTTCTTGTTATTGATCATCACGCCACGA
CCAATTCACATGCCATAACACAGGCAGATGTTTCGGGCGATTTGCACATC
ATCAACCAACCGGTCGGAGCCGCCACTACAATCGTTGTAGAGAGTTTAAT
GCAACGAAAAGATATACAACTATCTACTGCCGAATGCACCTTACTTGCGC
TTGCAATTCATACTGATACTGGTTCGCTCTCTTTCGAAAGCACCACCCCA
CGTGATGCTACAGCCCTAGCTTGGTTGCTAGAACGTGGTGCTTGCCAAAG
ATCCATTTCACAGTTTGCGCGAAATTATCTCACTACCCCTCAACAGCGAT
TGTTGGCAAACGCTCTAGACACAATGACCGTTCAATTTGTCGACGGTATA
CGCGTCGCACATGTGACGTTGGAATCCGATGATTTTGTCAACGGTATGGC
CGGTGTCGCACAAACAGCACTCGAACTTGCGAACATTGATGCGTTAATAC
TCGCTGTCGTGGCTCCATCTGGTCGCTCAAAGACCGACCTTGCATCGAAA
CGGTCTCGTATGAAGCGCGTCAGTATTATTGCTCGTGCTCGTTCTGGTGT
GGATGGCATTGACTTTAGTGAACTATTTCGGTCGCATGGTGGAGGAGGTC
ATCCGCAAGCTGCTGCGTTTACCGTCAAGGTTCGCGGCGGGGAAGAGGTC
GGAGAACTTGTTGAATCTCTAATGGATGGCTTACTGGCGCAATTACCGCC
TCCAATCTATGCCCAAGATTTCATGTCAACTGATGTTGTGTCGATCACTA
ATGACCAGACGATGGGTGAAGCAAAAGCACTTTTGTTTGAAAGTGGTCAC
ACGGGCATTGCCGTAGTCAAATCCATGCAACGTAAGGAACTCGTTGGTGT
GATTTCGAGACAGGATGTTGCACTGGCAGAGAGAAGGGATTTGCTAAACA
CTCCAGTGAAAGGGTGGGTCGCACGAAAAGTTATCTATGTGGGCAAAGAT
ACTCTACTACACGAGATTGAGCGATTGTTGGTGGAAAACAATATCGGTAG
GCTTCCAGTAGTTGAAGATGACAAGGTTATTGGTATTGTCACAAGGAGTG
ATGTACTCGTTCAGCGAAGGTTATTCGATCGCGAGGACGATTCGCCCGCC
TTGCAAAGCATGTCGCAAGCGTACTTCGTGTAA

protein sequence of Ggra7723.t1

>Ggra7723.t1 ID=Ggra7723.t1|Name=Ggra7723.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=511bp
MRASATPAHVPLPPPPLPLPTNNHTWSPSSTSALDIILTHATADFDSLGC
AVGLAKLISPSAIVVLPAGVHSAVRRYLSLHKSFFPIVEAKLIDPARIRF
LGVVDTCSKKMLAAAASWLAHADSVLVIDHHATTNSHAITQADVSGDLHI
INQPVGAATTIVVESLMQRKDIQLSTAECTLLALAIHTDTGSLSFESTTP
RDATALAWLLERGACQRSISQFARNYLTTPQQRLLANALDTMTVQFVDGI
RVAHVTLESDDFVNGMAGVAQTALELANIDALILAVVAPSGRSKTDLASK
RSRMKRVSIIARARSGVDGIDFSELFRSHGGGGHPQAAAFTVKVRGGEEV
GELVESLMDGLLAQLPPPIYAQDFMSTDVVSITNDQTMGEAKALLFESGH
TGIAVVKSMQRKELVGVISRQDVALAERRDLLNTPVKGWVARKVIYVGKD
TLLHEIERLLVENNIGRLPVVEDDKVIGIVTRSDVLVQRRLFDREDDSPA
LQSMSQAYFV*

