Ggra7699.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7699.t1
Unique NameGgra7699.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length102
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:89507..89888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7699Ggra7699Gracilaria gracilis GNS1m malegenetig00000088_pilon 89507..89888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7699.t1Ggra7699.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 89507..89888 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7699.t1.start1Ggra7699.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 89507..89509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7699.t1.CDS1Ggra7699.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 89507..89729 +
Ggra7699.t1.CDS2Ggra7699.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 89806..89888 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7699.t1.exon1Ggra7699.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 89507..89729 +
Ggra7699.t1.exon2Ggra7699.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 89806..89888 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7699.t1.intron1Ggra7699.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 89730..89805 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7699.t1.stop1Ggra7699.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 89886..89888 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7699.t1 ID=Ggra7699.t1|Name=Ggra7699.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=102bp
MQASVDLQRAQSDTEFRKLSRSEREKQLFDDVLDSVEKCKKARESNDEEV
QRMGELLLERKKQAFRRFMESGAEGVPSYVIVVLEMLSRNAPGGGGNDHL
P*
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spliced messenger RNA

>Ggra7699.t1 ID=Ggra7699.t1|Name=Ggra7699.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=306bp|location=Sequence derived from alignment at tig00000088_pilon:89507..89888+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgcaggcctcagttgatttgcagagggcacagagcGACACGGAGTTCAG
AAAGCTGTCCAGATCTGAAAGGGAGAAGCAACTGTTTGACGATGTGTTGG
ACAGCGTAGAGAAGTGCAAGAAAGCGAGAGAAAGTAATGACGAGGAGGTC
CAGCGCATGGGTGAGCTTCTCTTGGAACGAAAGAAGCAGGCCTTTAGGAG
ATTCATGGAATCAGGAGCTGAAGGCGTACCATCATATGTGATCGTGGTGC
TTGAAATGCTTTCAAGAAATGCACCGGGTGGTGGTGGGAACGATCACCTT
CCGTAG
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protein sequence of Ggra7699.t1

>Ggra7699.t1 ID=Ggra7699.t1|Name=Ggra7699.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=102bp
MQASVDLQRAQSDTEFRKLSRSEREKQLFDDVLDSVEKCKKARESNDEEV
QRMGELLLERKKQAFRRFMESGAEGVPSYVIVVLEMLSRNAPGGGGNDHL
P*
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mRNA from alignment at tig00000088_pilon:89507..89888+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7699.t1 ID=Ggra7699.t1|Name=Ggra7699.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=382bp|location=Sequence derived from alignment at tig00000088_pilon:89507..89888+ (Gracilaria gracilis GNS1m male)
atgcaggcctcagttgatttgcagagggcacagagcGACACGGAGTTCAG
AAAGCTGTCCAGATCTGAAAGGGAGAAGCAACTGTTTGACGATGTGTTGG
ACAGCGTAGAGAAGTGCAAGAAAGCGAGAGAAAGTAATGACGAGGAGGTC
CAGCGCATGGGTGAGCTTCTCTTGGAACGAAAGAAGCAGGCCTTTAGGAG
ATTCATGGAATCAGGAGCTGAAGGTAAGGAGAGCTGAAGGAGTCTAAGAA
TATGAAGCTAACCTTTCCGGTTTTACGTTTTCTGTGTTTATCTGTCTAGG
CGTACCATCATATGTGATCGTGGTGCTTGAAATGCTTTCAAGAAATGCAC
CGGGTGGTGGTGGGAACGATCACCTTCCGTAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:89507..89888+

>Ggra7699.t1 ID=Ggra7699.t1|Name=Ggra7699.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=306bp|location=Sequence derived from alignment at tig00000088_pilon:89507..89888+ (Gracilaria gracilis GNS1m male)
atgcaggcctcagttgatttgcagagggcacagagcGACACGGAGTTCAG
AAAGCTGTCCAGATCTGAAAGGGAGAAGCAACTGTTTGACGATGTGTTGG
ACAGCGTAGAGAAGTGCAAGAAAGCGAGAGAAAGTAATGACGAGGAGGTC
CAGCGCATGGGTGAGCTTCTCTTGGAACGAAAGAAGCAGGCCTTTAGGAG
ATTCATGGAATCAGGAGCTGAAGGCGTACCATCATATGTGATCGTGGTGC
TTGAAATGCTTTCAAGAAATGCACCGGGTGGTGGTGGGAACGATCACCTT
CCGTAG
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