Ggra7706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7706.t1
Unique NameGgra7706.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:108643..110444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707024.1
PFAMsFBPase
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01507,ko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00190,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00190,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
Evalue2.5e-59
EggNOG OGsCOG0158@1|root,KOG1458@2759|Eukaryota
EC3.1.3.11,3.6.1.1
Descriptionfructose 1,6-bisphosphate 1-phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7706Ggra7706Gracilaria gracilis GNS1m malegenetig00000088_pilon 108643..110444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7706.t1Ggra7706.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 108643..110444 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7706.t1.start1Ggra7706.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 108643..108645 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7706.t1.CDS1Ggra7706.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 108643..108956 +
Ggra7706.t1.CDS2Ggra7706.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 109301..110244 +
Ggra7706.t1.CDS3Ggra7706.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000088_pilon 110338..110444 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7706.t1.exon1Ggra7706.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 108643..108956 +
Ggra7706.t1.exon2Ggra7706.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 109301..110244 +
Ggra7706.t1.exon3Ggra7706.t1.exon3Gracilaria gracilis GNS1m maleexontig00000088_pilon 110338..110444 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7706.t1.intron1Ggra7706.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 108957..109300 +
Ggra7706.t1.intron2Ggra7706.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000088_pilon 110245..110337 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7706.t1.stop1Ggra7706.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 110442..110444 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7706.t1 ID=Ggra7706.t1|Name=Ggra7706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MTQVLFEIWSYRPSVSVVVRICIPVAFVSYRLVVLYQWVREAAAGCTQQL
ERRAMLWLAAANLGFWSVVLFYVLLLKVCPPYFLAARAPASSARACVSRA
SATPALDTARHPSSAKNCDQPPATPPRTPPLTPPSPEPDLSSTTFNATTF
PSHVRAHCSHAPKHSSQHLVRLLDDISTVTHSISSYVSQHHHNPYSPVLD
HNVVTTRLYHALCHDGYACIILAKDRTPLTFCDSAVHGPYVLMLTPLDAD
PCEQHLSCATSFSVYHRVSSPGLCGTQQDLQQNLADQVAAGYILYSSATT
LTYTLGQAAFSFCLHPVANQYFLHASRPLNFASGSDMYCEYHKVTADKNL
GAVAKNVITRLGGRLFDTGCFIPDFDAAIRSGGIVMWYDLHLLCEAGPMA
LLAEQLGGRAIDANCSRILDLAADADNVHKRITFLAGPAHIIDSIESQVS
LQLS*
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spliced messenger RNA

>Ggra7706.t1 ID=Ggra7706.t1|Name=Ggra7706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000088_pilon:108643..110444+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAGGTGCTGTTCGAGATCTGGAGCTACCGGCCGAGCGTGAGCGT
