Ggra7589.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7589.t1
Unique NameGgra7589.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length493
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:248532..250010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708653.1
Preferred namePAN3
PFAMsDUF4797
Max annot lvl2759|Eukaryota
KEGG koko:K12572
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0000288,GO:0000289,GO:0000290,GO:0000932,GO:0000956,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006605,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010603,GO:0010605,GO:0010606,GO:0010629,GO:0010638,GO:0015031,GO:0015833,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0031251,GO:0031334,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042886,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1902115,GO:1902117,GO:1990904
Evalue5.42e-68
EggNOG OGsKOG3741@1|root,KOG3741@2759|Eukaryota
Descriptionnuclear-transcribed mRNA poly(A) tail shortening
COG categoryA
BRITEko00000,ko00001,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7589Ggra7589Gracilaria gracilis GNS1m malegenetig00000866_pilon 248532..250010 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7589.t1.stop1Ggra7589.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 248532..248534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7589.t1.CDS1Ggra7589.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 248532..250010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7589.t1.exon1Ggra7589.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 248532..250010 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7589.t1.start1Ggra7589.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 250008..250010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7589.t1Ggra7589.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 248532..250010 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7589.t1 ID=Ggra7589.t1|Name=Ggra7589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MSPPPDRRVGPSFAQDRPSPLAAEFVPTRRWNNAQPGADMYANPSLRESA
RTEIALLLSRAHPTYAVPEYVGTYYAIVPLEARPTPVFGRAGPHGILYKG
VSASRGSIAALLRIVGAPPAPSAQIVRAGEAWKRVRHPALLCLKEVFTTR
QFTARTAANMVATNEVVFVYELSSRAETLFHVFLKNPPIPDHRYHPLPEA
TLWAIASQLLSAVAIVHSNRLALRDALTISRVLVTGRNRVRVSCVGLSDA
FDPSGGDHLPATSPRATTTNDRVSALQKGDLSSVGHILAVLALRIDPKIV
RGGALLVPEDVAVEAMRRLTPYSEDFIVLVMSLLRAAVPTSQVTTNQILG
MIGPRLALELGNVWTHCDALESMLFVEFDSSRMFRLLGLLGFVNERGDAG
VEPQWSETGDRYLLKLFRDYVFHRVDANGKPILDMAHVVECLSRLDVGSP
EQVLLSSRDGASLLIATYEDLRRCLLQSVDDLRRARQGLPNR*
back to top

spliced messenger RNA

>Ggra7589.t1 ID=Ggra7589.t1|Name=Ggra7589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000866_pilon:248532..250010- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCTCCTCCCGATCGCCGGGTCGGCCCAAGCTTCGCGCAAGACAG
ACCTTCTCCACTGGCAGCAGAATTTGTCCCCACCCGAAGATGGAACAATG
CTCAGCCGGGCGCCGATATGTATGCGAATCCATCTCTTCGCGAATCGGCG
CGAACAGAGATTGCTCTCCTGCTAAGTCGCGCCCATCCCACTTATGCTGT
TCCAGAATACGTTGGCACTTACTATGCAATTGTTCCACTTGAAGCGCGAC
CTACCCCAGTGTTTGGTCGAGCTGGCCCGCACGGAATTCTGTACAAAGGC
GTTTCTGCTTCCCGCGGCTCGATTGCTGCGTTGCTGCGAATTGTGGGTGC
CCCACCGGCCCCAAGTGCCCAAATTGTGCGCGCGGGAGAAGCATGGAAAC
GCGTTCGACATCCGGCACTTTTGTGCTTAAAGGAGGTGTTCACCACACGG
CAATTTACGGCGCGCACCGCGGCTAATATGGTAGCAACGAACGAAGTTGT
ATTTGTATATGAGTTGTCCAGTAGAGCCGAAACTCTGTTTCACGTCTTTC
TGAAGAATCCCCCAATACCAGATCATCGTTATCATCCATTACCGGAAGCT
ACACTTTGGGCAATCGCTTCTCAACTTCTTTCTGCGGTTGCTATTGTACA
TTCTAATCGACTTGCGTTACGCGACGCGCTCACGATCAGCCGTGTACTGG
TTACAGGACGAAATCGCGTGAGGGTGAGCTGCGTGGGTCTCAGCGATGCG
TTCGACCCGAGTGGAGGGGATCATCTCCCAGCCACGTCGCCGAGGGCTAC
TACTACCAACGACCGCGTCTCAGCTCTGCAAAAAGGTGATCTTTCAAGCG
TTGGACACATTCTCGCGGTTCTTGCGTTGCGAATAGACCCCAAGATTGTT
CGTGGTGGAGCACTACTGGTGCCAGAGGACGTTGCGGTGGAAGCCATGCG
ACGTCTAACACCGTACAGCGAAGATTTCATAGTGCTCGTTATGTCGTTGC
TACGCGCTGCTGTTCCCACTTCGCAGGTTACGACCAATCAGATCCTTGGC
ATGATTGGGCCGCGACTTGCTCTTGAGCTTGGGAATGTTTGGACTCATTG
CGACGCACTGGAAAGCATGCTGTTTGTAGAGTTTGATTCCAGCAGAATGT
TCAGGCTACTTGGCCTTCTTGGATTCGTGAATGAAAGAGGCGATGCGGGG
GTTGAGCCACAATGGTCAGAAACCGGAGATCGCTACCTACTTAAACTGTT
TCGGGATTACGTGTTCCACAGAGTCGACGCCAACGGAAAACCAATTTTGG
ATATGGCACATGTCGTTGAATGTCTATCCAGACTCGACGTTGGTTCTCCA
GAACAAGTTTTGCTGAGCTCTCGAGATGGTGCATCCCTTTTGATAGCTAC
TTACGAGGATCTGCGGCGATGTTTGCTCCAGTCTGTTGATGATCTCCGTC
GTGCACGTCAAGGATTACCTAATCGATAA
back to top

