Ggra7614.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7614.t1
Unique NameGgra7614.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:316614..317400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7614Ggra7614Gracilaria gracilis GNS1m malegenetig00000866_pilon 316614..317400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7614.t1Ggra7614.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 316614..317400 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7614.t1.stop1Ggra7614.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 316614..316616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7614.t1.CDS1Ggra7614.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 316614..316849 -
Ggra7614.t1.CDS2Ggra7614.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000866_pilon 316950..317400 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7614.t1.exon1Ggra7614.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 316614..316849 -
Ggra7614.t1.exon2Ggra7614.t1.exon2Gracilaria gracilis GNS1m maleexontig00000866_pilon 316950..317400 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7614.t1.intron1Ggra7614.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000866_pilon 316850..316949 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7614.t1.start1Ggra7614.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 317398..317400 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7614.t1 ID=Ggra7614.t1|Name=Ggra7614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=229bp
MQTNGMDVMIDPFDRFFFVLLTMPISSVSLMKYLFEKQRERIPNLAVYAK
AGPYRKGLICTRLIEAGGCKPLVLDSVQGVNIRPHPRQDSEARNYVNVSC
GTAQNEGSTNENITRLPRGHQGSKRGDRGTRAEELETRGHGVNHEDTPQQ
VVIPEAAEVVRQKDAAKVTMHAEAAEVAAYIEAAEVAAQAEVAGEAATAA
AEVEAKVETEVAAAVAAELAELAVEVVA*
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spliced messenger RNA

>Ggra7614.t1 ID=Ggra7614.t1|Name=Ggra7614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000866_pilon:316614..317400- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACAAACGGCATGGACGTAATGATCGATCCCTTCGATCGCTTTTT
CTTCGTCTTGTTGACGATGCCGATCTCATCGGTGTCACTGATGAAGTACC
TCTTTGAAAAGCAGAGAGAACGGATTCCGAATTTGGCTGTCTATGCGAAA
GCTGGGCCGTATCGGAAGGGATTGATCTGCACTCGCCTAATTGAAGCAGG
AGGTTGTAAGCCGCTGGTTCTGGACTCTGTGCAAGGTGTGAATATACGCC
CGCATCCGAGGCAGGACTCTGAAGCACGTAATTATGTGAACGTGTCTTGC
GGTACAGCCCAAAACGAAGGCTCTACCAACGAAAACATTACAAGACTTCC
AAGAGGCCACCAAGGAAGTAAAAGGGGTGACCGGGGAACGAGAGCGGAGG
AACTGGAAACTCGTGGTCATGGAGTGAACCACGAGGACACACCGCAGCAA
GTGGTCATACCAGAGGCGGCCGAGGTGGTCAGGCAAAAGGACGCGGCCAA
GGTGACCATGCACGCGGAGGCGGCAGAGGTAGCCGCGTACATAGAGGCGG
CCGAGGTGGCCGCACAAGCAGAGGTGGCTGGAGAGGCAGCCACAGCGGCG
GCCGAGGTGGAGGCCAAGGTGGAAACAGAGGTGGCAGCCGCGGTGGCGGC
CGAGTTGGCCGAGTTGGCCGTGGAGGTGGTGGCCTAG
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protein sequence of Ggra7614.t1