GGTGGTACGCATCTGCATCCCGGTGGCGTTCGTGTCGTACCGGCTGGTGG
TGCTGTACCAGTGGGTGCGCGAGGCGGCCGCGGGCTGCACGCAGCAGCTG
GAGCGGCGCGCCATGCTGTGGCTGGCCGCGGCCAACTTGGGCTTCTGGAG
CGTTGTGCTGTTCTACGTGCTGCTGCTCAAGGTGTGCCCGCCCTACTTTC
TGGCGGCGCGCGCGCCCGCGAGCAGCGCGCGCGCCTGCGTCTCCCGCGCC
AGCGCCACCCCGGCCCTCGACACCGCCCGCCATCCCTCCAGTGCCAAGAA
CTGCGACCAACCGCCTGCCACTCCGCCCCGAACCCCACCGCTCACCCCCC
CGTCCCCGGAACCTGACCTGTCCTCCACCACTTTCAACGCCACCACGTTC
CCCTCCCACGTTCGCGCCCATTGCTCTCACGCGCCCAAGCACTCGTCTCA
ACACCTCGTTCGATTGCTCGATGACATTTCCACAGTCACCCATTCCATCT
CCTCGTATGTATCACAGCATCACCACAATCCTTACAGTCCTGTTCTTGAT
CACAATGTGGTCACCACCCGCTTGTATCACGCCTTGTGTCATGATGGCTA
CGCTTGCATCATTCTTGCCAAGGACCGTACCCCGCTTACCTTCTGTGATT
CCGCCGTGCATGGGCCATACGTCCTCATGCTGACCCCGCTGGATGCTGAC
CCCTGTGAACAGCACTTGTCTTGTGCCACCTCCTTCAGCGTGTACCACCG
TGTTTCCTCACCCGGCCTGTGTGGCACCCAACAAGACCTGCAACAAAACC
TGGCCGATCAAGTCGCAGCCGGCTACATTCTCTACTCCTCCGCCACAACT
CTCACCTACACTCTTGGCCAAGCTGCCTTCTCCTTCTGTCTTCATCCAGT
TGCAAATCAATACTTCCTGCACGCCAGCCGCCCTCTCAACTTTGCCAGCG
GTAGTGATATGTATTGCGAGTACCACAAAGTCACAGCGGATAAAAATTTG
GGTGCTGTTGCGAAAAACGTCATCACCCGTTTGGGTGGGAGACTGTTTGA
CACCGGTTGCTTCATCCCCGACTTTGACGCCGCCATACGTTCGGGGGGAA
TCGTCATGTGGTACGACCTGCACCTGTTGTGTGAAGCGGGCCCTATGGCT
CTGCTGGCTGAACAGCTTGGTGGACGCGCCATTGACGCCAACTGCAGTCG
AATTTTAGATCTGGCCGCTGATGCAGACAACGTTCATAAAAGAATAACAT
TTCTGGCGGGCCCGGCCCACATAATCGACTCCATAGAGTCCCAAGTATCT
CTTCAACTGTCATAG
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protein sequence of Ggra7706.t1

>Ggra7706.t1 ID=Ggra7706.t1|Name=Ggra7706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MTQVLFEIWSYRPSVSVVVRICIPVAFVSYRLVVLYQWVREAAAGCTQQL
ERRAMLWLAAANLGFWSVVLFYVLLLKVCPPYFLAARAPASSARACVSRA
SATPALDTARHPSSAKNCDQPPATPPRTPPLTPPSPEPDLSSTTFNATTF
PSHVRAHCSHAPKHSSQHLVRLLDDISTVTHSISSYVSQHHHNPYSPVLD
HNVVTTRLYHALCHDGYACIILAKDRTPLTFCDSAVHGPYVLMLTPLDAD
PCEQHLSCATSFSVYHRVSSPGLCGTQQDLQQNLADQVAAGYILYSSATT
LTYTLGQAAFSFCLHPVANQYFLHASRPLNFASGSDMYCEYHKVTADKNL
GAVAKNVITRLGGRLFDTGCFIPDFDAAIRSGGIVMWYDLHLLCEAGPMA
LLAEQLGGRAIDANCSRILDLAADADNVHKRITFLAGPAHIIDSIESQVS
LQLS*
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mRNA from alignment at tig00000088_pilon:108643..110444+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7706.t1 ID=Ggra7706.t1|Name=Ggra7706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1802bp|location=Sequence derived from alignment at tig00000088_pilon:108643..110444+ (Gracilaria gracilis GNS1m male)
ATGACGCAGGTGCTGTTCGAGATCTGGAGCTACCGGCCGAGCGTGAGCGT
GGTGGTACGCATCTGCATCCCGGTGGCGTTCGTGTCGTACCGGCTGGTGG
TGCTGTACCAGTGGGTGCGCGAGGCGGCCGCGGGCTGCACGCAGCAGCTG
GAGCGGCGCGCCATGCTGTGGCTGGCCGCGGCCAACTTGGGCTTCTGGAG
CGTTGTGCTGTTCTACGTGCTGCTGCTCAAGGTGTGCCCGCCCTACTTTC
TGGCGGCGCGCGCGCCCGCGAGCAGCGCGCGCGCCTGCGTCTCCCGCGCC
AGCGCCACCCCGGCGTGACAGCCCGCCCGCGCGCACAAAAATctgcgcgc
gccgcgctgtgctgtcgcgcgcCCattggcgcgcgcgcgaagcgccgcaa
cggcgcgccccaacagcagcaccggtcgaaccgtcacgtcaaatctctgc
gcgcgctttaaaacccaaaacactcctgtcctgtcagttcttcgccgccc
cccaccccccccaccaccactaccaccaccactaccaccaccactaccac
caccactaccaccaccactaccaccaccactaccaccaccacccccacca
