Ggra7578.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7578.t1
Unique NameGgra7578.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:106154..107041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SP35
Preferred nameUPM1
PFAMsTP_methylase
Max annot lvl3041|Chlorophyta
KEGG rclassRC00003,RC00871
KEGG koko:K02303
KEGG ReactionR03194
KEGG Pathwayko00860,ko01100,ko01110,ko01120,map00860,map01100,map01110,map01120
KEGG ModuleM00121
Evalue4.93e-59
EggNOG OGsCOG0007@1|root,KOG1527@2759|Eukaryota,37KMV@33090|Viridiplantae,34H2K@3041|Chlorophyta
EC2.1.1.107
DescriptionTetrapyrrole (Corrin/Porphyrin) Methylases
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7578Ggra7578Gracilaria gracilis GNS1m malegenetig00000866_pilon 106154..107041 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7578.t1.start1Ggra7578.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 106154..106156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7578.t1.CDS1Ggra7578.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 106154..107041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7578.t1.exon1Ggra7578.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 106154..107041 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7578.t1.stop1Ggra7578.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 107039..107041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7578.t1Ggra7578.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 106154..107041 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7578.t1 ID=Ggra7578.t1|Name=Ggra7578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MQCFLIPVLPTRASNQSIPNLVTRRPPWRTLHSTRASNTPSSDSPPPGPV
YLIGTGPAKPDLLTQSALKKLCQADVILYDRLVSPDLLALASPTARQICV
GKARGIGTGSQPAIETLLAEYARLGKTVVRLKGGDPAIFGRLGSELSYLR
AQSIPVSIEPGITTASAVAATLGFPLTQKNVAQGVCFVTAHEDIDWISGS
MLRNVTLVVYMGLQNLGPLLYRLRYTGACDSVAAVAVHAATTKHQLVVWG
TIDTLTERVTAAALSSPTLIVIGNVVRLASQWPQEFDSAITSLQP*
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spliced messenger RNA

>Ggra7578.t1 ID=Ggra7578.t1|Name=Ggra7578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000866_pilon:106154..107041+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTGCTTTCTCATCCCCGTCCTGCCTACACGTGCATCCAACCAATC
AATCCCAAACCTTGTCACCCGTCGTCCGCCATGGCGCACACTGCATTCAA
CCCGCGCTTCAAACACACCCTCGTCCGACTCTCCTCCCCCGGGCCCTGTT
TACCTCATCGGCACAGGGCCGGCGAAACCCGATCTTCTCACACAAAGCGC
CCTCAAAAAGCTCTGCCAAGCGGACGTCATTCTCTACGATCGTCTTGTGA
GCCCCGATTTGCTAGCGCTTGCCTCGCCGACCGCACGTCAAATATGCGTT
GGAAAAGCACGAGGCATTGGCACAGGTAGTCAACCCGCCATTGAAACGCT
GCTCGCCGAATACGCTCGACTCGGCAAAACAGTCGTCCGCCTCAAGGGCG
GTGACCCGGCAATCTTCGGCCGTCTTGGGTCCGAGCTTTCATATCTGCGA
GCCCAGTCGATTCCAGTCAGTATCGAACCTGGTATCACCACTGCGTCGGC
CGTAGCCGCTACTCTGGGTTTTCCGCTCACCCAGAAGAATGTGGCACAGG
GTGTGTGCTTCGTAACAGCCCATGAAGATATAGATTGGATTTCCGGCTCG
ATGCTGCGTAATGTCACACTGGTTGTTTACATGGGACTGCAGAACCTGGG
TCCCTTGTTGTACCGACTGCGGTATACTGGGGCGTGCGATAGCGTAGCCG
CAGTGGCTGTGCATGCAGCCACTACGAAACATCAGTTAGTGGTGTGGGGG
ACTATTGACACCTTGACTGAGAGAGTGACAGCCGCAGCTCTCTCCAGTCC
GACATTAATAGTAATTGGAAACGTTGTGCGCTTAGCTTCTCAATGGCCAC
AAGAGTTCGATTCTGCCATCACGAGTTTACAACCATGA
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protein sequence of Ggra7578.t1

