Ggra7708.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7708.t1
Unique Name	Ggra7708.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	377

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:112376..113506 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3880.AES82562
PFAMs	DHHC
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K20003
Evalue	6.44e-40
EggNOG OGs	COG5273@1\|root,KOG1312@2759\|Eukaryota,37S7E@33090\|Viridiplantae,3GAIG@35493\|Streptophyta,4JJER@91835\|fabids
EC	2.3.1.225
Description	Belongs to the DHHC palmitoyltransferase family
COG category	S
BRITE	ko00000,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7708	Ggra7708	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 112376..113506 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7708.t1.start1	Ggra7708.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 112376..112378 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7708.t1.CDS1	Ggra7708.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 112376..113506 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7708.t1.exon1	Ggra7708.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 112376..113506 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7708.t1.stop1	Ggra7708.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 113504..113506 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7708.t1	Ggra7708.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 112376..113506 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:112376..113506+
coding sequence from alignment at tig00000088_pilon:112376..113506+

mRNA sequence

>Ggra7708.t1 ID=Ggra7708.t1|Name=Ggra7708.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=377bp
MVNPLARVRTAGAHLMERLQCKKRMWQGAEKCCFVFEKYVMPATYVVILV
IGLTSAQKLIIPRLPLLERITSASACPKSRFFCHEPTGISFPPRTRPWAV
PVYAILAIYSWLRVMLTDPGTMTQRNLRHLTFSYDYDNVLFEATTCRTCL
LRKIARSKHCSLCNRCVARFDHHCGWVGTCVGFYNTKYFILFLALHTFMV
AHGALLCAEILSARMQELIRKKYIYVPTKEVIKSFSFRIAIAAETVVSLF
LVVLILLFFMTGSFLGYHLYLIARNTTTNETVKWSAVRAAVRRYAEEHGR
SMAEAMKEEARQDYINGEEKALEELPEFGEDGIPINAYNNGFWANAWEVF
APVSYLRYRTQRAKKSSSSETTMKTD*

spliced messenger RNA

>Ggra7708.t1 ID=Ggra7708.t1|Name=Ggra7708.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000088_pilon:112376..113506+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACCCGCTCGCCAGAGTTCGAACTGCTGGTGCCCATCTCATGGA
AAGGCTTCAATGCAAGAAGAGAATGTGGCAAGGTGCGGAAAAATGCTGTT
TTGTGTTTGAGAAATATGTCATGCCTGCAACATATGTGGTGATTCTCGTA
ATTGGGCTAACAAGCGCTCAGAAACTCATCATACCACGTCTGCCATTACT
GGAGCGTATTACATCCGCTTCAGCATGCCCAAAGTCACGCTTTTTCTGCC
ACGAGCCAACTGGCATCTCTTTCCCTCCAAGGACCCGGCCGTGGGCCGTG
CCGGTGTATGCAATTTTAGCCATATATTCGTGGTTGCGGGTCATGCTTAC
TGATCCCGGAACCATGACTCAGCGGAACCTTCGTCACCTTACTTTTTCAT
ACGACTATGATAATGTCTTGTTCGAAGCAACTACTTGTCGAACATGCCTT
CTCCGAAAGATTGCACGGTCTAAGCATTGCTCTTTGTGTAATCGATGCGT
CGCACGATTTGATCATCATTGCGGATGGGTTGGAACCTGTGTGGGGTTCT
ATAATACGAAATACTTCATCCTCTTTCTTGCTTTGCATACATTCATGGTC
GCTCATGGTGCTCTGCTTTGTGCTGAAATTCTCAGCGCAAGGATGCAGGA
GCTCATTCGAAAGAAGTACATTTATGTTCCAACCAAAGAAGTTATCAAGT
CTTTCAGCTTCAGAATTGCAATTGCGGCCGAAACAGTTGTGAGCCTGTTC
TTGGTGGTATTAATCCTTTTGTTCTTCATGACTGGCTCGTTTCTGGGCTA
TCATTTGTATCTCATAGCTCGCAATACGACAACAAACGAGACTGTGAAAT
GGTCGGCTGTGAGGGCCGCTGTGCGCCGATATGCCGAGGAACACGGCAGG
AGTATGGCGGAAGCAATGAAGGAAGAAGCAAGGCAAGACTATATAAATGG
CGAAGAAAAAGCGTTAGAAGAGCTTCCAGAGTTTGGAGAAGACGGGATCC
CTATTAACGCATATAATAATGGGTTCTGGGCAAACGCATGGGAAGTTTTT
GCTCCAGTTTCGTATCTTCGATATCGAACGCAAAGAGCAAAGAAATCGTC
GAGCTCTGAGACAACGATGAAGACGGATTAA

protein sequence of Ggra7708.t1

>Ggra7708.t1 ID=Ggra7708.t1|Name=Ggra7708.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=377bp
MVNPLARVRTAGAHLMERLQCKKRMWQGAEKCCFVFEKYVMPATYVVILV
IGLTSAQKLIIPRLPLLERITSASACPKSRFFCHEPTGISFPPRTRPWAV
PVYAILAIYSWLRVMLTDPGTMTQRNLRHLTFSYDYDNVLFEATTCRTCL
LRKIARSKHCSLCNRCVARFDHHCGWVGTCVGFYNTKYFILFLALHTFMV
AHGALLCAEILSARMQELIRKKYIYVPTKEVIKSFSFRIAIAAETVVSLF
LVVLILLFFMTGSFLGYHLYLIARNTTTNETVKWSAVRAAVRRYAEEHGR
SMAEAMKEEARQDYINGEEKALEELPEFGEDGIPINAYNNGFWANAWEVF
APVSYLRYRTQRAKKSSSSETTMKTD*