mRNA from alignment at tig00000088_pilon:155268..156800+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7723.t1 ID=Ggra7723.t1|Name=Ggra7723.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000088_pilon:155268..156800+ (Gracilaria gracilis GNS1m male)
ATGAGAGCGTCTGCCACCCCGGCGCATGTACCACTCCCGCCACCGCCGCT
CCCGCTCCCTACCAACAATCACACATGGAGCCCTTCGTCTACATCAGCGC
TCGACATCATTCTCACCCACGCAACCGCCGACTTTGACTCGTTAGGCTGT
GCTGTAGGGCTTGCCAAACTCATCTCCCCTTCTGCCATAGTCGTACTACC
TGCAGGTGTTCATTCTGCTGTGCGGCGCTATCTCAGTTTACACAAGTCCT
TCTTTCCCATCGTCGAGGCGAAACTCATCGATCCTGCTCGCATACGTTTC
CTTGGCGTCGTCGATACATGTTCGAAGAAAATGCTTGCTGCGGCAGCTTC
CTGGCTAGCGCATGCAGACTCTGTTCTTGTTATTGATCATCACGCCACGA
CCAATTCACATGCCATAACACAGGCAGATGTTTCGGGCGATTTGCACATC
ATCAACCAACCGGTCGGAGCCGCCACTACAATCGTTGTAGAGAGTTTAAT
GCAACGAAAAGATATACAACTATCTACTGCCGAATGCACCTTACTTGCGC
TTGCAATTCATACTGATACTGGTTCGCTCTCTTTCGAAAGCACCACCCCA
CGTGATGCTACAGCCCTAGCTTGGTTGCTAGAACGTGGTGCTTGCCAAAG
ATCCATTTCACAGTTTGCGCGAAATTATCTCACTACCCCTCAACAGCGAT
TGTTGGCAAACGCTCTAGACACAATGACCGTTCAATTTGTCGACGGTATA
CGCGTCGCACATGTGACGTTGGAATCCGATGATTTTGTCAACGGTATGGC
CGGTGTCGCACAAACAGCACTCGAACTTGCGAACATTGATGCGTTAATAC
TCGCTGTCGTGGCTCCATCTGGTCGCTCAAAGACCGACCTTGCATCGAAA
CGGTCTCGTATGAAGCGCGTCAGTATTATTGCTCGTGCTCGTTCTGGTGT
GGATGGCATTGACTTTAGTGAACTATTTCGGTCGCATGGTGGAGGAGGTC
ATCCGCAAGCTGCTGCGTTTACCGTCAAGGTTCGCGGCGGGGAAGAGGTC
GGAGAACTTGTTGAATCTCTAATGGATGGCTTACTGGCGCAATTACCGCC
TCCAATCTATGCCCAAGATTTCATGTCAACTGATGTTGTGTCGATCACTA
ATGACCAGACGATGGGTGAAGCAAAAGCACTTTTGTTTGAAAGTGGTCAC
ACGGGCATTGCCGTAGTCAAATCCATGCAACGTAAGGAACTCGTTGGTGT
GATTTCGAGACAGGATGTTGCACTGGCAGAGAGAAGGGATTTGCTAAACA
CTCCAGTGAAAGGGTGGGTCGCACGAAAAGTTATCTATGTGGGCAAAGAT
ACTCTACTACACGAGATTGAGCGATTGTTGGTGGAAAACAATATCGGTAG
GCTTCCAGTAGTTGAAGATGACAAGGTTATTGGTATTGTCACAAGGAGTG
ATGTACTCGTTCAGCGAAGGTTATTCGATCGCGAGGACGATTCGCCCGCC
TTGCAAAGCATGTCGCAAGCGTACTTCGTGTAA

Coding sequence (CDS) from alignment at tig00000088_pilon:155268..156800+

>Ggra7723.t1 ID=Ggra7723.t1|Name=Ggra7723.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000088_pilon:155268..156800+ (Gracilaria gracilis GNS1m male)
ATGAGAGCGTCTGCCACCCCGGCGCATGTACCACTCCCGCCACCGCCGCT
CCCGCTCCCTACCAACAATCACACATGGAGCCCTTCGTCTACATCAGCGC
TCGACATCATTCTCACCCACGCAACCGCCGACTTTGACTCGTTAGGCTGT
GCTGTAGGGCTTGCCAAACTCATCTCCCCTTCTGCCATAGTCGTACTACC
TGCAGGTGTTCATTCTGCTGTGCGGCGCTATCTCAGTTTACACAAGTCCT
TCTTTCCCATCGTCGAGGCGAAACTCATCGATCCTGCTCGCATACGTTTC
CTTGGCGTCGTCGATACATGTTCGAAGAAAATGCTTGCTGCGGCAGCTTC
CTGGCTAGCGCATGCAGACTCTGTTCTTGTTATTGATCATCACGCCACGA
CCAATTCACATGCCATAACACAGGCAGATGTTTCGGGCGATTTGCACATC
ATCAACCAACCGGTCGGAGCCGCCACTACAATCGTTGTAGAGAGTTTAAT
GCAACGAAAAGATATACAACTATCTACTGCCGAATGCACCTTACTTGCGC
TTGCAATTCATACTGATACTGGTTCGCTCTCTTTCGAAAGCACCACCCCA
CGTGATGCTACAGCCCTAGCTTGGTTGCTAGAACGTGGTGCTTGCCAAAG
ATCCATTTCACAGTTTGCGCGAAATTATCTCACTACCCCTCAACAGCGAT
TGTTGGCAAACGCTCTAGACACAATGACCGTTCAATTTGTCGACGGTATA
CGCGTCGCACATGTGACGTTGGAATCCGATGATTTTGTCAACGGTATGGC
CGGTGTCGCACAAACAGCACTCGAACTTGCGAACATTGATGCGTTAATAC
TCGCTGTCGTGGCTCCATCTGGTCGCTCAAAGACCGACCTTGCATCGAAA
CGGTCTCGTATGAAGCGCGTCAGTATTATTGCTCGTGCTCGTTCTGGTGT
GGATGGCATTGACTTTAGTGAACTATTTCGGTCGCATGGTGGAGGAGGTC
ATCCGCAAGCTGCTGCGTTTACCGTCAAGGTTCGCGGCGGGGAAGAGGTC
GGAGAACTTGTTGAATCTCTAATGGATGGCTTACTGGCGCAATTACCGCC
TCCAATCTATGCCCAAGATTTCATGTCAACTGATGTTGTGTCGATCACTA
ATGACCAGACGATGGGTGAAGCAAAAGCACTTTTGTTTGAAAGTGGTCAC
ACGGGCATTGCCGTAGTCAAATCCATGCAACGTAAGGAACTCGTTGGTGT
GATTTCGAGACAGGATGTTGCACTGGCAGAGAGAAGGGATTTGCTAAACA
CTCCAGTGAAAGGGTGGGTCGCACGAAAAGTTATCTATGTGGGCAAAGAT
ACTCTACTACACGAGATTGAGCGATTGTTGGTGGAAAACAATATCGGTAG
GCTTCCAGTAGTTGAAGATGACAAGGTTATTGGTATTGTCACAAGGAGTG
ATGTACTCGTTCAGCGAAGGTTATTCGATCGCGAGGACGATTCGCCCGCC
TTGCAAAGCATGTCGCAAGCGTACTTCGTGTAA