Ggra7615.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7615.t1
Unique NameGgra7615.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:317712..322691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog521674.Plim_3648
PFAMsDUF1080,LRR_5,Pkinase
Max annot lvl203682|Planctomycetes
KEGG koko:K12132
Evalue7.08e-08
EggNOG OGsCOG0515@1|root,COG0515@2|Bacteria,2IYF2@203682|Planctomycetes
EC2.7.11.1
DescriptionCOG0515 Serine threonine protein
COG categoryKLT
BRITEko00000,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7615Ggra7615Gracilaria gracilis GNS1m malegenetig00000866_pilon 317712..322691 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7615.t1Ggra7615.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 317712..322691 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7615.t1.stop1Ggra7615.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 317712..317714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7615.t1.CDS1Ggra7615.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 317712..317721 -
Ggra7615.t1.CDS2Ggra7615.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000866_pilon 317834..317878 -
Ggra7615.t1.CDS3Ggra7615.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000866_pilon 321265..322691 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7615.t1.exon1Ggra7615.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 317712..317721 -
Ggra7615.t1.exon2Ggra7615.t1.exon2Gracilaria gracilis GNS1m maleexontig00000866_pilon 317834..317878 -
Ggra7615.t1.exon3Ggra7615.t1.exon3Gracilaria gracilis GNS1m maleexontig00000866_pilon 321265..322691 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7615.t1.intron1Ggra7615.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000866_pilon 317722..317833 -
Ggra7615.t1.intron2Ggra7615.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000866_pilon 317879..321264 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7615.t1.start1Ggra7615.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 322689..322691 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7615.t1 ID=Ggra7615.t1|Name=Ggra7615.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MICNYVTEERKGKPQEVSNWSHAEKVGKGEDRKGIGFLLAWCNTCFGGIK
HKRSLQCEDSTNAVETEICSLDWWDVDDDGYIHDNVCQALRRAGYYKQLM
WLLSKPQWIVKRLQKNGIYEVEQDLENGKAVAKQRHPENKKIARHMEVVG
KAARMGCSYVSNNKREAWFQIHGRLLWYATQCEKTRKFVKEIEEVAPRPW
AKASIGLLQHAGGAASDILQSSGTVVSVFQDRETMLYFWKNDALNIGVSR
YFFTSGLVQTQAFKPDEVEQHNLSEVESCAFSPDGKKLLTGHRNGKMCLW
