Ggra7685.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7685.t1
Unique NameGgra7685.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:61537..62456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000013488
PFAMsSld5
Max annot lvl121069|Pythiales
Evalue6.11e-50
EggNOG OGsCOG5230@1|root,KOG3303@2759|Eukaryota,1MFH7@121069|Pythiales
DescriptionDNA replication complex GINS protein PSF1. Source PGD
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7685Ggra7685Gracilaria gracilis GNS1m malegenetig00000088_pilon 61537..62456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7685.t1Ggra7685.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 61537..62456 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7685.t1.start1Ggra7685.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 61537..61539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7685.t1.CDS1Ggra7685.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 61537..61679 +
Ggra7685.t1.CDS2Ggra7685.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000088_pilon 61809..61887 +
Ggra7685.t1.CDS3Ggra7685.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000088_pilon 61953..62456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7685.t1.exon1Ggra7685.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 61537..61679 +
Ggra7685.t1.exon2Ggra7685.t1.exon2Gracilaria gracilis GNS1m maleexontig00000088_pilon 61809..61887 +
Ggra7685.t1.exon3Ggra7685.t1.exon3Gracilaria gracilis GNS1m maleexontig00000088_pilon 61953..62456 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7685.t1.intron1Ggra7685.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000088_pilon 61680..61808 +
Ggra7685.t1.intron2Ggra7685.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000088_pilon 61888..61952 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7685.t1.stop1Ggra7685.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 62454..62456 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7685.t1 ID=Ggra7685.t1|Name=Ggra7685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MGAVWSFRAPTETKSVRAKLQDLPSNPNRMQQAITTNGINCLDTPSRTLP
MQYGRKASQLLVELRKTKWLPPYSDGGLRQVAAEIKELIEPFLEIMQNHG
RSLRESDYYHMGAVVFFRSIQRNKRCALAYLMNRVRRIQQYRWEMGACAA
THLADNMSAPEAHFLKEYNNLIGRYSQTVNLDLTADAQPPRDLFIEVRVK
HDCGSVLTDSGPVALKPGTAHFIKRSDVEHLIRQGALEHIV*
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spliced messenger RNA

>Ggra7685.t1 ID=Ggra7685.t1|Name=Ggra7685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000088_pilon:61537..62456+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCCGTATGGTCCTTCCGCGCTCCAACCGAAACCAAAAGTGTTCG
CGCCAAATTGCAGGACCTGCCTTCGAACCCAAACCGGATGCAACAAGCCA
TCACCACCAATGGCATAAACTGTTTAGACACGCCGTCCAGGACACTTCCA
ATGCAATACGGGCGAAAAGCTTCACAGCTCCTAGTCGAACTTCGAAAAAC
CAAATGGCTCCCGCCGTACAGCGATGGCGGACTGCGACAAGTTGCCGCCG
AGATAAAGGAGTTGATCGAACCTTTTCTCGAAATCATGCAAAACCACGGC
AGGTCATTGCGGGAAAGCGACTACTATCACATGGGTGCCGTTGTCTTCTT
CCGTTCTATTCAGCGCAACAAGCGCTGTGCACTAGCTTATTTAATGAACC
GCGTAAGACGAATCCAGCAATACCGATGGGAAATGGGTGCTTGTGCAGCA
ACACATCTTGCTGATAACATGTCTGCACCTGAAGCTCATTTCTTAAAGGA
ATACAACAATCTTATAGGCCGTTATTCTCAAACAGTTAATCTCGATTTAA
CAGCTGATGCTCAACCTCCGCGGGACCTCTTCATCGAAGTCCGTGTGAAA
CACGACTGCGGTTCCGTTCTCACAGATTCTGGTCCAGTTGCCCTCAAGCC
CGGAACGGCCCACTTCATAAAGCGCTCTGACGTTGAACATCTCATTCGAC
AGGGAGCGCTTGAACACATTGTATAG
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protein sequence of Ggra7685.t1

