Ggra7660.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7660.t1
Unique NameGgra7660.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length582
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000206_piloncontigtig00000206_pilon:126747..128492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13037.EHJ76324
Preferred nameCHM
PFAMsGDI
Max annot lvl33208|Metazoa
GOsGO:0000922,GO:0001505,GO:0001568,GO:0001944,GO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005818,GO:0005819,GO:0005829,GO:0005856,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006836,GO:0006886,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007600,GO:0007601,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0031267,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044877,GO:0045184,GO:0045202,GO:0046903,GO:0046907,GO:0048471,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072657,GO:0090150,GO:0097354,GO:0097458,GO:0097708,GO:0098793,GO:0098916,GO:0099080,GO:0099503,GO:0099536,GO:0099537,GO:0099643,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Evalue2.21e-50
EggNOG OGsCOG5044@1|root,KOG4405@2759|Eukaryota,3985T@33154|Opisthokonta,3BGRA@33208|Metazoa,3CV49@33213|Bilateria,41TND@6656|Arthropoda,3SGBB@50557|Insecta,441IJ@7088|Lepidoptera
DescriptionGDP dissociation inhibitor
COG categoryTU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7660Ggra7660Gracilaria gracilis GNS1m malegenetig00000206_pilon 126747..128492 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7660.t1.stop1Ggra7660.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000206_pilon 126747..126749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7660.t1.CDS1Ggra7660.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000206_pilon 126747..128492 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7660.t1.exon1Ggra7660.t1.exon1Gracilaria gracilis GNS1m maleexontig00000206_pilon 126747..128492 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7660.t1.start1Ggra7660.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000206_pilon 128490..128492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7660.t1Ggra7660.t1Gracilaria gracilis GNS1m malepolypeptidetig00000206_pilon 126747..128492 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7660.t1 ID=Ggra7660.t1|Name=Ggra7660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp
MPRATAHQPLTDTDYDAVVIGTDLPQAILAAALSISGSRVLHLDANELYG
GRWATIQVKALEDAIQDVEQDARDEAASPSSEIQADSVIGNHFPDHEFHP
FLPMSQYHQFFPLGARRLQSARTTELYSSISSCLVDLVPRPIMSAGTMIE