ETETGRIIRCINGHSRRIASVAISGDGSKAVSGSWDTTVRLWDMDSLAAV
GESLVGHTKEVQSVAISHNGRWVVSGSWDKTVHLWNADRGETEGNPFVGH
AKEVECVATSRDGRVLVSCSRDTTVRVWDADSGEAVGQPLQHGHIAACVA
ISQDGRRVVSGSYDKTIGVWDVDNSGKASVEEKVEQLWWYSYC*
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spliced messenger RNA

>Ggra7615.t1 ID=Ggra7615.t1|Name=Ggra7615.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000866_pilon:317712..322691- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATGTAATTATGTGACGGAGGAGCGAAAAGGTAAACCTCAAGAAGT
GAGCAACTGGTCCCACGCAGAGAAGGTTGGAAAGGGAGAAGACAGAAAGG
GGATAGGCTTTCTTCTCGCATGGTGCAATACTTGTTTTGGAGGTATCAAG
CATAAACGTTCTCTACAATGTGAGGATAGTACGAATGCAGTTGAGACTGA
AATATGTTCGCTTGATTGGTGGGATGTTGACGATGACGGTTATATTCACG
ACAACGTTTGCCAGGCACTGCGAAGAGCTGGGTATTATAAGCAACTTATG
TGGTTATTGTCAAAACCCCAATGGATAGTGAAACGACTGCAGAAGAATGG
AATCTACGAAGTCGAACAAGACCTAGAAAACGGAAAGGCAGTTGCAAAGC
AACGGCATCCTGAAAACAAAAAGATCGCCAGACATATGGAAGTTGTTGGG
AAAGCGGCGCGCATGGGCTGCAGTTATGTGAGCAACAACAAAAGGGAAGC
TTGGTTCCAGATACACGGACGGTTGCTCTGGTACGCAACGCAATGTGAGA
AAACACGCAAATTTGTGAAGGAGATTGAAGAAGTTGCGCCAAGACCATGG
GCAAAAGCATCGATTGGGCTGCTACAACATGCCGGAGGAGCTGCTTCAGA
TATTCTTCAAAGTTCTGGAACAGTGGTTTCTGTGTTTCAGGATCGGGAAA
CGATGCTCTACTTTTGGAAGAATGACGCCTTGAACATAGGAGTGTCTCGC
TATTTCTTTACTAGTGGCCTCGTTCAGACTCAAGCTTTCAAACCCGACGA
AGTCGAGCAGCACAACCTTTCTGAGGTGGAGAGTTGTGCTTTCTCGCCTG
ATGGGAAGAAACTTTTGACGGGGCACAGAAATGGGAAGATGTGTCTCTGG
GAGACAGAAACAGGGCGCATAATACGATGTATCAATGGCCACAGCAGACG
AATTGCAAGTGTAGCTATAAGCGGCGACGGGAGCAAAGCGGTATCTGGTT
CATGGGACACGACGGTTCGGTTGTGGGATATGGACAGCTTAGCGGCTGTG
GGGGAGTCCCTCGTTGGTCACACGAAAGAGGTGCAGAGCGTTGCGATAAG
CCACAACGGGAGATGGGTTGTTTCGGGTTCTTGGGATAAGACTGTTCACC
TTTGGAATGCAGACAGGGGAGAGACTGAAGGGAATCCGTTCGTCGGCCAT
GCGAAAGAGGTGGAGTGTGTTGCGACAAGCAGAGACGGGAGGGTACTGGT
TTCATGTTCTAGGGACACGACGGTTCGGGTGTGGGATGCAGACAGTGGGG
AAGCCGTTGGGCAACCCCTCCAACACGGACATATTGCTGCATGTGTTGCG
ATTAGTCAGGACGGGAGACGCGTGGTGTCTGGTTCTTATGACAAGACAAT
TGGGGTTTGGGATGTGGATAATAGCGGGAAGGCTAGTGTAGAGGAAAAGG
TTGAACAACTTTGGTGGTATTCGTACTGCTAA
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protein sequence of Ggra7615.t1

>Ggra7615.t1 ID=Ggra7615.t1|Name=Ggra7615.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MICNYVTEERKGKPQEVSNWSHAEKVGKGEDRKGIGFLLAWCNTCFGGIK
HKRSLQCEDSTNAVETEICSLDWWDVDDDGYIHDNVCQALRRAGYYKQLM
WLLSKPQWIVKRLQKNGIYEVEQDLENGKAVAKQRHPENKKIARHMEVVG
KAARMGCSYVSNNKREAWFQIHGRLLWYATQCEKTRKFVKEIEEVAPRPW
AKASIGLLQHAGGAASDILQSSGTVVSVFQDRETMLYFWKNDALNIGVSR
YFFTSGLVQTQAFKPDEVEQHNLSEVESCAFSPDGKKLLTGHRNGKMCLW
ETETGRIIRCINGHSRRIASVAISGDGSKAVSGSWDTTVRLWDMDSLAAV
