Ggra758.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra758.t1
Unique NameGgra758.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000164_piloncontigtig00000164_pilon:280021..281061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR248CT
Preferred namePET127
PFAMsPet127
Max annot lvl2759|Eukaryota
GOsGO:0000957,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000966,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006139,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010608,GO:0016070,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031975,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090304,GO:0140053,GO:1901360,GO:1901361,GO:1901575,GO:1903311
Evalue8e-42
EggNOG OGs2CMAW@1|root,2QPU6@2759|Eukaryota
Descriptionmitochondrial RNA 5'-end processing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra758Ggra758Gracilaria gracilis GNS1m malegenetig00000164_pilon 280021..281061 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra758.t1.start1Ggra758.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000164_pilon 280021..280023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra758.t1.CDS1Ggra758.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000164_pilon 280021..281061 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra758.t1.exon1Ggra758.t1.exon1Gracilaria gracilis GNS1m maleexontig00000164_pilon 280021..281061 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra758.t1.stop1Ggra758.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000164_pilon 281059..281061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra758.t1Ggra758.t1Gracilaria gracilis GNS1m malepolypeptidetig00000164_pilon 280021..281061 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra758.t1 ID=Ggra758.t1|Name=Ggra758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MNPSADEHQFYHYSQASQFVLRAQIDCRNPDTGEVFDVKTRAVAKIRYDL
PNYLQYASHKLRFLKGKTDSYEREFYDMVRTVFLKYALQLRIGRMSGALV
AYHNTTELLALEYISLKEIESYVFGSQRWADVAFGTAISLLERILDTITT
TVPLDNTDDRLKVMLYTEWSKLRMYVFVQHLQKDEQDPFGDAEFQRRERD
SSQPPQVEEGVITNLQAVGQWHVDPDYHDNACPGVSILGAYKGFKQFGAS
WVPGKEKPSTETKRNVANSDVFNYTKFDLSSLTADKLRVWELKVVPLVND
EVHPRKNISLDEGDTFRLKYHFAEVTDLKGEHYSKFISGLARIYLR*
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spliced messenger RNA

>Ggra758.t1 ID=Ggra758.t1|Name=Ggra758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000164_pilon:280021..281061+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atGAACCCATCCGCCGATGAGCACCAGTTTTATCACTACTCTCAGGCTTC
CCAGTTTGTGCTTCGCGCCCAGATTGATTGTCGCAACCCCGACACCGGCG
AGGTGTTCGATGTCAAAACGCGTGCCGTCGCCAAGATTCGATATGATCTG
CCAAACTACTTGCAGTACGCTTCGCACAAGCTTCGCTTTCTCAAGGGCAA
GACCGACTCGTACGAGCGTGAGTTCTACGATATGGTTCGCACAGTCTTCC
TCAAGTACGCGCTTCAACTCCGCATTGGACGCATGTCGGGCGCGCTTGTC
GCCTATCACAACACCACCGAGTTGCTCGCCTTGGAATACATCTCGCTCAA
GGAGATTGAATCGTACGTGTTTGGTAGTCAACGATGGGCTGATGTCGCAT
TTGGTACTGCCATTAGTCTCCTGGAACGCATTCTGGACACCATCACCACC
ACTGTGCCTCTGGACAACACTGACGACCGGTTGAAGGTCATGTTGTACAC
AGAATGGTCCAAGTTGAGGATGTACGTGTTCGTGCAGCACTTGCAGAAGG
ATGAACAAGATCCTTTCGGAGATGCCGAATTCCAGCGCCGAGAACGCGAC
AGCTCTCAACCACCCCAAGTTGAGGAAGGTGTTATAACCAATCTGCAAGC
TGTCGGTCAGTGGCACGTCGACCCTGATTATCATGATAACGCGTGTCCAG
GAGTGTCCATTCTCGGCGCGTACAAGGGATTCAAACAGTTTGGCGCTTCG
TGGGTGCCCGGCAAGGAGAAGCCTTCAACGGAAACCAAACGAAATGTGGC
GAACAGTGATGTTTTCAACTACACCAAGTTTGACCTGTCAAGTTTGACGG
CTGACAAGCTTCGCGTCTGGGAACTTAAAGTTGTGCCGTTGGTCAATGAT
GAAGTGCATCCGCGAAAGAATATCTCATTGGATGAAGGCGATACCTTCAG
ATTGAAGTACCACTTTGCCGAGGTTACCGACCTGAAGGGTGAGCACTACT
CCAAATTCATCAGCGGTTTGGCGCGCATCTATCTGAGATAG
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protein sequence of Ggra758.t1

