Ggra7584.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7584.t1
Unique Name	Ggra7584.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	437

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:121889..123199 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7584	Ggra7584	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 121889..123199 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7584.t1.stop1	Ggra7584.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 121889..121891 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7584.t1.CDS1	Ggra7584.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 121889..123199 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7584.t1.exon1	Ggra7584.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 121889..123199 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7584.t1.start1	Ggra7584.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 123197..123199 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7584.t1	Ggra7584.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 121889..123199 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:121889..123199-
coding sequence from alignment at tig00000866_pilon:121889..123199-

mRNA sequence

>Ggra7584.t1 ID=Ggra7584.t1|Name=Ggra7584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=437bp
MNRNENRGKQFCVVDQFLFTMIPAGSPFKETTALVREIIRSPIPDNIVNL
KMISCNSFTLAFCFALLPLATGTSFKYVGFGGGYSSQNGVFAASTVLGSG
SPVSIGTAASDDIVSGSTSVISPVEATESDELSPPIGSPEVVSNIELSSI
LGRGLQADVPDYREASASPGQTYTTSDSGNRKTKSNKNVSLEKAGNAPVP
KVCWTMSKRCCYEEVQKGYECKDFYAYKYARCHPVIAYERICGEIKERPA
NHPRPKGRVKYEETVLKNYDARYGPHVAGYPADGESEYYKTDTIPAKPHG
VSGTPFPTPQSYQSGSGGVANNGYEATGSDGNTLSVPPYQTANNVQAPGP
GSSQEENTAKPMHKTSGSTANTGSTYKVNAQPNRSHGKTLKAKSDSMTGA
TGQEQAPGQQTSYGAGAAPVSPLPENGPSYRVVAQV*

spliced messenger RNA

>Ggra7584.t1 ID=Ggra7584.t1|Name=Ggra7584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000866_pilon:121889..123199- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGCAATGAGAATAGAGGCAAACAGTTCTGTGTGGTGGACCAATT
CTTGTTCACCATGATACCAGCCGGGAGTCCATTTAAAGAAACGACAGCGT
TGGTGAGAGAAATTATTCGCTCACCAATACCCGATAATATTGTCAACCTC
AAGATGATCTCCTGCAACTCTTTCACTCTTGCATTCTGCTTCGCGTTGCT
TCCCCTCGCAACAGGCACCTCCTTCAAGTATGTTGGATTCGGCGGAGGAT
ACTCTTCACAAAATGGAGTGTTCGCGGCTTCGACTGTTCTCGGGAGTGGG
AGCCCCGTAAGTATTGGAACTGCCGCTTCGGATGACATTGTGAGCGGCTC
AACTTCAGTGATTTCCCCGGTGGAGGCAACCGAAAGTGATGAATTATCTC
CGCCGATAGGCAGTCCGGAAGTAGTATCAAATATTGAGCTTTCTTCTATC
CTTGGGCGAGGGTTGCAAGCAGATGTGCCCGATTACAGGGAAGCCTCGGC
GTCGCCAGGACAAACATATACAACCAGTGATTCTGGAAACCGAAAGACAA
AATCAAACAAGAACGTCTCTTTGGAAAAAGCCGGAAATGCCCCTGTTCCA
AAAGTCTGTTGGACAATGTCGAAACGGTGTTGCTATGAAGAGGTGCAGAA
AGGTTATGAGTGTAAAGACTTCTACGCATACAAGTACGCAAGATGTCACC
CAGTTATAGCTTACGAGCGAATCTGCGGTGAAATTAAGGAGAGACCTGCT
AATCATCCGCGTCCGAAGGGGCGTGTCAAATACGAAGAAACTGTGCTCAA
GAACTACGATGCCAGATATGGGCCACATGTGGCCGGGTACCCGGCGGATG
GTGAGAGTGAGTACTACAAGACAGATACTATTCCAGCAAAGCCTCATGGG
GTTTCAGGAACGCCTTTCCCCACTCCTCAATCATACCAATCTGGGAGTGG
TGGTGTGGCCAACAACGGTTACGAGGCGACAGGTAGCGATGGGAACACGC
TTTCCGTTCCTCCGTACCAGACTGCGAATAATGTCCAGGCACCGGGACCC
GGAAGTTCACAGGAGGAAAATACCGCAAAACCAATGCATAAGACCTCTGG
AAGTACGGCAAATACAGGTAGTACATACAAGGTCAATGCACAACCCAACC
GAAGTCACGGCAAGACCCTCAAGGCCAAATCAGACAGTATGACAGGAGCA
ACCGGACAGGAACAAGCACCCGGGCAGCAGACAAGTTATGGCGCGGGTGC
AGCTCCGGTATCCCCTCTGCCAGAAAACGGACCGTCATATCGAGTAGTCG
CACAGGTATGA