GESLVGHTKEVQSVAISHNGRWVVSGSWDKTVHLWNADRGETEGNPFVGH
AKEVECVATSRDGRVLVSCSRDTTVRVWDADSGEAVGQPLQHGHIAACVA
ISQDGRRVVSGSYDKTIGVWDVDNSGKASVEEKVEQLWWYSYC*
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mRNA from alignment at tig00000866_pilon:317712..322691-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7615.t1 ID=Ggra7615.t1|Name=Ggra7615.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4980bp|location=Sequence derived from alignment at tig00000866_pilon:317712..322691- (Gracilaria gracilis GNS1m male)
ATGATATGTAATTATGTGACGGAGGAGCGAAAAGGTAAACCTCAAGAAGT GAGCAACTGGTCCCACGCAGAGAAGGTTGGAAAGGGAGAAGACAGAAAGG GGATAGGCTTTCTTCTCGCATGGTGCAATACTTGTTTTGGAGGTATCAAG CATAAACGTTCTCTACAATGTGAGGATAGTACGAATGCAGTTGAGACTGA AATATGTTCGCTTGATTGGTGGGATGTTGACGATGACGGTTATATTCACG ACAACGTTTGCCAGGCACTGCGAAGAGCTGGGTATTATAAGCAACTTATG TGGTTATTGTCAAAACCCCAATGGATAGTGAAACGACTGCAGAAGAATGG AATCTACGAAGTCGAACAAGACCTAGAAAACGGAAAGGCAGTTGCAAAGC AACGGCATCCTGAAAACAAAAAGATCGCCAGACATATGGAAGTTGTTGGG AAAGCGGCGCGCATGGGCTGCAGTTATGTGAGCAACAACAAAAGGGAAGC TTGGTTCCAGATACACGGACGGTTGCTCTGGTACGCAACGCAATGTGAGA AAACACGCAAATTTGTGAAGGAGATTGAAGAAGTTGCGCCAAGACCATGG GCAAAAGCATCGATTGGGCTGCTACAACATGCCGGAGGAGCTGCTTCAGA TATTCTTCAAAGTTCTGGAACAGTGGTTTCTGTGTTTCAGGATCGGGAAA CGATGCTCTACTTTTGGAAGAATGACGCCTTGAACATAGGAGTGTCTCGC TATTTCTTTACTAGTGGCCTCGTTCAGACTCAAGCTTTCAAACCCGACGA AGTCGAGCAGCACAACCTTTCTGAGGTGGAGAGTTGTGCTTTCTCGCCTG ATGGGAAGAAACTTTTGACGGGGCACAGAAATGGGAAGATGTGTCTCTGG GAGACAGAAACAGGGCGCATAATACGATGTATCAATGGCCACAGCAGACG AATTGCAAGTGTAGCTATAAGCGGCGACGGGAGCAAAGCGGTATCTGGTT CATGGGACACGACGGTTCGGTTGTGGGATATGGACAGCTTAGCGGCTGTG GGGGAGTCCCTCGTTGGTCACACGAAAGAGGTGCAGAGCGTTGCGATAAG CCACAACGGGAGATGGGTTGTTTCGGGTTCTTGGGATAAGACTGTTCACC TTTGGAATGCAGACAGGGGAGAGACTGAAGGGAATCCGTTCGTCGGCCAT GCGAAAGAGGTGGAGTGTGTTGCGACAAGCAGAGACGGGAGGGTACTGGT TTCATGTTCTAGGGACACGACGGTTCGGGTGTGGGATGCAGACAGTGGGG AAGCCGTTGGGCAACCCCTCCAACACGGACATATTGCTGCATGTGTTGCG ATTAGTCAGGACGGGAGACGCGTGGTGTCTGGTTCTTATGACAAGACAAT TGGGGTTTGGGATGTGGATAATAGCGGGTCTGTAGGGCGGCGGTCCCTCG TCGGTCACACAGAAGGGGTAATGCGTGTTTCGATCAACGATTGCGGAACT CGAGTGGTGTCCGGAGACCGGGAGAAGATGATTCGAGTGTGGAATGTGGA CGATGGAGACGTGGTTGAACAGTCGCCTGTCGGGCACACAGGTTTGGTTA AGTGTGTTGCGGTGTGTCGCGACGGAAGTAAAGTTGTTTCTGGATCTGTG GATAGAACGGTTAGGGTGTGGGACTGCGATAGCGGGGAGGCGGTTGGTAC AACGATGGACCACGGAAGTTATGTGCATCGCCTGGCGGTGAATCACGACG GGTCACAGGTTGTATCATACGAGTACAGTGGCCTTGGAAAACTATGGGAC GTGAACAACGGACGACGCGTGACGACCTCCGAAGAAGAAGGCTGGCAGTC TACCCTCAACGATCTTGCTCTTTCGGAATCGAATGACTGGAGCCCAACGT CAAACCAGGTGATCCATCGGGGCCCAGATGAACGTGACGTCGTTCTCGCA