Ggra7598.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7598.t1
Unique NameGgra7598.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:270706..272223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7598Ggra7598Gracilaria gracilis GNS1m malegenetig00000866_pilon 270706..272403 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7598.t1.stop1Ggra7598.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 270706..270708 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7598.t1.CDS1Ggra7598.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 270706..272223 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7598.t1.exon1Ggra7598.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 270706..272223 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7598.t1.start1Ggra7598.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 272221..272223 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7598.t1Ggra7598.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 270706..272223 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7598.t1 ID=Ggra7598.t1|Name=Ggra7598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MVHREGRIRWKGAKRLFSVHKLTERCVPKVRRATSLLGNDGREGEDSKYG
FPAKSEEIMIESSLARTAQDRNVLYSDVTPSIGRPDGEESNEVQITSVLA
MGQDRPVQAPSTCFPVPYEAYHESSGSSIQECSSLCKFGCQYGDKCNMDL
RRLAYSETGLNNVPTSPNHEVPVVSGGESISEARCTATPSVGSMRNEVDS
VPTKAPTTAEIHGELECLTPGNSTASSADESSHEDSPLSFVSPTRMEAER
EGFPPCNFPQVKQSLSGDDANSQRGNEEAQDQNSPVIGLRAFSGDCLSCE
TFENVSPLTDEGEKRGKSPLISSDTPAEFRGDSSKVTKYVLLDATEMASG
GLFASQLGEAKDICAEDVDIEAKPAKVTCETLSVKDAENLSCPHLPQPIY
KLPDGTPGVDAMPALERSLVVSNGKEVSSGILHLRRPGSNSRILQYSPSD
RAYRLQRRMERFHHYFEEFLETDDMVFETTLRKSRVANRVRRFFEDGGSP
TEAKN*
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spliced messenger RNA

>Ggra7598.t1 ID=Ggra7598.t1|Name=Ggra7598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000866_pilon:270706..272223- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCATCGTGAGGGACGTATCAGATGGAAGGGAGCAAAGAGGTTGTT
CAGCGTCCACAAGCTGACCGAAAGATGTGTGCCGAAGGTTCGAAGAGCTA
CATCCCTGCTGGGAAATGATGGTCGTGAAGGGGAGGACTCGAAATACGGG
TTCCCGGCCAAATCCGAGGAAATCATGATCGAATCTTCCCTGGCAAGGAC
CGCTCAAGACAGAAACGTTCTCTACAGCGATGTAACGCCATCCATCGGGC
GCCCTGATGGCGAAGAAAGCAACGAAGTTCAGATAACTTCTGTGCTGGCA
ATGGGTCAGGACCGGCCAGTTCAAGCACCAAGCACATGCTTCCCAGTGCC
ATACGAAGCGTACCACGAGTCTAGTGGTTCATCCATCCAGGAATGTAGCA
GCCTCTGTAAGTTTGGATGCCAATATGGGGATAAGTGTAACATGGATTTA
CGGCGCCTTGCATATTCAGAGACTGGGCTGAATAATGTCCCAACCAGCCC
AAACCACGAAGTACCGGTTGTGAGTGGTGGGGAAAGCATATCGGAAGCAA
GGTGTACTGCGACCCCTAGCGTTGGCAGCATGCGTAATGAGGTTGATAGT
GTACCGACCAAAGCACCCACAACAGCTGAAATTCATGGTGAACTGGAATG
TCTCACCCCTGGAAACTCGACGGCTTCTTCAGCTGATGAATCCTCACACG
