Ggra7718.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7718.t1
Unique NameGgra7718.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:146916..147965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704304.1
PFAMsTim44
Max annot lvl2759|Eukaryota
KEGG koko:K17804
KEGG TC3.A.8.1
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009987,GO:0015031,GO:0015399,GO:0015405,GO:0015440,GO:0015450,GO:0015462,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019866,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033036,GO:0033220,GO:0033365,GO:0034613,GO:0042623,GO:0042626,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051087,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:1904680,GO:1990542
Evalue6.38e-75
EggNOG OGsKOG2580@1|root,KOG2580@2759|Eukaryota
Descriptionprotein import into mitochondrial matrix
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7718Ggra7718Gracilaria gracilis GNS1m malegenetig00000088_pilon 146916..147965 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7718.t1.start1Ggra7718.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 146916..146918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7718.t1.CDS1Ggra7718.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 146916..147965 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7718.t1.exon1Ggra7718.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 146916..147965 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7718.t1.stop1Ggra7718.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 147963..147965 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7718.t1Ggra7718.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 146916..147965 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7718.t1 ID=Ggra7718.t1|Name=Ggra7718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MQLSVRLQATLSQKSEDPTFEEKRDSSSSNFTGDAEHSDGSSKPSKNSVE
KPGAIGGFMRGLIGGQSVAVEDAFIAEAKKQGVKIPPPPPQRRVDLVPIK
RKKRREEAEEDETIRDRIFGRFAGSAFMRGAFEAKERIQERIDESDNPLI
NMFRNIYDRFFAENEMAMVVREIRDEDPLFRISEFLQQVETHFVPNILGA
YLQGDRDSLRDNCTDEAFEMLNASIRERDAEGILMDTNILDVSDVELTAG
KLLEDSPVLIVTFNTQQINCLRDRAGNVVEGQEDDIRAVYYAWAFVKEAE
YEDFAPMGGGIGADEKESKDPDDEAKNEKEDERPWKLKEMVIRGAHSTI*
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spliced messenger RNA

>Ggra7718.t1 ID=Ggra7718.t1|Name=Ggra7718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000088_pilon:146916..147965+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTATCAGTACGCTTACAAGCAACACTCAGCCAAAAATCAGAAGA
TCCTACTTTCGAAGAGAAAAGAGATTCGTCGTCATCTAACTTCACTGGGG
ACGCTGAGCATAGCGATGGGTCTAGCAAACCCTCTAAAAACTCAGTGGAA
AAGCCGGGAGCTATCGGTGGTTTTATGCGAGGTCTGATCGGTGGCCAGTC
TGTAGCTGTTGAAGATGCATTCATTGCTGAAGCGAAGAAACAAGGAGTGA
AGATTCCTCCGCCTCCTCCTCAGCGTCGAGTCGATCTGGTTCCGATAAAG
CGAAAGAAAAGAAGGGAGGAAGCCGAAGAGGATGAAACAATACGAGACCG
GATTTTCGGGCGATTTGCAGGCTCCGCGTTTATGAGAGGTGCATTTGAGG
CCAAGGAGCGCATTCAGGAACGTATTGATGAAAGCGATAATCCATTGATT
AATATGTTCAGAAATATCTACGATCGCTTCTTCGCCGAGAATGAAATGGC
CATGGTGGTTAGGGAAATCCGAGATGAGGACCCACTGTTCAGAATTTCAG
AGTTCTTGCAACAAGTTGAGACGCACTTTGTACCGAACATTTTGGGGGCT
TATCTTCAGGGTGATCGAGATTCGTTGCGAGATAATTGTACGGACGAAGC
TTTTGAAATGCTCAATGCATCTATTCGCGAGAGAGATGCAGAGGGTATTC
TCATGGATACGAACATATTGGACGTAAGTGATGTAGAGCTCACAGCTGGC
AAATTGCTGGAGGATTCTCCAGTTTTGATTGTTACTTTCAACACTCAACA
GATTAACTGTCTTCGTGATAGGGCAGGAAACGTGGTTGAAGGACAGGAAG
ACGATATTCGCGCGGTGTATTACGCTTGGGCCTTTGTCAAGGAAGCCGAG
TACGAAGACTTCGCTCCTATGGGCGGCGGTATCGGTGCAGATGAGAAAGA
AAGTAAAGATCCTGACGACGAAGCAAAAAATGAGAAAGAAGACGAACGCC
CGTGGAAACTAAAAGAGATGGTAATCCGCGGTGCCCACAGCACAATTTAA
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protein sequence of Ggra7718.t1

