Ggra7709.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7709.t1
Unique NameGgra7709.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length408
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:115548..116771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707861.1
PFAMsBCDHK_Adom3,HATPase_c
Max annot lvl2759|Eukaryota
KEGG koko:K00898
Evalue2.05e-139
EggNOG OGsCOG0642@1|root,KOG0787@2759|Eukaryota
EC2.7.11.2
Descriptionpyruvate dehydrogenase (acetyl-transferring) kinase activity
COG categoryT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7709Ggra7709Gracilaria gracilis GNS1m malegenetig00000088_pilon 115548..116771 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7709.t1.stop1Ggra7709.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 115548..115550 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7709.t1.CDS1Ggra7709.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 115548..116771 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7709.t1.exon1Ggra7709.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 115548..116771 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7709.t1.start1Ggra7709.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 116769..116771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7709.t1Ggra7709.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 115548..116771 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7709.t1 ID=Ggra7709.t1|Name=Ggra7709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=408bp
MSAPAVSAVSSVASNATAVAAAAATAVARSAPAVRQLLRPSLRQSPKALR
REIARAASHRGTPLTVRELYAFGQRALSATNATRLHSAQWLHAELPVRLA
HRVLELDELPYGLARMPSVKQVKHMYENSFCDIVESGLPKTYGEEQQFSD
MLYNIRNRHDDVVRLIAKGVIELKEHCGRGTSDLEIRSFLDRFYMSRIGI
RVLMSHHLALGDQSPGMAGVINRFCKPSHLIEQAVVATRSLAYQHYGEAP
DVQIRGNTQLQFPYIDSHLYLCLFELLKNSLRATVETHRDADVLPPVRCI
IADGVEDVTIKISDEGGGFRRSEMKGVWTYLFTTAKLPPKQLLEMEDRCD
RTNRPDPIAGFGYGLPLSRLYARYWGGELALASMEGYGTDAYLHLSKLGD
KKECLTA*
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spliced messenger RNA

>Ggra7709.t1 ID=Ggra7709.t1|Name=Ggra7709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000088_pilon:115548..116771- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCCCCGCTGTGAGTGCTGTTTCTAGCGTTGCGTCCAATGCCAC
CGCCGTCGCCGCCGCCGCCGCCACCGCTGTGGCGCGCTCGGCGCCGGCCG
TGCGCCAGCTTTTGAGGCCTTCTTTACGCCAATCTCCCAAGGCGCTGCGG
CGTGAAATTGCGCGCGCTGCTTCCCACAGAGGTACTCCGCTTACCGTGCG
CGAGTTGTATGCGTTTGGACAGCGTGCCTTGTCCGCTACCAATGCCACCC