>Ggra7614.t1 ID=Ggra7614.t1|Name=Ggra7614.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=229bp
MQTNGMDVMIDPFDRFFFVLLTMPISSVSLMKYLFEKQRERIPNLAVYAK
AGPYRKGLICTRLIEAGGCKPLVLDSVQGVNIRPHPRQDSEARNYVNVSC
GTAQNEGSTNENITRLPRGHQGSKRGDRGTRAEELETRGHGVNHEDTPQQ
VVIPEAAEVVRQKDAAKVTMHAEAAEVAAYIEAAEVAAQAEVAGEAATAA
AEVEAKVETEVAAAVAAELAELAVEVVA*
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mRNA from alignment at tig00000866_pilon:316614..317400-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7614.t1 ID=Ggra7614.t1|Name=Ggra7614.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=787bp|location=Sequence derived from alignment at tig00000866_pilon:316614..317400- (Gracilaria gracilis GNS1m male)
ATGCAAACAAACGGCATGGACGTAATGATCGATCCCTTCGATCGCTTTTT
CTTCGTCTTGTTGACGATGCCGATCTCATCGGTGTCACTGATGAAGTACC
TCTTTGAAAAGCAGAGAGAACGGATTCCGAATTTGGCTGTCTATGCGAAA
GCTGGGCCGTATCGGAAGGGATTGATCTGCACTCGCCTAATTGAAGCAGG
AGGTTGTAAGCCGCTGGTTCTGGACTCTGTGCAAGGTGTGAATATACGCC
CGCATCCGAGGCAGGACTCTGAAGCACGTAATTATGTGAACGTGTCTTGC
GGTACAGCCCAAAACGAAGGCTCTACCAACGAAAACATTACAAGACTTCC
AAGAGGCCACCAAGGAAGTAAAAGGGGTGACCGGGGAACGAGAGCGGAGG
AACTGGAAACTCGTGGTCATGGAGTGAACCACGAGGACACACCGCAGCAA
GGTGCGCGTACTAACTCTGAGAATGTGCGACGCAGAGAGCATGGGGATAG
GGCAGGTGGGCCTCTAAGCCAAGAAGGTCTAACGCCTCAGGTGAGCCATA
GTGGTCATACCAGAGGCGGCCGAGGTGGTCAGGCAAAAGGACGCGGCCAA
GGTGACCATGCACGCGGAGGCGGCAGAGGTAGCCGCGTACATAGAGGCGG
CCGAGGTGGCCGCACAAGCAGAGGTGGCTGGAGAGGCAGCCACAGCGGCG
GCCGAGGTGGAGGCCAAGGTGGAAACAGAGGTGGCAGCCGCGGTGGCGGC
CGAGTTGGCCGAGTTGGCCGTGGAGGTGGTGGCCTAG
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Coding sequence (CDS) from alignment at tig00000866_pilon:316614..317400-

>Ggra7614.t1 ID=Ggra7614.t1|Name=Ggra7614.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000866_pilon:316614..317400- (Gracilaria gracilis GNS1m male)
ATGCAAACAAACGGCATGGACGTAATGATCGATCCCTTCGATCGCTTTTT
CTTCGTCTTGTTGACGATGCCGATCTCATCGGTGTCACTGATGAAGTACC
TCTTTGAAAAGCAGAGAGAACGGATTCCGAATTTGGCTGTCTATGCGAAA
GCTGGGCCGTATCGGAAGGGATTGATCTGCACTCGCCTAATTGAAGCAGG
AGGTTGTAAGCCGCTGGTTCTGGACTCTGTGCAAGGTGTGAATATACGCC
CGCATCCGAGGCAGGACTCTGAAGCACGTAATTATGTGAACGTGTCTTGC
GGTACAGCCCAAAACGAAGGCTCTACCAACGAAAACATTACAAGACTTCC
AAGAGGCCACCAAGGAAGTAAAAGGGGTGACCGGGGAACGAGAGCGGAGG
AACTGGAAACTCGTGGTCATGGAGTGAACCACGAGGACACACCGCAGCAA
GTGGTCATACCAGAGGCGGCCGAGGTGGTCAGGCAAAAGGACGCGGCCAA
GGTGACCATGCACGCGGAGGCGGCAGAGGTAGCCGCGTACATAGAGGCGG
CCGAGGTGGCCGCACAAGCAGAGGTGGCTGGAGAGGCAGCCACAGCGGCG
GCCGAGGTGGAGGCCAAGGTGGAAACAGAGGTGGCAGCCGCGGTGGCGGC
CGAGTTGGCCGAGTTGGCCGTGGAGGTGGTGGCCTAG
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