ATATGCAGCACCCACACCACAGTTCGCGTTCGCTTACTTCCTCTCTCATA
TCGCTCAGCCTCGACACCGCCCGCCATCCCTCCAGTGCCAAGAACTGCGA
CCAACCGCCTGCCACTCCGCCCCGAACCCCACCGCTCACCCCCCCGTCCC
CGGAACCTGACCTGTCCTCCACCACTTTCAACGCCACCACGTTCCCCTCC
CACGTTCGCGCCCATTGCTCTCACGCGCCCAAGCACTCGTCTCAACACCT
CGTTCGATTGCTCGATGACATTTCCACAGTCACCCATTCCATCTCCTCGT
ATGTATCACAGCATCACCACAATCCTTACAGTCCTGTTCTTGATCACAAT
GTGGTCACCACCCGCTTGTATCACGCCTTGTGTCATGATGGCTACGCTTG
CATCATTCTTGCCAAGGACCGTACCCCGCTTACCTTCTGTGATTCCGCCG
TGCATGGGCCATACGTCCTCATGCTGACCCCGCTGGATGCTGACCCCTGT
GAACAGCACTTGTCTTGTGCCACCTCCTTCAGCGTGTACCACCGTGTTTC
CTCACCCGGCCTGTGTGGCACCCAACAAGACCTGCAACAAAACCTGGCCG
ATCAAGTCGCAGCCGGCTACATTCTCTACTCCTCCGCCACAACTCTCACC
TACACTCTTGGCCAAGCTGCCTTCTCCTTCTGTCTTCATCCAGTTGCAAA
TCAATACTTCCTGCACGCCAGCCGCCCTCTCAACTTTGCCAGCGGTAGTG
ATATGTATTGCGAGTACCACAAAGTCACAGCGGATAAAAATTTGGGTGCT
GTTGCGAAAAACGTCATCACCCGTTTGGGTGGGAGACTGTTTGACACCGG
TTGCTTCATCCCCGACTTTGACGCCGCCATACGTTCGGGGGGAATCGTCA
TGTGGTACGACCTGCACCTGTTGTGTGAAGCGGGCCCTATGGCTCTGCTG
GCTGAACAGCTTGGTGGACGCGCCATTGACGCCAACTGCAGTCGAATTTT
AGGTATGTGTCCCTTTTCCCTTCATTCACCCGTCTACAAGCACCTTCTCT
GCAGCCGTTGACTGACCAATATCAATCGTTTCAATCTCAAAACAGATCTG
GCCGCTGATGCAGACAACGTTCATAAAAGAATAACATTTCTGGCGGGCCC
GGCCCACATAATCGACTCCATAGAGTCCCAAGTATCTCTTCAACTGTCAT
AG
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Coding sequence (CDS) from alignment at tig00000088_pilon:108643..110444+

>Ggra7706.t1 ID=Ggra7706.t1|Name=Ggra7706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000088_pilon:108643..110444+ (Gracilaria gracilis GNS1m male)
ATGACGCAGGTGCTGTTCGAGATCTGGAGCTACCGGCCGAGCGTGAGCGT
GGTGGTACGCATCTGCATCCCGGTGGCGTTCGTGTCGTACCGGCTGGTGG
TGCTGTACCAGTGGGTGCGCGAGGCGGCCGCGGGCTGCACGCAGCAGCTG
GAGCGGCGCGCCATGCTGTGGCTGGCCGCGGCCAACTTGGGCTTCTGGAG
CGTTGTGCTGTTCTACGTGCTGCTGCTCAAGGTGTGCCCGCCCTACTTTC
TGGCGGCGCGCGCGCCCGCGAGCAGCGCGCGCGCCTGCGTCTCCCGCGCC
AGCGCCACCCCGGCCCTCGACACCGCCCGCCATCCCTCCAGTGCCAAGAA
CTGCGACCAACCGCCTGCCACTCCGCCCCGAACCCCACCGCTCACCCCCC
CGTCCCCGGAACCTGACCTGTCCTCCACCACTTTCAACGCCACCACGTTC
CCCTCCCACGTTCGCGCCCATTGCTCTCACGCGCCCAAGCACTCGTCTCA
ACACCTCGTTCGATTGCTCGATGACATTTCCACAGTCACCCATTCCATCT
CCTCGTATGTATCACAGCATCACCACAATCCTTACAGTCCTGTTCTTGAT
CACAATGTGGTCACCACCCGCTTGTATCACGCCTTGTGTCATGATGGCTA
CGCTTGCATCATTCTTGCCAAGGACCGTACCCCGCTTACCTTCTGTGATT
CCGCCGTGCATGGGCCATACGTCCTCATGCTGACCCCGCTGGATGCTGAC
CCCTGTGAACAGCACTTGTCTTGTGCCACCTCCTTCAGCGTGTACCACCG
TGTTTCCTCACCCGGCCTGTGTGGCACCCAACAAGACCTGCAACAAAACC
TGGCCGATCAAGTCGCAGCCGGCTACATTCTCTACTCCTCCGCCACAACT
CTCACCTACACTCTTGGCCAAGCTGCCTTCTCCTTCTGTCTTCATCCAGT
TGCAAATCAATACTTCCTGCACGCCAGCCGCCCTCTCAACTTTGCCAGCG
GTAGTGATATGTATTGCGAGTACCACAAAGTCACAGCGGATAAAAATTTG
GGTGCTGTTGCGAAAAACGTCATCACCCGTTTGGGTGGGAGACTGTTTGA
CACCGGTTGCTTCATCCCCGACTTTGACGCCGCCATACGTTCGGGGGGAA
TCGTCATGTGGTACGACCTGCACCTGTTGTGTGAAGCGGGCCCTATGGCT
CTGCTGGCTGAACAGCTTGGTGGACGCGCCATTGACGCCAACTGCAGTCG
AATTTTAGATCTGGCCGCTGATGCAGACAACGTTCATAAAAGAATAACAT
TTCTGGCGGGCCCGGCCCACATAATCGACTCCATAGAGTCCCAAGTATCT
CTTCAACTGTCATAG
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