Ggra7702.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7702.t1
Unique NameGgra7702.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:103680..104088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7702Ggra7702Gracilaria gracilis GNS1m malegenetig00000088_pilon 103680..104088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7702.t1Ggra7702.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 103680..104088 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7702.t1.start1Ggra7702.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 103680..103682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7702.t1.CDS1Ggra7702.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 103680..103942 +
Ggra7702.t1.CDS2Ggra7702.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 104040..104088 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7702.t1.exon1Ggra7702.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 103680..103942 +
Ggra7702.t1.exon2Ggra7702.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 104040..104088 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7702.t1.intron1Ggra7702.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 103943..104039 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7702.t1.stop1Ggra7702.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 104086..104088 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7702.t1 ID=Ggra7702.t1|Name=Ggra7702.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=104bp
MISARRPPLRVAKPPPRPLFKPLPPAARIAAQSAVAFAAVVALAAYATFT
LNRVLGQRRRRMAANRRFKLSAFDDALVAFESFSSLNIKLRVGVALVYLI
LFN*
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spliced messenger RNA

>Ggra7702.t1 ID=Ggra7702.t1|Name=Ggra7702.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp|location=Sequence derived from alignment at tig00000088_pilon:103680..104088+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATCTGCGCGGCGTCCCCCTCTGCGCGTGGCCAAGCCGCCGCCACG
ACCCTTGTTCAAGCCGCTGCCGCCGGCCGCGCGTATTGCCGCGCAGAGTG
CTGTGGCGTTTGCTGCCGTCGTTGCGCTTGCTGCCTATGCTACCTTTACT
TTGAATCGTGTGCTGGGTCAACGACGTCGACGAATGGCCGCCAATCGCCG
GTTTAAACTCTCCGCCTTCGACGACGCCCTGGTTGCCTTTGAGAGCTTTT
CGTCGTTGAACATTAAACTTCGTGTTGGAGTTGCGCTCGTGTACTTGATA
CTATTTAACTGA
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protein sequence of Ggra7702.t1

>Ggra7702.t1 ID=Ggra7702.t1|Name=Ggra7702.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=104bp
MISARRPPLRVAKPPPRPLFKPLPPAARIAAQSAVAFAAVVALAAYATFT
LNRVLGQRRRRMAANRRFKLSAFDDALVAFESFSSLNIKLRVGVALVYLI
LFN*
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mRNA from alignment at tig00000088_pilon:103680..104088+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7702.t1 ID=Ggra7702.t1|Name=Ggra7702.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=409bp|location=Sequence derived from alignment at tig00000088_pilon:103680..104088+ (Gracilaria gracilis GNS1m male)
ATGATATCTGCGCGGCGTCCCCCTCTGCGCGTGGCCAAGCCGCCGCCACG
ACCCTTGTTCAAGCCGCTGCCGCCGGCCGCGCGTATTGCCGCGCAGAGTG
CTGTGGCGTTTGCTGCCGTCGTTGCGCTTGCTGCCTATGCTACCTTTACT
TTGAATCGTGTGCTGGGTCAACGACGTCGACGAATGGCCGCCAATCGCCG
GTTTAAACTCTCCGCCTTCGACGACGCCCTGGTTGCCTTTGAGAGCTTTT
CGTCGTTGAACATGTGAGTCACTCCCgtttgtgtgcgtgcgtgttgtttg
tgtgtTCGCCCGTGTGCTCTCGGCGTTGTACTTGTAATAACATTTCTTTC
CGGGCATTAGTAAACTTCGTGTTGGAGTTGCGCTCGTGTACTTGATACTA
TTTAACTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:103680..104088+

>Ggra7702.t1 ID=Ggra7702.t1|Name=Ggra7702.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=312bp|location=Sequence derived from alignment at tig00000088_pilon:103680..104088+ (Gracilaria gracilis GNS1m male)
ATGATATCTGCGCGGCGTCCCCCTCTGCGCGTGGCCAAGCCGCCGCCACG
ACCCTTGTTCAAGCCGCTGCCGCCGGCCGCGCGTATTGCCGCGCAGAGTG
CTGTGGCGTTTGCTGCCGTCGTTGCGCTTGCTGCCTATGCTACCTTTACT
TTGAATCGTGTGCTGGGTCAACGACGTCGACGAATGGCCGCCAATCGCCG
GTTTAAACTCTCCGCCTTCGACGACGCCCTGGTTGCCTTTGAGAGCTTTT
CGTCGTTGAACATTAAACTTCGTGTTGGAGTTGCGCTCGTGTACTTGATA
CTATTTAACTGA
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