>Ggra7685.t1 ID=Ggra7685.t1|Name=Ggra7685.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MGAVWSFRAPTETKSVRAKLQDLPSNPNRMQQAITTNGINCLDTPSRTLP
MQYGRKASQLLVELRKTKWLPPYSDGGLRQVAAEIKELIEPFLEIMQNHG
RSLRESDYYHMGAVVFFRSIQRNKRCALAYLMNRVRRIQQYRWEMGACAA
THLADNMSAPEAHFLKEYNNLIGRYSQTVNLDLTADAQPPRDLFIEVRVK
HDCGSVLTDSGPVALKPGTAHFIKRSDVEHLIRQGALEHIV*
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mRNA from alignment at tig00000088_pilon:61537..62456+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7685.t1 ID=Ggra7685.t1|Name=Ggra7685.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=920bp|location=Sequence derived from alignment at tig00000088_pilon:61537..62456+ (Gracilaria gracilis GNS1m male)
ATGGGGGCCGTATGGTCCTTCCGCGCTCCAACCGAAACCAAAAGTGTTCG
CGCCAAATTGCAGGACCTGCCTTCGAACCCAAACCGGATGCAACAAGCCA
TCACCACCAATGGCATAAACTGTTTAGACACGCCGTCCAGGACGTCAGAG
CTGAACTCCGTCCACTGCACGAAATCTTGAGCATCTTCTCCGCGGCTTGA
AATCTGCTTGCATATTGACCTTGTCGCCGTTCACATATTGCTGGCTCTTG
CACTTCCTCCTCAAGTACATAGACTTCCAATGCAATACGGGCGAAAAGCT
TCACAGCTCCTAGTCGAACTTCGAAAAACCAAATGGCTCCCGCCGTACAG
CGTAAGTATCTCCCTCTACATTTAGCATCCAACCGCAGTGAAAACTGACA
CTAACGTCGTACACAGGATGGCGGACTGCGACAAGTTGCCGCCGAGATAA
AGGAGTTGATCGAACCTTTTCTCGAAATCATGCAAAACCACGGCAGGTCA
TTGCGGGAAAGCGACTACTATCACATGGGTGCCGTTGTCTTCTTCCGTTC
TATTCAGCGCAACAAGCGCTGTGCACTAGCTTATTTAATGAACCGCGTAA
GACGAATCCAGCAATACCGATGGGAAATGGGTGCTTGTGCAGCAACACAT
CTTGCTGATAACATGTCTGCACCTGAAGCTCATTTCTTAAAGGAATACAA
CAATCTTATAGGCCGTTATTCTCAAACAGTTAATCTCGATTTAACAGCTG
ATGCTCAACCTCCGCGGGACCTCTTCATCGAAGTCCGTGTGAAACACGAC
TGCGGTTCCGTTCTCACAGATTCTGGTCCAGTTGCCCTCAAGCCCGGAAC
GGCCCACTTCATAAAGCGCTCTGACGTTGAACATCTCATTCGACAGGGAG
CGCTTGAACACATTGTATAG
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Coding sequence (CDS) from alignment at tig00000088_pilon:61537..62456+

>Ggra7685.t1 ID=Ggra7685.t1|Name=Ggra7685.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000088_pilon:61537..62456+ (Gracilaria gracilis GNS1m male)
ATGGGGGCCGTATGGTCCTTCCGCGCTCCAACCGAAACCAAAAGTGTTCG
CGCCAAATTGCAGGACCTGCCTTCGAACCCAAACCGGATGCAACAAGCCA
TCACCACCAATGGCATAAACTGTTTAGACACGCCGTCCAGGACACTTCCA
ATGCAATACGGGCGAAAAGCTTCACAGCTCCTAGTCGAACTTCGAAAAAC
CAAATGGCTCCCGCCGTACAGCGATGGCGGACTGCGACAAGTTGCCGCCG
AGATAAAGGAGTTGATCGAACCTTTTCTCGAAATCATGCAAAACCACGGC
AGGTCATTGCGGGAAAGCGACTACTATCACATGGGTGCCGTTGTCTTCTT
CCGTTCTATTCAGCGCAACAAGCGCTGTGCACTAGCTTATTTAATGAACC
GCGTAAGACGAATCCAGCAATACCGATGGGAAATGGGTGCTTGTGCAGCA
ACACATCTTGCTGATAACATGTCTGCACCTGAAGCTCATTTCTTAAAGGA
ATACAACAATCTTATAGGCCGTTATTCTCAAACAGTTAATCTCGATTTAA
CAGCTGATGCTCAACCTCCGCGGGACCTCTTCATCGAAGTCCGTGTGAAA
CACGACTGCGGTTCCGTTCTCACAGATTCTGGTCCAGTTGCCCTCAAGCC
CGGAACGGCCCACTTCATAAAGCGCTCTGACGTTGAACATCTCATTCGAC
AGGGAGCGCTTGAACACATTGTATAG
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