AGGACTCTCCATTGTCCTTCGTCTCACCCACAAGAATGGAAGCAGAGCGG
GAAGGTTTCCCACCGTGTAACTTCCCACAAGTCAAGCAAAGTCTTTCAGG
AGATGATGCAAACAGCCAGAGGGGAAACGAAGAAGCCCAAGATCAAAACT
CCCCTGTAATCGGTCTGAGAGCTTTTTCCGGCGATTGTCTTAGCTGCGAA
ACCTTCGAAAATGTTTCTCCCCTGACAGACGAAGGGGAGAAACGCGGAAA
ATCGCCATTGATATCCAGTGATACTCCCGCAGAATTTAGAGGAGACAGCT
CAAAGGTGACGAAATATGTCCTACTTGACGCCACCGAAATGGCTTCTGGA
GGTTTATTTGCGTCACAACTTGGGGAAGCAAAGGACATATGTGCCGAAGA
CGTCGACATTGAAGCAAAGCCTGCTAAGGTTACTTGTGAAACGTTATCGG
TGAAGGACGCGGAGAACTTAAGCTGCCCCCACCTGCCCCAACCCATATAC
AAGCTACCTGACGGCACCCCGGGTGTTGATGCAATGCCGGCTTTGGAGAG
ATCATTGGTTGTTAGTAATGGAAAAGAAGTTAGTTCCGGAATTCTTCATC
TTCGGCGGCCCGGAAGTAACTCTCGAATCCTTCAGTACTCCCCTTCTGAT
CGAGCTTATCGGCTGCAGCGTAGGATGGAGCGCTTTCATCACTACTTCGA
AGAATTCTTAGAAACGGATGACATGGTATTTGAGACAACGCTTCGAAAAT
CAAGAGTGGCGAACCGTGTCCGTCGTTTCTTTGAAGATGGAGGGTCTCCA
ACGGAGGCCAAGAACTGA
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protein sequence of Ggra7598.t1

>Ggra7598.t1 ID=Ggra7598.t1|Name=Ggra7598.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MVHREGRIRWKGAKRLFSVHKLTERCVPKVRRATSLLGNDGREGEDSKYG
FPAKSEEIMIESSLARTAQDRNVLYSDVTPSIGRPDGEESNEVQITSVLA
MGQDRPVQAPSTCFPVPYEAYHESSGSSIQECSSLCKFGCQYGDKCNMDL
RRLAYSETGLNNVPTSPNHEVPVVSGGESISEARCTATPSVGSMRNEVDS
VPTKAPTTAEIHGELECLTPGNSTASSADESSHEDSPLSFVSPTRMEAER
EGFPPCNFPQVKQSLSGDDANSQRGNEEAQDQNSPVIGLRAFSGDCLSCE
TFENVSPLTDEGEKRGKSPLISSDTPAEFRGDSSKVTKYVLLDATEMASG
GLFASQLGEAKDICAEDVDIEAKPAKVTCETLSVKDAENLSCPHLPQPIY
KLPDGTPGVDAMPALERSLVVSNGKEVSSGILHLRRPGSNSRILQYSPSD
RAYRLQRRMERFHHYFEEFLETDDMVFETTLRKSRVANRVRRFFEDGGSP
TEAKN*
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mRNA from alignment at tig00000866_pilon:270706..272223-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7598.t1 ID=Ggra7598.t1|Name=Ggra7598.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000866_pilon:270706..272223- (Gracilaria gracilis GNS1m male)
ATGGTCCATCGTGAGGGACGTATCAGATGGAAGGGAGCAAAGAGGTTGTT
CAGCGTCCACAAGCTGACCGAAAGATGTGTGCCGAAGGTTCGAAGAGCTA
CATCCCTGCTGGGAAATGATGGTCGTGAAGGGGAGGACTCGAAATACGGG
TTCCCGGCCAAATCCGAGGAAATCATGATCGAATCTTCCCTGGCAAGGAC
CGCTCAAGACAGAAACGTTCTCTACAGCGATGTAACGCCATCCATCGGGC
GCCCTGATGGCGAAGAAAGCAACGAAGTTCAGATAACTTCTGTGCTGGCA
ATGGGTCAGGACCGGCCAGTTCAAGCACCAAGCACATGCTTCCCAGTGCC
ATACGAAGCGTACCACGAGTCTAGTGGTTCATCCATCCAGGAATGTAGCA
GCCTCTGTAAGTTTGGATGCCAATATGGGGATAAGTGTAACATGGATTTA
CGGCGCCTTGCATATTCAGAGACTGGGCTGAATAATGTCCCAACCAGCCC
AAACCACGAAGTACCGGTTGTGAGTGGTGGGGAAAGCATATCGGAAGCAA
GGTGTACTGCGACCCCTAGCGTTGGCAGCATGCGTAATGAGGTTGATAGT
GTACCGACCAAAGCACCCACAACAGCTGAAATTCATGGTGAACTGGAATG
TCTCACCCCTGGAAACTCGACGGCTTCTTCAGCTGATGAATCCTCACACG
AGGACTCTCCATTGTCCTTCGTCTCACCCACAAGAATGGAAGCAGAGCGG