>Ggra7718.t1 ID=Ggra7718.t1|Name=Ggra7718.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MQLSVRLQATLSQKSEDPTFEEKRDSSSSNFTGDAEHSDGSSKPSKNSVE
KPGAIGGFMRGLIGGQSVAVEDAFIAEAKKQGVKIPPPPPQRRVDLVPIK
RKKRREEAEEDETIRDRIFGRFAGSAFMRGAFEAKERIQERIDESDNPLI
NMFRNIYDRFFAENEMAMVVREIRDEDPLFRISEFLQQVETHFVPNILGA
YLQGDRDSLRDNCTDEAFEMLNASIRERDAEGILMDTNILDVSDVELTAG
KLLEDSPVLIVTFNTQQINCLRDRAGNVVEGQEDDIRAVYYAWAFVKEAE
YEDFAPMGGGIGADEKESKDPDDEAKNEKEDERPWKLKEMVIRGAHSTI*
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mRNA from alignment at tig00000088_pilon:146916..147965+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7718.t1 ID=Ggra7718.t1|Name=Ggra7718.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000088_pilon:146916..147965+ (Gracilaria gracilis GNS1m male)
ATGCAGCTATCAGTACGCTTACAAGCAACACTCAGCCAAAAATCAGAAGA
TCCTACTTTCGAAGAGAAAAGAGATTCGTCGTCATCTAACTTCACTGGGG
ACGCTGAGCATAGCGATGGGTCTAGCAAACCCTCTAAAAACTCAGTGGAA
AAGCCGGGAGCTATCGGTGGTTTTATGCGAGGTCTGATCGGTGGCCAGTC
TGTAGCTGTTGAAGATGCATTCATTGCTGAAGCGAAGAAACAAGGAGTGA
AGATTCCTCCGCCTCCTCCTCAGCGTCGAGTCGATCTGGTTCCGATAAAG
CGAAAGAAAAGAAGGGAGGAAGCCGAAGAGGATGAAACAATACGAGACCG
GATTTTCGGGCGATTTGCAGGCTCCGCGTTTATGAGAGGTGCATTTGAGG
CCAAGGAGCGCATTCAGGAACGTATTGATGAAAGCGATAATCCATTGATT
AATATGTTCAGAAATATCTACGATCGCTTCTTCGCCGAGAATGAAATGGC
CATGGTGGTTAGGGAAATCCGAGATGAGGACCCACTGTTCAGAATTTCAG
AGTTCTTGCAACAAGTTGAGACGCACTTTGTACCGAACATTTTGGGGGCT
TATCTTCAGGGTGATCGAGATTCGTTGCGAGATAATTGTACGGACGAAGC
TTTTGAAATGCTCAATGCATCTATTCGCGAGAGAGATGCAGAGGGTATTC
TCATGGATACGAACATATTGGACGTAAGTGATGTAGAGCTCACAGCTGGC
AAATTGCTGGAGGATTCTCCAGTTTTGATTGTTACTTTCAACACTCAACA
GATTAACTGTCTTCGTGATAGGGCAGGAAACGTGGTTGAAGGACAGGAAG
ACGATATTCGCGCGGTGTATTACGCTTGGGCCTTTGTCAAGGAAGCCGAG
TACGAAGACTTCGCTCCTATGGGCGGCGGTATCGGTGCAGATGAGAAAGA
AAGTAAAGATCCTGACGACGAAGCAAAAAATGAGAAAGAAGACGAACGCC
CGTGGAAACTAAAAGAGATGGTAATCCGCGGTGCCCACAGCACAATTTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:146916..147965+

>Ggra7718.t1 ID=Ggra7718.t1|Name=Ggra7718.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000088_pilon:146916..147965+ (Gracilaria gracilis GNS1m male)
ATGCAGCTATCAGTACGCTTACAAGCAACACTCAGCCAAAAATCAGAAGA
TCCTACTTTCGAAGAGAAAAGAGATTCGTCGTCATCTAACTTCACTGGGG
ACGCTGAGCATAGCGATGGGTCTAGCAAACCCTCTAAAAACTCAGTGGAA
AAGCCGGGAGCTATCGGTGGTTTTATGCGAGGTCTGATCGGTGGCCAGTC
TGTAGCTGTTGAAGATGCATTCATTGCTGAAGCGAAGAAACAAGGAGTGA
AGATTCCTCCGCCTCCTCCTCAGCGTCGAGTCGATCTGGTTCCGATAAAG
CGAAAGAAAAGAAGGGAGGAAGCCGAAGAGGATGAAACAATACGAGACCG
GATTTTCGGGCGATTTGCAGGCTCCGCGTTTATGAGAGGTGCATTTGAGG
CCAAGGAGCGCATTCAGGAACGTATTGATGAAAGCGATAATCCATTGATT
AATATGTTCAGAAATATCTACGATCGCTTCTTCGCCGAGAATGAAATGGC
CATGGTGGTTAGGGAAATCCGAGATGAGGACCCACTGTTCAGAATTTCAG
AGTTCTTGCAACAAGTTGAGACGCACTTTGTACCGAACATTTTGGGGGCT
TATCTTCAGGGTGATCGAGATTCGTTGCGAGATAATTGTACGGACGAAGC
TTTTGAAATGCTCAATGCATCTATTCGCGAGAGAGATGCAGAGGGTATTC
TCATGGATACGAACATATTGGACGTAAGTGATGTAGAGCTCACAGCTGGC
AAATTGCTGGAGGATTCTCCAGTTTTGATTGTTACTTTCAACACTCAACA
GATTAACTGTCTTCGTGATAGGGCAGGAAACGTGGTTGAAGGACAGGAAG
ACGATATTCGCGCGGTGTATTACGCTTGGGCCTTTGTCAAGGAAGCCGAG
TACGAAGACTTCGCTCCTATGGGCGGCGGTATCGGTGCAGATGAGAAAGA
AAGTAAAGATCCTGACGACGAAGCAAAAAATGAGAAAGAAGACGAACGCC
CGTGGAAACTAAAAGAGATGGTAATCCGCGGTGCCCACAGCACAATTTAA
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