ACTTGCGACTGTCCCGTTGAGCGGATTGGCGAATGTTGGTTTTCTCCCTA CTTCGCACATTGTACAGTTGTAAGAGATACGACCACTTCGGTTTGATAAC TACTTTACAATCGTTCCTCTGCCTCGGGTTTCCATTCAATTGTTCCCAAG TCGGACATGACAGCGAGACCATTCCTGTGACAGTATAGAAGAAGGAAGTC TTGATAGAACGTGATTACCAACAGCACTGTCCTTTAGCCCTTAAATACAT GAGTGATAAATCCACGCTCAGGAAGAGAAGGAAACTTGCAGATGATAGTG GATCACCTTGATACAATCAATGATGTTGGCCCCAAAATAGTCCTCTCTCT CTCTCTCTCTTATGAGTGCACTAACTTAATTATGCCTTGGTGTAGAACGT TTCTGTTCAAAGAAACGTTCTCTCACAAAGAAAGCCAACACTCTAGCGGG CCATTTTCTGACTATACTAGCAACGGATTGTCCTTGGCGTTCTCGACGAG AAGCTAGACATAAACGCCTGGAAAACTTTCTCTTGGGGCATCGCAGCAGG TAATGGTCCACATCGTTCAGGACACCAGGTCTACAATTACATACCAACTT CTTTCCACGTAAATGAGATCCAAGAGGATGTAAGCTTGGCGTACATATGT CCCACGTAGATCTGTGCCAAAGCGGTTTACCTCTCTCTCTCTCCCTGGTA CGGGCGCGGTAGTCTAATTCCTACTTACCGCAGTGCGCTTCAGTTGAAAG AAACGCTCTCTCACTAGAAAACCCAGCACTCTTTCTTGCCATTTTCTAAT TATCTGTGCAACAGTCATTCGTCGACGATCTTGACGAGGTGGTAGAGATA TCATTCTGGAAGCGGTCCTCAACGGACATCGTAGAACGTAGTGCTCGACA TCATTGAGGACTCCTGGTCGACATTTGCAAACTGCTCGCTTCCCTGTAAT GTGAGTTGCTAATGGATGCAAGTAGGATGTATGTCCAACGAACAGCTGGG CCAAGGTAACTTCTGCCTCTCTTTGAGAAAGAATGTTCTCAAAGGACTTC GGTAATTCTGAAATCAGCGGGATGGAATTGGACTTCCCTAACACTCTCCT CCGTACCTCTGCAAGATCGACCGGGACCAATATCTGTTCTTGTAACGGAG TGTTTAATGCTTGTTTTGCCAAGTTATCTACCTGCTTATTCCTCGGAATT CCACCAGTGACTTGGTACCCATAAAACGTGTACCGGGCATAAATTCCCCA GTTCTGATAGCACTTTTGAAGTCTGCTGTACAGAGTACGAGTGTTGCCGA ACCGGAGATTGTAGGTTTTCCATGACACTTGTGGAATCAGTGTCTATCAT GACAATCCCTCTCCAACCCACTCTTACCTTTTCCAGTACACGCATAGTCG CCGCCTTTATCGCTGCTACTTCCGCTAGAAATGGAGACACTCCGATTCCT GCTGGCACCAATTTGGTCTCGGCCTGTGAAAGAGAGCGGCACCACATCGC ATACGCACCACCGCCGACTGTAGAAACCTCAAGCACCTTCATGTTTAGCT TGTCGCCGTCTTCATCTATAATTTCTCTTCCCCCCGGTAATATTCCATAT GCTAACACGAAATGATCATCATGCTTAAAAACCATATCCAGTCCTCGTCC ATGCTTCTTTTGAAAGTTCTTGACCGTTTCAAAGTTCCTGGTAAACTCCT CACTATATTCAATCGAACCAGCATACTAGCTTTCATCCCACTCGACAGCT GCTAGTAGTGGCTTAGAAGTATCTATCATTTCCGGACTTCCAACAGATTC ATCGGTCCAAATCTCACAATGTGCCACCGGTAACGAATTTAAAGTCTGCA TAGCTCCAAACAGTTGGTTGTCAACAGTATCCTCCTTAGAACAGTTGCTG TAATGGTAATGCAGTACTCCCGTAGTTTGCAAACCAGGTTTTTCGGGTAG TGGAGCCCTTCGCAACTGTAGCAGTCCTACGTCTGCAAATCGACTCTGAA GCTTTCTGAACAAAATAGTCTTGGTGCGCATTGGTCGATTGCAACGCAAC AAATGTTGCTGCTGTATACGAGAGATAGCGCACAATCCTACGGCATTGAT ACTGAGTTGAAGACAGGAGCGATAACTGGAAGAAGCAGGTGTATGCGAGT ATCGTTGCGGTGTATCGGACGCTGCAAGACAATGTATATCACGGCCGTGT AGGACTTTGGCTCTTACAAACCAAAGTTGGGGGAGTTAGGAGACAAGTGA AGAACACGACAAGAGCATAAATACCGCGCTTGGTCGGTGGTGCTCTCTAG TCGGGAACGGCATCGAGGCTTTCGTCAATACCAAAGTCAGGAGGGTACCA GATTTTTTCATTGATCTCACGAATGAAACTTTTTGTTCTCTCACATTCTA