Ggra7583.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7583.t1
Unique Name	Ggra7583.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:115662..116570 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705724.1
PFAMs	Mito_carr
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K05857,ko:K14684,ko:K15111
KEGG TC	2.A.29.18,2.A.29.23
KEGG Reaction	R03332,R03435,R10952
KEGG Pathway	ko00562,ko01100,ko04020,ko04070,ko04919,ko04933,map00562,map01100,map04020,map04070,map04919,map04933
KEGG Module	M00130
Evalue	6.81e-27
EggNOG OGs	KOG0768@1\|root,KOG0768@2759\|Eukaryota
EC	3.1.4.11
Description	S-adenosyl-L-methionine transmembrane transport
COG category	U
BRITE	ko00000,ko00001,ko00002,ko01000,ko02000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7583	Ggra7583	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 115662..116570 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7583.t1.stop1	Ggra7583.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 115662..115664 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7583.t1.CDS1	Ggra7583.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 115662..116570 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7583.t1.exon1	Ggra7583.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 115662..116570 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7583.t1.start1	Ggra7583.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 116568..116570 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7583.t1	Ggra7583.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 115662..116570 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:115662..116570-
coding sequence from alignment at tig00000866_pilon:115662..116570-

mRNA sequence

>Ggra7583.t1 ID=Ggra7583.t1|Name=Ggra7583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MAQVTAEDAQPKTKEPIVVHLKSLWKTVQSNIKDGTLPNVAVARLTSVLL
LHPLDTFKCRLQHTSASSVRAVGAYARNAPPFSGLPAAILGQIPYTALSL
ALFLHLNDRLTQVPERRRMITAALISDSVAALWLTPFETMKLRVQTSVQP
CVRRAFRSGGLYSGLNAQLLRDVPYRSAHLALLTALAIRQNRRDVRGTFG
SACIAAAVGMVTTPLDVVRTRVMAQKANSAARVYSSALDCANKIMKSEGF
SALFKGVVPRAVYMGVSVLVFSAAFTTVERFEEKYWKKKGAVVLRSTEKA
AE*

spliced messenger RNA

>Ggra7583.t1 ID=Ggra7583.t1|Name=Ggra7583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000866_pilon:115662..116570- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCAGGTGACCGCCGAAGATGCTCAGCCCAAGACAAAGGAGCCCAT
TGTGGTGCATTTGAAGTCATTATGGAAGACTGTTCAAAGCAATATCAAGG
ACGGCACGTTACCCAACGTTGCCGTGGCTCGCCTCACGTCCGTGCTATTA
CTCCACCCGTTGGACACCTTCAAGTGCCGTCTCCAACATACCTCCGCCAG
TTCGGTGCGTGCCGTCGGCGCCTACGCGCGAAATGCGCCGCCATTCTCAG
GACTTCCGGCAGCCATTCTAGGACAAATACCGTACACAGCGCTATCACTC
GCGCTCTTTCTTCATCTCAACGATCGTTTGACACAGGTTCCAGAGAGAAG
AAGGATGATAACCGCTGCGTTGATTTCCGATAGTGTAGCAGCCCTATGGC
TCACTCCTTTTGAAACCATGAAACTTCGTGTGCAAACCAGTGTACAACCT
TGTGTGCGAAGGGCCTTTCGGAGCGGTGGTTTGTATTCGGGCTTGAATGC
TCAGCTTTTGAGAGACGTACCGTATCGAAGTGCGCATCTTGCTTTGCTTA
CCGCGCTGGCCATTCGCCAAAATCGACGTGATGTTCGCGGTACTTTTGGT
AGTGCGTGTATCGCCGCCGCTGTAGGAATGGTTACAACACCGCTGGATGT
GGTTCGAACTAGAGTAATGGCTCAGAAGGCAAACAGTGCGGCAAGGGTCT
ATTCTAGCGCATTGGATTGTGCGAATAAGATCATGAAGTCTGAGGGTTTT
AGCGCACTGTTCAAGGGCGTGGTGCCAAGAGCTGTTTATATGGGTGTCAG
TGTGTTGGTTTTCTCTGCCGCGTTTACAACCGTTGAGCGTTTTGAAGAGA
AGTATTGGAAGAAGAAAGGTGCCGTCGTTTTGCGTTCTACTGAAAAAGCT
GCCGAGTGA

protein sequence of Ggra7583.t1

>Ggra7583.t1 ID=Ggra7583.t1|Name=Ggra7583.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MAQVTAEDAQPKTKEPIVVHLKSLWKTVQSNIKDGTLPNVAVARLTSVLL
LHPLDTFKCRLQHTSASSVRAVGAYARNAPPFSGLPAAILGQIPYTALSL
ALFLHLNDRLTQVPERRRMITAALISDSVAALWLTPFETMKLRVQTSVQP
CVRRAFRSGGLYSGLNAQLLRDVPYRSAHLALLTALAIRQNRRDVRGTFG
SACIAAAVGMVTTPLDVVRTRVMAQKANSAARVYSSALDCANKIMKSEGF
SALFKGVVPRAVYMGVSVLVFSAAFTTVERFEEKYWKKKGAVVLRSTEKA
AE*