protein sequence of Ggra7584.t1

>Ggra7584.t1 ID=Ggra7584.t1|Name=Ggra7584.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=437bp
MNRNENRGKQFCVVDQFLFTMIPAGSPFKETTALVREIIRSPIPDNIVNL
KMISCNSFTLAFCFALLPLATGTSFKYVGFGGGYSSQNGVFAASTVLGSG
SPVSIGTAASDDIVSGSTSVISPVEATESDELSPPIGSPEVVSNIELSSI
LGRGLQADVPDYREASASPGQTYTTSDSGNRKTKSNKNVSLEKAGNAPVP
KVCWTMSKRCCYEEVQKGYECKDFYAYKYARCHPVIAYERICGEIKERPA
NHPRPKGRVKYEETVLKNYDARYGPHVAGYPADGESEYYKTDTIPAKPHG
VSGTPFPTPQSYQSGSGGVANNGYEATGSDGNTLSVPPYQTANNVQAPGP
GSSQEENTAKPMHKTSGSTANTGSTYKVNAQPNRSHGKTLKAKSDSMTGA
TGQEQAPGQQTSYGAGAAPVSPLPENGPSYRVVAQV*

mRNA from alignment at tig00000866_pilon:121889..123199-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7584.t1 ID=Ggra7584.t1|Name=Ggra7584.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1311bp|location=Sequence derived from alignment at tig00000866_pilon:121889..123199- (Gracilaria gracilis GNS1m male)
ATGAATCGCAATGAGAATAGAGGCAAACAGTTCTGTGTGGTGGACCAATT
CTTGTTCACCATGATACCAGCCGGGAGTCCATTTAAAGAAACGACAGCGT
TGGTGAGAGAAATTATTCGCTCACCAATACCCGATAATATTGTCAACCTC
AAGATGATCTCCTGCAACTCTTTCACTCTTGCATTCTGCTTCGCGTTGCT
TCCCCTCGCAACAGGCACCTCCTTCAAGTATGTTGGATTCGGCGGAGGAT
ACTCTTCACAAAATGGAGTGTTCGCGGCTTCGACTGTTCTCGGGAGTGGG
AGCCCCGTAAGTATTGGAACTGCCGCTTCGGATGACATTGTGAGCGGCTC
AACTTCAGTGATTTCCCCGGTGGAGGCAACCGAAAGTGATGAATTATCTC
CGCCGATAGGCAGTCCGGAAGTAGTATCAAATATTGAGCTTTCTTCTATC
CTTGGGCGAGGGTTGCAAGCAGATGTGCCCGATTACAGGGAAGCCTCGGC
GTCGCCAGGACAAACATATACAACCAGTGATTCTGGAAACCGAAAGACAA
AATCAAACAAGAACGTCTCTTTGGAAAAAGCCGGAAATGCCCCTGTTCCA
AAAGTCTGTTGGACAATGTCGAAACGGTGTTGCTATGAAGAGGTGCAGAA
AGGTTATGAGTGTAAAGACTTCTACGCATACAAGTACGCAAGATGTCACC
CAGTTATAGCTTACGAGCGAATCTGCGGTGAAATTAAGGAGAGACCTGCT
AATCATCCGCGTCCGAAGGGGCGTGTCAAATACGAAGAAACTGTGCTCAA
GAACTACGATGCCAGATATGGGCCACATGTGGCCGGGTACCCGGCGGATG
GTGAGAGTGAGTACTACAAGACAGATACTATTCCAGCAAAGCCTCATGGG
GTTTCAGGAACGCCTTTCCCCACTCCTCAATCATACCAATCTGGGAGTGG
TGGTGTGGCCAACAACGGTTACGAGGCGACAGGTAGCGATGGGAACACGC
TTTCCGTTCCTCCGTACCAGACTGCGAATAATGTCCAGGCACCGGGACCC
GGAAGTTCACAGGAGGAAAATACCGCAAAACCAATGCATAAGACCTCTGG
AAGTACGGCAAATACAGGTAGTACATACAAGGTCAATGCACAACCCAACC
GAAGTCACGGCAAGACCCTCAAGGCCAAATCAGACAGTATGACAGGAGCA
ACCGGACAGGAACAAGCACCCGGGCAGCAGACAAGTTATGGCGCGGGTGC
AGCTCCGGTATCCCCTCTGCCAGAAAACGGACCGTCATATCGAGTAGTCG
CACAGGTATGA