AGCGCGATAGGAGATAATCTTGTTCTCGACGCCATTTCATATACCAATCC GGAGTAGATATGGAATCGCAACCTTGGAACAACGTCTCTTTTACCATATT GAAGTGTTTGAGCAGGTCTTGATTGTCGTGAACAGTTTCACAAACTACCT GCTTTACATGTTCAAGATCTTGATCCACCAGGTACATTCCGCCATCCTGA TATCTCGCCACTATCCATTGGGGTGTTGATAGCAACCACATTGGTTGTTC ATCGTAGGCTGCACTTCGGAGAACCCAACATATGTTATCGTGGATAAACC CGTCATCTTCTACATCCCACCATGCATATGACCCATTCTTGGTCTCTGCT ACCTGCTCAGTACTGTCATTATCTACATCATATGTCTCCTTCTTTCTGTT ATGCAGACTTCATTTGTACCAGCGACCAACCTGAATTTCCTCCACATCTG TGTTGCCATACAGGAAGGCTAGTGTAGAGGAAAAGGTTGAACAACTTTGG TGGTATTCGTAAGTTGCATCCCCTTGCACAATATCGACCCCGTAACCACA AAGGTTATTTTCTTGCCACCCAAACGAGCTGACAGCACTTTTGGAATCTT TATGGCGGACAACCGACTAGGTACTGCTAA
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Coding sequence (CDS) from alignment at tig00000866_pilon:317712..322691-

>Ggra7615.t1 ID=Ggra7615.t1|Name=Ggra7615.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000866_pilon:317712..322691- (Gracilaria gracilis GNS1m male)
ATGATATGTAATTATGTGACGGAGGAGCGAAAAGGTAAACCTCAAGAAGT
GAGCAACTGGTCCCACGCAGAGAAGGTTGGAAAGGGAGAAGACAGAAAGG
GGATAGGCTTTCTTCTCGCATGGTGCAATACTTGTTTTGGAGGTATCAAG
CATAAACGTTCTCTACAATGTGAGGATAGTACGAATGCAGTTGAGACTGA
AATATGTTCGCTTGATTGGTGGGATGTTGACGATGACGGTTATATTCACG
ACAACGTTTGCCAGGCACTGCGAAGAGCTGGGTATTATAAGCAACTTATG
TGGTTATTGTCAAAACCCCAATGGATAGTGAAACGACTGCAGAAGAATGG
AATCTACGAAGTCGAACAAGACCTAGAAAACGGAAAGGCAGTTGCAAAGC
AACGGCATCCTGAAAACAAAAAGATCGCCAGACATATGGAAGTTGTTGGG
AAAGCGGCGCGCATGGGCTGCAGTTATGTGAGCAACAACAAAAGGGAAGC
TTGGTTCCAGATACACGGACGGTTGCTCTGGTACGCAACGCAATGTGAGA
AAACACGCAAATTTGTGAAGGAGATTGAAGAAGTTGCGCCAAGACCATGG
GCAAAAGCATCGATTGGGCTGCTACAACATGCCGGAGGAGCTGCTTCAGA
TATTCTTCAAAGTTCTGGAACAGTGGTTTCTGTGTTTCAGGATCGGGAAA
CGATGCTCTACTTTTGGAAGAATGACGCCTTGAACATAGGAGTGTCTCGC
TATTTCTTTACTAGTGGCCTCGTTCAGACTCAAGCTTTCAAACCCGACGA
AGTCGAGCAGCACAACCTTTCTGAGGTGGAGAGTTGTGCTTTCTCGCCTG
ATGGGAAGAAACTTTTGACGGGGCACAGAAATGGGAAGATGTGTCTCTGG
GAGACAGAAACAGGGCGCATAATACGATGTATCAATGGCCACAGCAGACG
AATTGCAAGTGTAGCTATAAGCGGCGACGGGAGCAAAGCGGTATCTGGTT
CATGGGACACGACGGTTCGGTTGTGGGATATGGACAGCTTAGCGGCTGTG
GGGGAGTCCCTCGTTGGTCACACGAAAGAGGTGCAGAGCGTTGCGATAAG
CCACAACGGGAGATGGGTTGTTTCGGGTTCTTGGGATAAGACTGTTCACC
TTTGGAATGCAGACAGGGGAGAGACTGAAGGGAATCCGTTCGTCGGCCAT
GCGAAAGAGGTGGAGTGTGTTGCGACAAGCAGAGACGGGAGGGTACTGGT
TTCATGTTCTAGGGACACGACGGTTCGGGTGTGGGATGCAGACAGTGGGG
AAGCCGTTGGGCAACCCCTCCAACACGGACATATTGCTGCATGTGTTGCG
ATTAGTCAGGACGGGAGACGCGTGGTGTCTGGTTCTTATGACAAGACAAT
TGGGGTTTGGGATGTGGATAATAGCGGGAAGGCTAGTGTAGAGGAAAAGG
TTGAACAACTTTGGTGGTATTCGTACTGCTAA
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