>Ggra758.t1 ID=Ggra758.t1|Name=Ggra758.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MNPSADEHQFYHYSQASQFVLRAQIDCRNPDTGEVFDVKTRAVAKIRYDL
PNYLQYASHKLRFLKGKTDSYEREFYDMVRTVFLKYALQLRIGRMSGALV
AYHNTTELLALEYISLKEIESYVFGSQRWADVAFGTAISLLERILDTITT
TVPLDNTDDRLKVMLYTEWSKLRMYVFVQHLQKDEQDPFGDAEFQRRERD
SSQPPQVEEGVITNLQAVGQWHVDPDYHDNACPGVSILGAYKGFKQFGAS
WVPGKEKPSTETKRNVANSDVFNYTKFDLSSLTADKLRVWELKVVPLVND
EVHPRKNISLDEGDTFRLKYHFAEVTDLKGEHYSKFISGLARIYLR*
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mRNA from alignment at tig00000164_pilon:280021..281061+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra758.t1 ID=Ggra758.t1|Name=Ggra758.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000164_pilon:280021..281061+ (Gracilaria gracilis GNS1m male)
atGAACCCATCCGCCGATGAGCACCAGTTTTATCACTACTCTCAGGCTTC
CCAGTTTGTGCTTCGCGCCCAGATTGATTGTCGCAACCCCGACACCGGCG
AGGTGTTCGATGTCAAAACGCGTGCCGTCGCCAAGATTCGATATGATCTG
CCAAACTACTTGCAGTACGCTTCGCACAAGCTTCGCTTTCTCAAGGGCAA
GACCGACTCGTACGAGCGTGAGTTCTACGATATGGTTCGCACAGTCTTCC
TCAAGTACGCGCTTCAACTCCGCATTGGACGCATGTCGGGCGCGCTTGTC
GCCTATCACAACACCACCGAGTTGCTCGCCTTGGAATACATCTCGCTCAA
GGAGATTGAATCGTACGTGTTTGGTAGTCAACGATGGGCTGATGTCGCAT
TTGGTACTGCCATTAGTCTCCTGGAACGCATTCTGGACACCATCACCACC
ACTGTGCCTCTGGACAACACTGACGACCGGTTGAAGGTCATGTTGTACAC
AGAATGGTCCAAGTTGAGGATGTACGTGTTCGTGCAGCACTTGCAGAAGG
ATGAACAAGATCCTTTCGGAGATGCCGAATTCCAGCGCCGAGAACGCGAC
AGCTCTCAACCACCCCAAGTTGAGGAAGGTGTTATAACCAATCTGCAAGC
TGTCGGTCAGTGGCACGTCGACCCTGATTATCATGATAACGCGTGTCCAG
GAGTGTCCATTCTCGGCGCGTACAAGGGATTCAAACAGTTTGGCGCTTCG
TGGGTGCCCGGCAAGGAGAAGCCTTCAACGGAAACCAAACGAAATGTGGC
GAACAGTGATGTTTTCAACTACACCAAGTTTGACCTGTCAAGTTTGACGG
CTGACAAGCTTCGCGTCTGGGAACTTAAAGTTGTGCCGTTGGTCAATGAT
GAAGTGCATCCGCGAAAGAATATCTCATTGGATGAAGGCGATACCTTCAG
ATTGAAGTACCACTTTGCCGAGGTTACCGACCTGAAGGGTGAGCACTACT
CCAAATTCATCAGCGGTTTGGCGCGCATCTATCTGAGATAG
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Coding sequence (CDS) from alignment at tig00000164_pilon:280021..281061+

>Ggra758.t1 ID=Ggra758.t1|Name=Ggra758.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000164_pilon:280021..281061+ (Gracilaria gracilis GNS1m male)
atGAACCCATCCGCCGATGAGCACCAGTTTTATCACTACTCTCAGGCTTC
CCAGTTTGTGCTTCGCGCCCAGATTGATTGTCGCAACCCCGACACCGGCG
AGGTGTTCGATGTCAAAACGCGTGCCGTCGCCAAGATTCGATATGATCTG
CCAAACTACTTGCAGTACGCTTCGCACAAGCTTCGCTTTCTCAAGGGCAA
GACCGACTCGTACGAGCGTGAGTTCTACGATATGGTTCGCACAGTCTTCC
TCAAGTACGCGCTTCAACTCCGCATTGGACGCATGTCGGGCGCGCTTGTC
GCCTATCACAACACCACCGAGTTGCTCGCCTTGGAATACATCTCGCTCAA
GGAGATTGAATCGTACGTGTTTGGTAGTCAACGATGGGCTGATGTCGCAT
TTGGTACTGCCATTAGTCTCCTGGAACGCATTCTGGACACCATCACCACC
ACTGTGCCTCTGGACAACACTGACGACCGGTTGAAGGTCATGTTGTACAC
AGAATGGTCCAAGTTGAGGATGTACGTGTTCGTGCAGCACTTGCAGAAGG
ATGAACAAGATCCTTTCGGAGATGCCGAATTCCAGCGCCGAGAACGCGAC
AGCTCTCAACCACCCCAAGTTGAGGAAGGTGTTATAACCAATCTGCAAGC
TGTCGGTCAGTGGCACGTCGACCCTGATTATCATGATAACGCGTGTCCAG
GAGTGTCCATTCTCGGCGCGTACAAGGGATTCAAACAGTTTGGCGCTTCG
TGGGTGCCCGGCAAGGAGAAGCCTTCAACGGAAACCAAACGAAATGTGGC
GAACAGTGATGTTTTCAACTACACCAAGTTTGACCTGTCAAGTTTGACGG
CTGACAAGCTTCGCGTCTGGGAACTTAAAGTTGTGCCGTTGGTCAATGAT
GAAGTGCATCCGCGAAAGAATATCTCATTGGATGAAGGCGATACCTTCAG
ATTGAAGTACCACTTTGCCGAGGTTACCGACCTGAAGGGTGAGCACTACT
CCAAATTCATCAGCGGTTTGGCGCGCATCTATCTGAGATAG
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