LLVRTNVGHYVDFRALDALYVQFPGSNGLQRVPGSRADVFQNAFITMPEK
RLMMRYVTRCYETILARKERLEEDENFAQDDDMDDTSLQEDMETMRLTHK
LQTFLTHSILFSVGGKQLSKQEGMNHVYDYQASVMRFGTKTPFLYPNFGT
GELSQAFCRLCAVHGGTYVLRRGATGLVRPKGDQMETNTEAADYRLGVIT
TAGDIVRTKYVFVPGGLMKQEPESPVDVWHAVVVLDGSILKANQPERAMI
TIPRGTVGNYTSAVRVRQLDSTVMVCPQGKYVLYAETIEEGGTEQDLIRV
LERYVVMSATVLENKREEREDGDQEAEGQSETDSKSDVKPNCLWGISYAR
PCVKSEAVAEDVILVSASEREHDAENAVLEAQRCFKIVHPDGEFLPQRKD
DVGQVSNGVAEPEKASSDTEEQFGIRETRSQ*
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spliced messenger RNA

>Ggra7660.t1 ID=Ggra7660.t1|Name=Ggra7660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000206_pilon:126747..128492- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAGAGCTACGGCACATCAGCCTTTAACGGACACCGACTATGATGC
AGTTGTCATTGGCACCGATCTTCCCCAGGCAATTCTTGCAGCAGCTTTGT
CAATTTCTGGTTCTCGAGTTTTACATCTAGATGCGAATGAGCTCTATGGT
GGAAGGTGGGCTACAATCCAAGTCAAAGCATTGGAAGATGCTATCCAAGA
TGTCGAACAGGATGCGCGCGATGAAGCCGCGTCTCCCTCATCTGAGATAC
AAGCAGATTCTGTAATAGGTAACCATTTCCCCGACCATGAGTTCCACCCG
TTTCTTCCTATGTCCCAGTACCATCAGTTTTTTCCCCTTGGGGCGCGCCG
ACTGCAGAGTGCTCGTACTACAGAGCTGTATTCATCTATATCTTCATGTC
TGGTTGATCTTGTTCCACGTCCAATTATGTCGGCAGGTACCATGATCGAG
TTGCTGGTGCGCACTAATGTTGGCCATTACGTTGACTTTCGCGCACTGGA
CGCTCTGTATGTACAATTTCCGGGATCTAACGGTTTGCAACGCGTGCCTG
GAAGCCGCGCTGATGTGTTTCAGAACGCGTTTATAACAATGCCTGAGAAA
AGGCTGATGATGCGGTATGTGACAAGATGCTATGAGACTATCTTAGCAAG
GAAAGAACGGCTAGAGGAAGATGAGAACTTCGCCCAAGACGATGACATGG
ACGACACATCTCTTCAAGAAGACATGGAAACCATGCGGTTAACACATAAG
TTACAGACGTTCCTCACCCATTCTATCTTGTTTTCTGTCGGCGGGAAGCA
GCTCTCTAAACAAGAAGGAATGAATCATGTATACGATTACCAAGCTTCTG
TTATGCGTTTCGGCACAAAGACCCCATTCCTATACCCGAATTTCGGAACT
GGTGAACTATCCCAAGCATTCTGTAGACTTTGCGCGGTTCATGGTGGCAC
TTATGTTCTGCGCCGTGGAGCCACTGGGCTTGTTCGGCCTAAGGGAGATC
AGATGGAAACCAACACCGAAGCTGCAGACTATCGCTTGGGAGTTATTACG
ACTGCTGGTGACATTGTGCGAACAAAATATGTATTTGTGCCTGGAGGTCT
CATGAAGCAAGAACCAGAAAGCCCAGTGGATGTTTGGCACGCTGTTGTAG
TGCTTGATGGGAGTATCTTGAAAGCTAATCAGCCAGAACGCGCTATGATC
ACAATTCCTCGAGGAACTGTAGGAAACTACACGTCTGCTGTTCGCGTCAG
GCAATTGGATAGCACCGTCATGGTCTGCCCCCAAGGAAAATACGTTTTGT
ACGCAGAAACCATTGAGGAGGGCGGCACAGAACAGGACCTGATCAGAGTT
CTTGAACGTTACGTCGTTATGAGTGCTACTGTGCTTGAGAATAAGCGAGA
GGAACGTGAAGATGGGGATCAGGAAGCTGAAGGTCAAAGCGAAACGGACT
CGAAGTCTGACGTGAAACCTAATTGTCTGTGGGGTATTTCATATGCACGA
CCATGCGTCAAAAGCGAAGCCGTGGCAGAAGACGTTATCCTTGTATCGGC
AAGTGAAAGAGAACATGACGCGGAGAACGCGGTACTTGAAGCTCAAAGAT
GCTTCAAGATAGTGCATCCTGATGGAGAATTTCTACCACAGAGGAAGGAC
GACGTTGGACAAGTTAGTAACGGGGTTGCGGAGCCTGAAAAAGCAAGCAG
TGACACTGAAGAACAATTTGGCATCCGAGAGACAAGATCTCAATGA
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protein sequence of Ggra7660.t1