protein sequence of Ggra7589.t1

>Ggra7589.t1 ID=Ggra7589.t1|Name=Ggra7589.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MSPPPDRRVGPSFAQDRPSPLAAEFVPTRRWNNAQPGADMYANPSLRESA
RTEIALLLSRAHPTYAVPEYVGTYYAIVPLEARPTPVFGRAGPHGILYKG
VSASRGSIAALLRIVGAPPAPSAQIVRAGEAWKRVRHPALLCLKEVFTTR
QFTARTAANMVATNEVVFVYELSSRAETLFHVFLKNPPIPDHRYHPLPEA
TLWAIASQLLSAVAIVHSNRLALRDALTISRVLVTGRNRVRVSCVGLSDA
FDPSGGDHLPATSPRATTTNDRVSALQKGDLSSVGHILAVLALRIDPKIV
RGGALLVPEDVAVEAMRRLTPYSEDFIVLVMSLLRAAVPTSQVTTNQILG
MIGPRLALELGNVWTHCDALESMLFVEFDSSRMFRLLGLLGFVNERGDAG
VEPQWSETGDRYLLKLFRDYVFHRVDANGKPILDMAHVVECLSRLDVGSP
EQVLLSSRDGASLLIATYEDLRRCLLQSVDDLRRARQGLPNR*
back to top

mRNA from alignment at tig00000866_pilon:248532..250010-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7589.t1 ID=Ggra7589.t1|Name=Ggra7589.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000866_pilon:248532..250010- (Gracilaria gracilis GNS1m male)
ATGAGCCCTCCTCCCGATCGCCGGGTCGGCCCAAGCTTCGCGCAAGACAG
ACCTTCTCCACTGGCAGCAGAATTTGTCCCCACCCGAAGATGGAACAATG
CTCAGCCGGGCGCCGATATGTATGCGAATCCATCTCTTCGCGAATCGGCG
CGAACAGAGATTGCTCTCCTGCTAAGTCGCGCCCATCCCACTTATGCTGT
TCCAGAATACGTTGGCACTTACTATGCAATTGTTCCACTTGAAGCGCGAC
CTACCCCAGTGTTTGGTCGAGCTGGCCCGCACGGAATTCTGTACAAAGGC
GTTTCTGCTTCCCGCGGCTCGATTGCTGCGTTGCTGCGAATTGTGGGTGC
CCCACCGGCCCCAAGTGCCCAAATTGTGCGCGCGGGAGAAGCATGGAAAC
GCGTTCGACATCCGGCACTTTTGTGCTTAAAGGAGGTGTTCACCACACGG
CAATTTACGGCGCGCACCGCGGCTAATATGGTAGCAACGAACGAAGTTGT
ATTTGTATATGAGTTGTCCAGTAGAGCCGAAACTCTGTTTCACGTCTTTC
TGAAGAATCCCCCAATACCAGATCATCGTTATCATCCATTACCGGAAGCT
ACACTTTGGGCAATCGCTTCTCAACTTCTTTCTGCGGTTGCTATTGTACA
TTCTAATCGACTTGCGTTACGCGACGCGCTCACGATCAGCCGTGTACTGG
TTACAGGACGAAATCGCGTGAGGGTGAGCTGCGTGGGTCTCAGCGATGCG
TTCGACCCGAGTGGAGGGGATCATCTCCCAGCCACGTCGCCGAGGGCTAC
TACTACCAACGACCGCGTCTCAGCTCTGCAAAAAGGTGATCTTTCAAGCG
TTGGACACATTCTCGCGGTTCTTGCGTTGCGAATAGACCCCAAGATTGTT
CGTGGTGGAGCACTACTGGTGCCAGAGGACGTTGCGGTGGAAGCCATGCG
ACGTCTAACACCGTACAGCGAAGATTTCATAGTGCTCGTTATGTCGTTGC
TACGCGCTGCTGTTCCCACTTCGCAGGTTACGACCAATCAGATCCTTGGC
ATGATTGGGCCGCGACTTGCTCTTGAGCTTGGGAATGTTTGGACTCATTG
CGACGCACTGGAAAGCATGCTGTTTGTAGAGTTTGATTCCAGCAGAATGT
TCAGGCTACTTGGCCTTCTTGGATTCGTGAATGAAAGAGGCGATGCGGGG
GTTGAGCCACAATGGTCAGAAACCGGAGATCGCTACCTACTTAAACTGTT
TCGGGATTACGTGTTCCACAGAGTCGACGCCAACGGAAAACCAATTTTGG
ATATGGCACATGTCGTTGAATGTCTATCCAGACTCGACGTTGGTTCTCCA
GAACAAGTTTTGCTGAGCTCTCGAGATGGTGCATCCCTTTTGATAGCTAC
TTACGAGGATCTGCGGCGATGTTTGCTCCAGTCTGTTGATGATCTCCGTC
GTGCACGTCAAGGATTACCTAATCGATAA
back to top