GACTGCATTCTGCCCAGTGGCTGCACGCCGAGCTGCCCGTCCGACTCGCC
CATCGCGTCCTGGAACTGGATGAACTGCCGTACGGACTGGCTCGCATGCC
CTCGGTCAAGCAGGTCAAGCACATGTATGAGAACTCTTTTTGTGACATTG
TCGAGTCGGGCTTACCGAAGACCTACGGAGAGGAGCAACAGTTCTCGGAT
ATGCTGTACAATATCCGCAACCGTCACGATGATGTTGTTCGACTCATTGC
AAAAGGCGTCATTGAGCTCAAGGAACACTGCGGCCGCGGCACTTCGGACC
TTGAGATTCGCTCCTTCCTCGACCGTTTCTACATGTCTAGGATTGGCATT
CGCGTCTTGATGAGCCATCATCTCGCCCTTGGAGATCAGTCACCGGGCAT
GGCCGGTGTTATCAATCGCTTTTGTAAACCTTCCCATCTCATTGAGCAGG
CCGTCGTCGCCACAAGATCGCTCGCCTACCAGCATTACGGCGAAGCTCCG
GACGTTCAAATCAGGGGAAACACTCAGTTGCAGTTTCCGTACATTGATTC
GCACCTCTACCTCTGTTTGTTTGAATTGCTAAAGAACAGTTTGAGGGCAA
CCGTTGAAACTCATCGAGATGCCGATGTATTACCACCTGTCAGATGTATC
ATAGCCGATGGTGTGGAAGACGTTACCATAAAGATAAGTGACGAGGGTGG
AGGTTTCCGTCGCTCGGAAATGAAGGGAGTTTGGACTTATCTGTTCACTA
CTGCTAAACTACCACCCAAGCAACTTTTGGAAATGGAAGACCGATGCGAT
AGGACCAATCGACCCGACCCGATTGCCGGCTTTGGCTATGGTTTGCCACT
CAGTAGACTATACGCAAGGTACTGGGGTGGTGAACTTGCCCTGGCAAGCA
TGGAAGGTTATGGCACTGACGCTTATCTTCATCTGTCCAAACTGGGTGAC
AAGAAGGAATGTCTCACCGCTTAA
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protein sequence of Ggra7709.t1

>Ggra7709.t1 ID=Ggra7709.t1|Name=Ggra7709.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=408bp
MSAPAVSAVSSVASNATAVAAAAATAVARSAPAVRQLLRPSLRQSPKALR
REIARAASHRGTPLTVRELYAFGQRALSATNATRLHSAQWLHAELPVRLA
HRVLELDELPYGLARMPSVKQVKHMYENSFCDIVESGLPKTYGEEQQFSD
MLYNIRNRHDDVVRLIAKGVIELKEHCGRGTSDLEIRSFLDRFYMSRIGI
RVLMSHHLALGDQSPGMAGVINRFCKPSHLIEQAVVATRSLAYQHYGEAP
DVQIRGNTQLQFPYIDSHLYLCLFELLKNSLRATVETHRDADVLPPVRCI
IADGVEDVTIKISDEGGGFRRSEMKGVWTYLFTTAKLPPKQLLEMEDRCD
RTNRPDPIAGFGYGLPLSRLYARYWGGELALASMEGYGTDAYLHLSKLGD
KKECLTA*
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mRNA from alignment at tig00000088_pilon:115548..116771-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7709.t1 ID=Ggra7709.t1|Name=Ggra7709.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1224bp|location=Sequence derived from alignment at tig00000088_pilon:115548..116771- (Gracilaria gracilis GNS1m male)
ATGTCTGCCCCCGCTGTGAGTGCTGTTTCTAGCGTTGCGTCCAATGCCAC
CGCCGTCGCCGCCGCCGCCGCCACCGCTGTGGCGCGCTCGGCGCCGGCCG
TGCGCCAGCTTTTGAGGCCTTCTTTACGCCAATCTCCCAAGGCGCTGCGG
CGTGAAATTGCGCGCGCTGCTTCCCACAGAGGTACTCCGCTTACCGTGCG
CGAGTTGTATGCGTTTGGACAGCGTGCCTTGTCCGCTACCAATGCCACCC
GACTGCATTCTGCCCAGTGGCTGCACGCCGAGCTGCCCGTCCGACTCGCC
CATCGCGTCCTGGAACTGGATGAACTGCCGTACGGACTGGCTCGCATGCC
CTCGGTCAAGCAGGTCAAGCACATGTATGAGAACTCTTTTTGTGACATTG