Coding sequence (CDS) from alignment at tig00000866_pilon:121889..123199-

>Ggra7584.t1 ID=Ggra7584.t1|Name=Ggra7584.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1311bp|location=Sequence derived from alignment at tig00000866_pilon:121889..123199- (Gracilaria gracilis GNS1m male)
ATGAATCGCAATGAGAATAGAGGCAAACAGTTCTGTGTGGTGGACCAATT
CTTGTTCACCATGATACCAGCCGGGAGTCCATTTAAAGAAACGACAGCGT
TGGTGAGAGAAATTATTCGCTCACCAATACCCGATAATATTGTCAACCTC
AAGATGATCTCCTGCAACTCTTTCACTCTTGCATTCTGCTTCGCGTTGCT
TCCCCTCGCAACAGGCACCTCCTTCAAGTATGTTGGATTCGGCGGAGGAT
ACTCTTCACAAAATGGAGTGTTCGCGGCTTCGACTGTTCTCGGGAGTGGG
AGCCCCGTAAGTATTGGAACTGCCGCTTCGGATGACATTGTGAGCGGCTC
AACTTCAGTGATTTCCCCGGTGGAGGCAACCGAAAGTGATGAATTATCTC
CGCCGATAGGCAGTCCGGAAGTAGTATCAAATATTGAGCTTTCTTCTATC
CTTGGGCGAGGGTTGCAAGCAGATGTGCCCGATTACAGGGAAGCCTCGGC
GTCGCCAGGACAAACATATACAACCAGTGATTCTGGAAACCGAAAGACAA
AATCAAACAAGAACGTCTCTTTGGAAAAAGCCGGAAATGCCCCTGTTCCA
AAAGTCTGTTGGACAATGTCGAAACGGTGTTGCTATGAAGAGGTGCAGAA
AGGTTATGAGTGTAAAGACTTCTACGCATACAAGTACGCAAGATGTCACC
CAGTTATAGCTTACGAGCGAATCTGCGGTGAAATTAAGGAGAGACCTGCT
AATCATCCGCGTCCGAAGGGGCGTGTCAAATACGAAGAAACTGTGCTCAA
GAACTACGATGCCAGATATGGGCCACATGTGGCCGGGTACCCGGCGGATG
GTGAGAGTGAGTACTACAAGACAGATACTATTCCAGCAAAGCCTCATGGG
GTTTCAGGAACGCCTTTCCCCACTCCTCAATCATACCAATCTGGGAGTGG
TGGTGTGGCCAACAACGGTTACGAGGCGACAGGTAGCGATGGGAACACGC
TTTCCGTTCCTCCGTACCAGACTGCGAATAATGTCCAGGCACCGGGACCC
GGAAGTTCACAGGAGGAAAATACCGCAAAACCAATGCATAAGACCTCTGG
AAGTACGGCAAATACAGGTAGTACATACAAGGTCAATGCACAACCCAACC
GAAGTCACGGCAAGACCCTCAAGGCCAAATCAGACAGTATGACAGGAGCA
ACCGGACAGGAACAAGCACCCGGGCAGCAGACAAGTTATGGCGCGGGTGC
AGCTCCGGTATCCCCTCTGCCAGAAAACGGACCGTCATATCGAGTAGTCG
CACAGGTATGA