mRNA from alignment at tig00000088_pilon:112376..113506+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7708.t1 ID=Ggra7708.t1|Name=Ggra7708.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1131bp|location=Sequence derived from alignment at tig00000088_pilon:112376..113506+ (Gracilaria gracilis GNS1m male)
ATGGTGAACCCGCTCGCCAGAGTTCGAACTGCTGGTGCCCATCTCATGGA
AAGGCTTCAATGCAAGAAGAGAATGTGGCAAGGTGCGGAAAAATGCTGTT
TTGTGTTTGAGAAATATGTCATGCCTGCAACATATGTGGTGATTCTCGTA
ATTGGGCTAACAAGCGCTCAGAAACTCATCATACCACGTCTGCCATTACT
GGAGCGTATTACATCCGCTTCAGCATGCCCAAAGTCACGCTTTTTCTGCC
ACGAGCCAACTGGCATCTCTTTCCCTCCAAGGACCCGGCCGTGGGCCGTG
CCGGTGTATGCAATTTTAGCCATATATTCGTGGTTGCGGGTCATGCTTAC
TGATCCCGGAACCATGACTCAGCGGAACCTTCGTCACCTTACTTTTTCAT
ACGACTATGATAATGTCTTGTTCGAAGCAACTACTTGTCGAACATGCCTT
CTCCGAAAGATTGCACGGTCTAAGCATTGCTCTTTGTGTAATCGATGCGT
CGCACGATTTGATCATCATTGCGGATGGGTTGGAACCTGTGTGGGGTTCT
ATAATACGAAATACTTCATCCTCTTTCTTGCTTTGCATACATTCATGGTC
GCTCATGGTGCTCTGCTTTGTGCTGAAATTCTCAGCGCAAGGATGCAGGA
GCTCATTCGAAAGAAGTACATTTATGTTCCAACCAAAGAAGTTATCAAGT
CTTTCAGCTTCAGAATTGCAATTGCGGCCGAAACAGTTGTGAGCCTGTTC
TTGGTGGTATTAATCCTTTTGTTCTTCATGACTGGCTCGTTTCTGGGCTA
TCATTTGTATCTCATAGCTCGCAATACGACAACAAACGAGACTGTGAAAT
GGTCGGCTGTGAGGGCCGCTGTGCGCCGATATGCCGAGGAACACGGCAGG
AGTATGGCGGAAGCAATGAAGGAAGAAGCAAGGCAAGACTATATAAATGG
CGAAGAAAAAGCGTTAGAAGAGCTTCCAGAGTTTGGAGAAGACGGGATCC
CTATTAACGCATATAATAATGGGTTCTGGGCAAACGCATGGGAAGTTTTT
GCTCCAGTTTCGTATCTTCGATATCGAACGCAAAGAGCAAAGAAATCGTC
GAGCTCTGAGACAACGATGAAGACGGATTAA

Coding sequence (CDS) from alignment at tig00000088_pilon:112376..113506+

>Ggra7708.t1 ID=Ggra7708.t1|Name=Ggra7708.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1131bp|location=Sequence derived from alignment at tig00000088_pilon:112376..113506+ (Gracilaria gracilis GNS1m male)
ATGGTGAACCCGCTCGCCAGAGTTCGAACTGCTGGTGCCCATCTCATGGA
AAGGCTTCAATGCAAGAAGAGAATGTGGCAAGGTGCGGAAAAATGCTGTT
TTGTGTTTGAGAAATATGTCATGCCTGCAACATATGTGGTGATTCTCGTA
ATTGGGCTAACAAGCGCTCAGAAACTCATCATACCACGTCTGCCATTACT
GGAGCGTATTACATCCGCTTCAGCATGCCCAAAGTCACGCTTTTTCTGCC
ACGAGCCAACTGGCATCTCTTTCCCTCCAAGGACCCGGCCGTGGGCCGTG
CCGGTGTATGCAATTTTAGCCATATATTCGTGGTTGCGGGTCATGCTTAC
TGATCCCGGAACCATGACTCAGCGGAACCTTCGTCACCTTACTTTTTCAT
ACGACTATGATAATGTCTTGTTCGAAGCAACTACTTGTCGAACATGCCTT
CTCCGAAAGATTGCACGGTCTAAGCATTGCTCTTTGTGTAATCGATGCGT
CGCACGATTTGATCATCATTGCGGATGGGTTGGAACCTGTGTGGGGTTCT
ATAATACGAAATACTTCATCCTCTTTCTTGCTTTGCATACATTCATGGTC
GCTCATGGTGCTCTGCTTTGTGCTGAAATTCTCAGCGCAAGGATGCAGGA
GCTCATTCGAAAGAAGTACATTTATGTTCCAACCAAAGAAGTTATCAAGT
CTTTCAGCTTCAGAATTGCAATTGCGGCCGAAACAGTTGTGAGCCTGTTC
TTGGTGGTATTAATCCTTTTGTTCTTCATGACTGGCTCGTTTCTGGGCTA
TCATTTGTATCTCATAGCTCGCAATACGACAACAAACGAGACTGTGAAAT
GGTCGGCTGTGAGGGCCGCTGTGCGCCGATATGCCGAGGAACACGGCAGG
AGTATGGCGGAAGCAATGAAGGAAGAAGCAAGGCAAGACTATATAAATGG
CGAAGAAAAAGCGTTAGAAGAGCTTCCAGAGTTTGGAGAAGACGGGATCC
CTATTAACGCATATAATAATGGGTTCTGGGCAAACGCATGGGAAGTTTTT
GCTCCAGTTTCGTATCTTCGATATCGAACGCAAAGAGCAAAGAAATCGTC
GAGCTCTGAGACAACGATGAAGACGGATTAA