>Ggra7660.t1 ID=Ggra7660.t1|Name=Ggra7660.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=582bp
MPRATAHQPLTDTDYDAVVIGTDLPQAILAAALSISGSRVLHLDANELYG
GRWATIQVKALEDAIQDVEQDARDEAASPSSEIQADSVIGNHFPDHEFHP
FLPMSQYHQFFPLGARRLQSARTTELYSSISSCLVDLVPRPIMSAGTMIE
LLVRTNVGHYVDFRALDALYVQFPGSNGLQRVPGSRADVFQNAFITMPEK
RLMMRYVTRCYETILARKERLEEDENFAQDDDMDDTSLQEDMETMRLTHK
LQTFLTHSILFSVGGKQLSKQEGMNHVYDYQASVMRFGTKTPFLYPNFGT
GELSQAFCRLCAVHGGTYVLRRGATGLVRPKGDQMETNTEAADYRLGVIT
TAGDIVRTKYVFVPGGLMKQEPESPVDVWHAVVVLDGSILKANQPERAMI
TIPRGTVGNYTSAVRVRQLDSTVMVCPQGKYVLYAETIEEGGTEQDLIRV
LERYVVMSATVLENKREEREDGDQEAEGQSETDSKSDVKPNCLWGISYAR
PCVKSEAVAEDVILVSASEREHDAENAVLEAQRCFKIVHPDGEFLPQRKD
DVGQVSNGVAEPEKASSDTEEQFGIRETRSQ*
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mRNA from alignment at tig00000206_pilon:126747..128492-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7660.t1 ID=Ggra7660.t1|Name=Ggra7660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1746bp|location=Sequence derived from alignment at tig00000206_pilon:126747..128492- (Gracilaria gracilis GNS1m male)
ATGCCGAGAGCTACGGCACATCAGCCTTTAACGGACACCGACTATGATGC
AGTTGTCATTGGCACCGATCTTCCCCAGGCAATTCTTGCAGCAGCTTTGT
CAATTTCTGGTTCTCGAGTTTTACATCTAGATGCGAATGAGCTCTATGGT
GGAAGGTGGGCTACAATCCAAGTCAAAGCATTGGAAGATGCTATCCAAGA
TGTCGAACAGGATGCGCGCGATGAAGCCGCGTCTCCCTCATCTGAGATAC
AAGCAGATTCTGTAATAGGTAACCATTTCCCCGACCATGAGTTCCACCCG
TTTCTTCCTATGTCCCAGTACCATCAGTTTTTTCCCCTTGGGGCGCGCCG
ACTGCAGAGTGCTCGTACTACAGAGCTGTATTCATCTATATCTTCATGTC
TGGTTGATCTTGTTCCACGTCCAATTATGTCGGCAGGTACCATGATCGAG
TTGCTGGTGCGCACTAATGTTGGCCATTACGTTGACTTTCGCGCACTGGA
CGCTCTGTATGTACAATTTCCGGGATCTAACGGTTTGCAACGCGTGCCTG
GAAGCCGCGCTGATGTGTTTCAGAACGCGTTTATAACAATGCCTGAGAAA
AGGCTGATGATGCGGTATGTGACAAGATGCTATGAGACTATCTTAGCAAG
GAAAGAACGGCTAGAGGAAGATGAGAACTTCGCCCAAGACGATGACATGG
ACGACACATCTCTTCAAGAAGACATGGAAACCATGCGGTTAACACATAAG
TTACAGACGTTCCTCACCCATTCTATCTTGTTTTCTGTCGGCGGGAAGCA
GCTCTCTAAACAAGAAGGAATGAATCATGTATACGATTACCAAGCTTCTG
TTATGCGTTTCGGCACAAAGACCCCATTCCTATACCCGAATTTCGGAACT
GGTGAACTATCCCAAGCATTCTGTAGACTTTGCGCGGTTCATGGTGGCAC
TTATGTTCTGCGCCGTGGAGCCACTGGGCTTGTTCGGCCTAAGGGAGATC
AGATGGAAACCAACACCGAAGCTGCAGACTATCGCTTGGGAGTTATTACG
ACTGCTGGTGACATTGTGCGAACAAAATATGTATTTGTGCCTGGAGGTCT
CATGAAGCAAGAACCAGAAAGCCCAGTGGATGTTTGGCACGCTGTTGTAG
TGCTTGATGGGAGTATCTTGAAAGCTAATCAGCCAGAACGCGCTATGATC
ACAATTCCTCGAGGAACTGTAGGAAACTACACGTCTGCTGTTCGCGTCAG
GCAATTGGATAGCACCGTCATGGTCTGCCCCCAAGGAAAATACGTTTTGT
ACGCAGAAACCATTGAGGAGGGCGGCACAGAACAGGACCTGATCAGAGTT
CTTGAACGTTACGTCGTTATGAGTGCTACTGTGCTTGAGAATAAGCGAGA