Coding sequence (CDS) from alignment at tig00000866_pilon:248532..250010-

>Ggra7589.t1 ID=Ggra7589.t1|Name=Ggra7589.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000866_pilon:248532..250010- (Gracilaria gracilis GNS1m male)
ATGAGCCCTCCTCCCGATCGCCGGGTCGGCCCAAGCTTCGCGCAAGACAG
ACCTTCTCCACTGGCAGCAGAATTTGTCCCCACCCGAAGATGGAACAATG
CTCAGCCGGGCGCCGATATGTATGCGAATCCATCTCTTCGCGAATCGGCG
CGAACAGAGATTGCTCTCCTGCTAAGTCGCGCCCATCCCACTTATGCTGT
TCCAGAATACGTTGGCACTTACTATGCAATTGTTCCACTTGAAGCGCGAC
CTACCCCAGTGTTTGGTCGAGCTGGCCCGCACGGAATTCTGTACAAAGGC
GTTTCTGCTTCCCGCGGCTCGATTGCTGCGTTGCTGCGAATTGTGGGTGC
CCCACCGGCCCCAAGTGCCCAAATTGTGCGCGCGGGAGAAGCATGGAAAC
GCGTTCGACATCCGGCACTTTTGTGCTTAAAGGAGGTGTTCACCACACGG
CAATTTACGGCGCGCACCGCGGCTAATATGGTAGCAACGAACGAAGTTGT
ATTTGTATATGAGTTGTCCAGTAGAGCCGAAACTCTGTTTCACGTCTTTC
TGAAGAATCCCCCAATACCAGATCATCGTTATCATCCATTACCGGAAGCT
ACACTTTGGGCAATCGCTTCTCAACTTCTTTCTGCGGTTGCTATTGTACA
TTCTAATCGACTTGCGTTACGCGACGCGCTCACGATCAGCCGTGTACTGG
TTACAGGACGAAATCGCGTGAGGGTGAGCTGCGTGGGTCTCAGCGATGCG
TTCGACCCGAGTGGAGGGGATCATCTCCCAGCCACGTCGCCGAGGGCTAC
TACTACCAACGACCGCGTCTCAGCTCTGCAAAAAGGTGATCTTTCAAGCG
TTGGACACATTCTCGCGGTTCTTGCGTTGCGAATAGACCCCAAGATTGTT
CGTGGTGGAGCACTACTGGTGCCAGAGGACGTTGCGGTGGAAGCCATGCG
ACGTCTAACACCGTACAGCGAAGATTTCATAGTGCTCGTTATGTCGTTGC
TACGCGCTGCTGTTCCCACTTCGCAGGTTACGACCAATCAGATCCTTGGC
ATGATTGGGCCGCGACTTGCTCTTGAGCTTGGGAATGTTTGGACTCATTG
CGACGCACTGGAAAGCATGCTGTTTGTAGAGTTTGATTCCAGCAGAATGT
TCAGGCTACTTGGCCTTCTTGGATTCGTGAATGAAAGAGGCGATGCGGGG
GTTGAGCCACAATGGTCAGAAACCGGAGATCGCTACCTACTTAAACTGTT
TCGGGATTACGTGTTCCACAGAGTCGACGCCAACGGAAAACCAATTTTGG
ATATGGCACATGTCGTTGAATGTCTATCCAGACTCGACGTTGGTTCTCCA
GAACAAGTTTTGCTGAGCTCTCGAGATGGTGCATCCCTTTTGATAGCTAC
TTACGAGGATCTGCGGCGATGTTTGCTCCAGTCTGTTGATGATCTCCGTC
GTGCACGTCAAGGATTACCTAATCGATAA
back to top