mRNA from alignment at tig00000866_pilon:115662..116570-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7583.t1 ID=Ggra7583.t1|Name=Ggra7583.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000866_pilon:115662..116570- (Gracilaria gracilis GNS1m male)
ATGGCTCAGGTGACCGCCGAAGATGCTCAGCCCAAGACAAAGGAGCCCAT
TGTGGTGCATTTGAAGTCATTATGGAAGACTGTTCAAAGCAATATCAAGG
ACGGCACGTTACCCAACGTTGCCGTGGCTCGCCTCACGTCCGTGCTATTA
CTCCACCCGTTGGACACCTTCAAGTGCCGTCTCCAACATACCTCCGCCAG
TTCGGTGCGTGCCGTCGGCGCCTACGCGCGAAATGCGCCGCCATTCTCAG
GACTTCCGGCAGCCATTCTAGGACAAATACCGTACACAGCGCTATCACTC
GCGCTCTTTCTTCATCTCAACGATCGTTTGACACAGGTTCCAGAGAGAAG
AAGGATGATAACCGCTGCGTTGATTTCCGATAGTGTAGCAGCCCTATGGC
TCACTCCTTTTGAAACCATGAAACTTCGTGTGCAAACCAGTGTACAACCT
TGTGTGCGAAGGGCCTTTCGGAGCGGTGGTTTGTATTCGGGCTTGAATGC
TCAGCTTTTGAGAGACGTACCGTATCGAAGTGCGCATCTTGCTTTGCTTA
CCGCGCTGGCCATTCGCCAAAATCGACGTGATGTTCGCGGTACTTTTGGT
AGTGCGTGTATCGCCGCCGCTGTAGGAATGGTTACAACACCGCTGGATGT
GGTTCGAACTAGAGTAATGGCTCAGAAGGCAAACAGTGCGGCAAGGGTCT
ATTCTAGCGCATTGGATTGTGCGAATAAGATCATGAAGTCTGAGGGTTTT
AGCGCACTGTTCAAGGGCGTGGTGCCAAGAGCTGTTTATATGGGTGTCAG
TGTGTTGGTTTTCTCTGCCGCGTTTACAACCGTTGAGCGTTTTGAAGAGA
AGTATTGGAAGAAGAAAGGTGCCGTCGTTTTGCGTTCTACTGAAAAAGCT
GCCGAGTGA

Coding sequence (CDS) from alignment at tig00000866_pilon:115662..116570-

>Ggra7583.t1 ID=Ggra7583.t1|Name=Ggra7583.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000866_pilon:115662..116570- (Gracilaria gracilis GNS1m male)
ATGGCTCAGGTGACCGCCGAAGATGCTCAGCCCAAGACAAAGGAGCCCAT
TGTGGTGCATTTGAAGTCATTATGGAAGACTGTTCAAAGCAATATCAAGG
ACGGCACGTTACCCAACGTTGCCGTGGCTCGCCTCACGTCCGTGCTATTA
CTCCACCCGTTGGACACCTTCAAGTGCCGTCTCCAACATACCTCCGCCAG
TTCGGTGCGTGCCGTCGGCGCCTACGCGCGAAATGCGCCGCCATTCTCAG
GACTTCCGGCAGCCATTCTAGGACAAATACCGTACACAGCGCTATCACTC
GCGCTCTTTCTTCATCTCAACGATCGTTTGACACAGGTTCCAGAGAGAAG
AAGGATGATAACCGCTGCGTTGATTTCCGATAGTGTAGCAGCCCTATGGC
TCACTCCTTTTGAAACCATGAAACTTCGTGTGCAAACCAGTGTACAACCT
TGTGTGCGAAGGGCCTTTCGGAGCGGTGGTTTGTATTCGGGCTTGAATGC
TCAGCTTTTGAGAGACGTACCGTATCGAAGTGCGCATCTTGCTTTGCTTA
CCGCGCTGGCCATTCGCCAAAATCGACGTGATGTTCGCGGTACTTTTGGT
AGTGCGTGTATCGCCGCCGCTGTAGGAATGGTTACAACACCGCTGGATGT
GGTTCGAACTAGAGTAATGGCTCAGAAGGCAAACAGTGCGGCAAGGGTCT
ATTCTAGCGCATTGGATTGTGCGAATAAGATCATGAAGTCTGAGGGTTTT
AGCGCACTGTTCAAGGGCGTGGTGCCAAGAGCTGTTTATATGGGTGTCAG
TGTGTTGGTTTTCTCTGCCGCGTTTACAACCGTTGAGCGTTTTGAAGAGA
AGTATTGGAAGAAGAAAGGTGCCGTCGTTTTGCGTTCTACTGAAAAAGCT
GCCGAGTGA