GGAACGTGAAGATGGGGATCAGGAAGCTGAAGGTCAAAGCGAAACGGACT
CGAAGTCTGACGTGAAACCTAATTGTCTGTGGGGTATTTCATATGCACGA
CCATGCGTCAAAAGCGAAGCCGTGGCAGAAGACGTTATCCTTGTATCGGC
AAGTGAAAGAGAACATGACGCGGAGAACGCGGTACTTGAAGCTCAAAGAT
GCTTCAAGATAGTGCATCCTGATGGAGAATTTCTACCACAGAGGAAGGAC
GACGTTGGACAAGTTAGTAACGGGGTTGCGGAGCCTGAAAAAGCAAGCAG
TGACACTGAAGAACAATTTGGCATCCGAGAGACAAGATCTCAATGA
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Coding sequence (CDS) from alignment at tig00000206_pilon:126747..128492-

>Ggra7660.t1 ID=Ggra7660.t1|Name=Ggra7660.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1746bp|location=Sequence derived from alignment at tig00000206_pilon:126747..128492- (Gracilaria gracilis GNS1m male)
ATGCCGAGAGCTACGGCACATCAGCCTTTAACGGACACCGACTATGATGC
AGTTGTCATTGGCACCGATCTTCCCCAGGCAATTCTTGCAGCAGCTTTGT
CAATTTCTGGTTCTCGAGTTTTACATCTAGATGCGAATGAGCTCTATGGT
GGAAGGTGGGCTACAATCCAAGTCAAAGCATTGGAAGATGCTATCCAAGA
TGTCGAACAGGATGCGCGCGATGAAGCCGCGTCTCCCTCATCTGAGATAC
AAGCAGATTCTGTAATAGGTAACCATTTCCCCGACCATGAGTTCCACCCG
TTTCTTCCTATGTCCCAGTACCATCAGTTTTTTCCCCTTGGGGCGCGCCG
ACTGCAGAGTGCTCGTACTACAGAGCTGTATTCATCTATATCTTCATGTC
TGGTTGATCTTGTTCCACGTCCAATTATGTCGGCAGGTACCATGATCGAG
TTGCTGGTGCGCACTAATGTTGGCCATTACGTTGACTTTCGCGCACTGGA
CGCTCTGTATGTACAATTTCCGGGATCTAACGGTTTGCAACGCGTGCCTG
GAAGCCGCGCTGATGTGTTTCAGAACGCGTTTATAACAATGCCTGAGAAA
AGGCTGATGATGCGGTATGTGACAAGATGCTATGAGACTATCTTAGCAAG
GAAAGAACGGCTAGAGGAAGATGAGAACTTCGCCCAAGACGATGACATGG
ACGACACATCTCTTCAAGAAGACATGGAAACCATGCGGTTAACACATAAG
TTACAGACGTTCCTCACCCATTCTATCTTGTTTTCTGTCGGCGGGAAGCA
GCTCTCTAAACAAGAAGGAATGAATCATGTATACGATTACCAAGCTTCTG
TTATGCGTTTCGGCACAAAGACCCCATTCCTATACCCGAATTTCGGAACT
GGTGAACTATCCCAAGCATTCTGTAGACTTTGCGCGGTTCATGGTGGCAC
TTATGTTCTGCGCCGTGGAGCCACTGGGCTTGTTCGGCCTAAGGGAGATC
AGATGGAAACCAACACCGAAGCTGCAGACTATCGCTTGGGAGTTATTACG
ACTGCTGGTGACATTGTGCGAACAAAATATGTATTTGTGCCTGGAGGTCT
CATGAAGCAAGAACCAGAAAGCCCAGTGGATGTTTGGCACGCTGTTGTAG
TGCTTGATGGGAGTATCTTGAAAGCTAATCAGCCAGAACGCGCTATGATC
ACAATTCCTCGAGGAACTGTAGGAAACTACACGTCTGCTGTTCGCGTCAG
GCAATTGGATAGCACCGTCATGGTCTGCCCCCAAGGAAAATACGTTTTGT
ACGCAGAAACCATTGAGGAGGGCGGCACAGAACAGGACCTGATCAGAGTT
CTTGAACGTTACGTCGTTATGAGTGCTACTGTGCTTGAGAATAAGCGAGA
GGAACGTGAAGATGGGGATCAGGAAGCTGAAGGTCAAAGCGAAACGGACT
CGAAGTCTGACGTGAAACCTAATTGTCTGTGGGGTATTTCATATGCACGA
CCATGCGTCAAAAGCGAAGCCGTGGCAGAAGACGTTATCCTTGTATCGGC
AAGTGAAAGAGAACATGACGCGGAGAACGCGGTACTTGAAGCTCAAAGAT
GCTTCAAGATAGTGCATCCTGATGGAGAATTTCTACCACAGAGGAAGGAC
GACGTTGGACAAGTTAGTAACGGGGTTGCGGAGCCTGAAAAAGCAAGCAG
TGACACTGAAGAACAATTTGGCATCCGAGAGACAAGATCTCAATGA
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