TCGAGTCGGGCTTACCGAAGACCTACGGAGAGGAGCAACAGTTCTCGGAT
ATGCTGTACAATATCCGCAACCGTCACGATGATGTTGTTCGACTCATTGC
AAAAGGCGTCATTGAGCTCAAGGAACACTGCGGCCGCGGCACTTCGGACC
TTGAGATTCGCTCCTTCCTCGACCGTTTCTACATGTCTAGGATTGGCATT
CGCGTCTTGATGAGCCATCATCTCGCCCTTGGAGATCAGTCACCGGGCAT
GGCCGGTGTTATCAATCGCTTTTGTAAACCTTCCCATCTCATTGAGCAGG
CCGTCGTCGCCACAAGATCGCTCGCCTACCAGCATTACGGCGAAGCTCCG
GACGTTCAAATCAGGGGAAACACTCAGTTGCAGTTTCCGTACATTGATTC
GCACCTCTACCTCTGTTTGTTTGAATTGCTAAAGAACAGTTTGAGGGCAA
CCGTTGAAACTCATCGAGATGCCGATGTATTACCACCTGTCAGATGTATC
ATAGCCGATGGTGTGGAAGACGTTACCATAAAGATAAGTGACGAGGGTGG
AGGTTTCCGTCGCTCGGAAATGAAGGGAGTTTGGACTTATCTGTTCACTA
CTGCTAAACTACCACCCAAGCAACTTTTGGAAATGGAAGACCGATGCGAT
AGGACCAATCGACCCGACCCGATTGCCGGCTTTGGCTATGGTTTGCCACT
CAGTAGACTATACGCAAGGTACTGGGGTGGTGAACTTGCCCTGGCAAGCA
TGGAAGGTTATGGCACTGACGCTTATCTTCATCTGTCCAAACTGGGTGAC
AAGAAGGAATGTCTCACCGCTTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:115548..116771-

>Ggra7709.t1 ID=Ggra7709.t1|Name=Ggra7709.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1224bp|location=Sequence derived from alignment at tig00000088_pilon:115548..116771- (Gracilaria gracilis GNS1m male)
ATGTCTGCCCCCGCTGTGAGTGCTGTTTCTAGCGTTGCGTCCAATGCCAC
CGCCGTCGCCGCCGCCGCCGCCACCGCTGTGGCGCGCTCGGCGCCGGCCG
TGCGCCAGCTTTTGAGGCCTTCTTTACGCCAATCTCCCAAGGCGCTGCGG
CGTGAAATTGCGCGCGCTGCTTCCCACAGAGGTACTCCGCTTACCGTGCG
CGAGTTGTATGCGTTTGGACAGCGTGCCTTGTCCGCTACCAATGCCACCC
GACTGCATTCTGCCCAGTGGCTGCACGCCGAGCTGCCCGTCCGACTCGCC
CATCGCGTCCTGGAACTGGATGAACTGCCGTACGGACTGGCTCGCATGCC
CTCGGTCAAGCAGGTCAAGCACATGTATGAGAACTCTTTTTGTGACATTG
TCGAGTCGGGCTTACCGAAGACCTACGGAGAGGAGCAACAGTTCTCGGAT
ATGCTGTACAATATCCGCAACCGTCACGATGATGTTGTTCGACTCATTGC
AAAAGGCGTCATTGAGCTCAAGGAACACTGCGGCCGCGGCACTTCGGACC
TTGAGATTCGCTCCTTCCTCGACCGTTTCTACATGTCTAGGATTGGCATT
CGCGTCTTGATGAGCCATCATCTCGCCCTTGGAGATCAGTCACCGGGCAT
GGCCGGTGTTATCAATCGCTTTTGTAAACCTTCCCATCTCATTGAGCAGG
CCGTCGTCGCCACAAGATCGCTCGCCTACCAGCATTACGGCGAAGCTCCG
GACGTTCAAATCAGGGGAAACACTCAGTTGCAGTTTCCGTACATTGATTC
GCACCTCTACCTCTGTTTGTTTGAATTGCTAAAGAACAGTTTGAGGGCAA
CCGTTGAAACTCATCGAGATGCCGATGTATTACCACCTGTCAGATGTATC
ATAGCCGATGGTGTGGAAGACGTTACCATAAAGATAAGTGACGAGGGTGG
AGGTTTCCGTCGCTCGGAAATGAAGGGAGTTTGGACTTATCTGTTCACTA
CTGCTAAACTACCACCCAAGCAACTTTTGGAAATGGAAGACCGATGCGAT
AGGACCAATCGACCCGACCCGATTGCCGGCTTTGGCTATGGTTTGCCACT
CAGTAGACTATACGCAAGGTACTGGGGTGGTGAACTTGCCCTGGCAAGCA
TGGAAGGTTATGGCACTGACGCTTATCTTCATCTGTCCAAACTGGGTGAC
AAGAAGGAATGTCTCACCGCTTAA
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