GAAGGTTTCCCACCGTGTAACTTCCCACAAGTCAAGCAAAGTCTTTCAGG
AGATGATGCAAACAGCCAGAGGGGAAACGAAGAAGCCCAAGATCAAAACT
CCCCTGTAATCGGTCTGAGAGCTTTTTCCGGCGATTGTCTTAGCTGCGAA
ACCTTCGAAAATGTTTCTCCCCTGACAGACGAAGGGGAGAAACGCGGAAA
ATCGCCATTGATATCCAGTGATACTCCCGCAGAATTTAGAGGAGACAGCT
CAAAGGTGACGAAATATGTCCTACTTGACGCCACCGAAATGGCTTCTGGA
GGTTTATTTGCGTCACAACTTGGGGAAGCAAAGGACATATGTGCCGAAGA
CGTCGACATTGAAGCAAAGCCTGCTAAGGTTACTTGTGAAACGTTATCGG
TGAAGGACGCGGAGAACTTAAGCTGCCCCCACCTGCCCCAACCCATATAC
AAGCTACCTGACGGCACCCCGGGTGTTGATGCAATGCCGGCTTTGGAGAG
ATCATTGGTTGTTAGTAATGGAAAAGAAGTTAGTTCCGGAATTCTTCATC
TTCGGCGGCCCGGAAGTAACTCTCGAATCCTTCAGTACTCCCCTTCTGAT
CGAGCTTATCGGCTGCAGCGTAGGATGGAGCGCTTTCATCACTACTTCGA
AGAATTCTTAGAAACGGATGACATGGTATTTGAGACAACGCTTCGAAAAT
CAAGAGTGGCGAACCGTGTCCGTCGTTTCTTTGAAGATGGAGGGTCTCCA
ACGGAGGCCAAGAACTGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:270706..272223-

>Ggra7598.t1 ID=Ggra7598.t1|Name=Ggra7598.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000866_pilon:270706..272223- (Gracilaria gracilis GNS1m male)
ATGGTCCATCGTGAGGGACGTATCAGATGGAAGGGAGCAAAGAGGTTGTT
CAGCGTCCACAAGCTGACCGAAAGATGTGTGCCGAAGGTTCGAAGAGCTA
CATCCCTGCTGGGAAATGATGGTCGTGAAGGGGAGGACTCGAAATACGGG
TTCCCGGCCAAATCCGAGGAAATCATGATCGAATCTTCCCTGGCAAGGAC
CGCTCAAGACAGAAACGTTCTCTACAGCGATGTAACGCCATCCATCGGGC
GCCCTGATGGCGAAGAAAGCAACGAAGTTCAGATAACTTCTGTGCTGGCA
ATGGGTCAGGACCGGCCAGTTCAAGCACCAAGCACATGCTTCCCAGTGCC
ATACGAAGCGTACCACGAGTCTAGTGGTTCATCCATCCAGGAATGTAGCA
GCCTCTGTAAGTTTGGATGCCAATATGGGGATAAGTGTAACATGGATTTA
CGGCGCCTTGCATATTCAGAGACTGGGCTGAATAATGTCCCAACCAGCCC
AAACCACGAAGTACCGGTTGTGAGTGGTGGGGAAAGCATATCGGAAGCAA
GGTGTACTGCGACCCCTAGCGTTGGCAGCATGCGTAATGAGGTTGATAGT
GTACCGACCAAAGCACCCACAACAGCTGAAATTCATGGTGAACTGGAATG
TCTCACCCCTGGAAACTCGACGGCTTCTTCAGCTGATGAATCCTCACACG
AGGACTCTCCATTGTCCTTCGTCTCACCCACAAGAATGGAAGCAGAGCGG
GAAGGTTTCCCACCGTGTAACTTCCCACAAGTCAAGCAAAGTCTTTCAGG
AGATGATGCAAACAGCCAGAGGGGAAACGAAGAAGCCCAAGATCAAAACT
CCCCTGTAATCGGTCTGAGAGCTTTTTCCGGCGATTGTCTTAGCTGCGAA
ACCTTCGAAAATGTTTCTCCCCTGACAGACGAAGGGGAGAAACGCGGAAA
ATCGCCATTGATATCCAGTGATACTCCCGCAGAATTTAGAGGAGACAGCT
CAAAGGTGACGAAATATGTCCTACTTGACGCCACCGAAATGGCTTCTGGA
GGTTTATTTGCGTCACAACTTGGGGAAGCAAAGGACATATGTGCCGAAGA
CGTCGACATTGAAGCAAAGCCTGCTAAGGTTACTTGTGAAACGTTATCGG
TGAAGGACGCGGAGAACTTAAGCTGCCCCCACCTGCCCCAACCCATATAC
AAGCTACCTGACGGCACCCCGGGTGTTGATGCAATGCCGGCTTTGGAGAG
ATCATTGGTTGTTAGTAATGGAAAAGAAGTTAGTTCCGGAATTCTTCATC
TTCGGCGGCCCGGAAGTAACTCTCGAATCCTTCAGTACTCCCCTTCTGAT
CGAGCTTATCGGCTGCAGCGTAGGATGGAGCGCTTTCATCACTACTTCGA
AGAATTCTTAGAAACGGATGACATGGTATTTGAGACAACGCTTCGAAAAT
CAAGAGTGGCGAACCGTGTCCGTCGTTTCTTTGAAGATGGAGGGTCTCCA
ACGGAGGCCAAGAACTGA
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