>Ggra7578.t1 ID=Ggra7578.t1|Name=Ggra7578.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MQCFLIPVLPTRASNQSIPNLVTRRPPWRTLHSTRASNTPSSDSPPPGPV
YLIGTGPAKPDLLTQSALKKLCQADVILYDRLVSPDLLALASPTARQICV
GKARGIGTGSQPAIETLLAEYARLGKTVVRLKGGDPAIFGRLGSELSYLR
AQSIPVSIEPGITTASAVAATLGFPLTQKNVAQGVCFVTAHEDIDWISGS
MLRNVTLVVYMGLQNLGPLLYRLRYTGACDSVAAVAVHAATTKHQLVVWG
TIDTLTERVTAAALSSPTLIVIGNVVRLASQWPQEFDSAITSLQP*
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mRNA from alignment at tig00000866_pilon:106154..107041+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7578.t1 ID=Ggra7578.t1|Name=Ggra7578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000866_pilon:106154..107041+ (Gracilaria gracilis GNS1m male)
ATGCAGTGCTTTCTCATCCCCGTCCTGCCTACACGTGCATCCAACCAATC
AATCCCAAACCTTGTCACCCGTCGTCCGCCATGGCGCACACTGCATTCAA
CCCGCGCTTCAAACACACCCTCGTCCGACTCTCCTCCCCCGGGCCCTGTT
TACCTCATCGGCACAGGGCCGGCGAAACCCGATCTTCTCACACAAAGCGC
CCTCAAAAAGCTCTGCCAAGCGGACGTCATTCTCTACGATCGTCTTGTGA
GCCCCGATTTGCTAGCGCTTGCCTCGCCGACCGCACGTCAAATATGCGTT
GGAAAAGCACGAGGCATTGGCACAGGTAGTCAACCCGCCATTGAAACGCT
GCTCGCCGAATACGCTCGACTCGGCAAAACAGTCGTCCGCCTCAAGGGCG
GTGACCCGGCAATCTTCGGCCGTCTTGGGTCCGAGCTTTCATATCTGCGA
GCCCAGTCGATTCCAGTCAGTATCGAACCTGGTATCACCACTGCGTCGGC
CGTAGCCGCTACTCTGGGTTTTCCGCTCACCCAGAAGAATGTGGCACAGG
GTGTGTGCTTCGTAACAGCCCATGAAGATATAGATTGGATTTCCGGCTCG
ATGCTGCGTAATGTCACACTGGTTGTTTACATGGGACTGCAGAACCTGGG
TCCCTTGTTGTACCGACTGCGGTATACTGGGGCGTGCGATAGCGTAGCCG
CAGTGGCTGTGCATGCAGCCACTACGAAACATCAGTTAGTGGTGTGGGGG
ACTATTGACACCTTGACTGAGAGAGTGACAGCCGCAGCTCTCTCCAGTCC
GACATTAATAGTAATTGGAAACGTTGTGCGCTTAGCTTCTCAATGGCCAC
AAGAGTTCGATTCTGCCATCACGAGTTTACAACCATGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:106154..107041+

>Ggra7578.t1 ID=Ggra7578.t1|Name=Ggra7578.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000866_pilon:106154..107041+ (Gracilaria gracilis GNS1m male)
ATGCAGTGCTTTCTCATCCCCGTCCTGCCTACACGTGCATCCAACCAATC
AATCCCAAACCTTGTCACCCGTCGTCCGCCATGGCGCACACTGCATTCAA
CCCGCGCTTCAAACACACCCTCGTCCGACTCTCCTCCCCCGGGCCCTGTT
TACCTCATCGGCACAGGGCCGGCGAAACCCGATCTTCTCACACAAAGCGC
CCTCAAAAAGCTCTGCCAAGCGGACGTCATTCTCTACGATCGTCTTGTGA
GCCCCGATTTGCTAGCGCTTGCCTCGCCGACCGCACGTCAAATATGCGTT
GGAAAAGCACGAGGCATTGGCACAGGTAGTCAACCCGCCATTGAAACGCT
GCTCGCCGAATACGCTCGACTCGGCAAAACAGTCGTCCGCCTCAAGGGCG
GTGACCCGGCAATCTTCGGCCGTCTTGGGTCCGAGCTTTCATATCTGCGA
GCCCAGTCGATTCCAGTCAGTATCGAACCTGGTATCACCACTGCGTCGGC
CGTAGCCGCTACTCTGGGTTTTCCGCTCACCCAGAAGAATGTGGCACAGG
GTGTGTGCTTCGTAACAGCCCATGAAGATATAGATTGGATTTCCGGCTCG
ATGCTGCGTAATGTCACACTGGTTGTTTACATGGGACTGCAGAACCTGGG
TCCCTTGTTGTACCGACTGCGGTATACTGGGGCGTGCGATAGCGTAGCCG
CAGTGGCTGTGCATGCAGCCACTACGAAACATCAGTTAGTGGTGTGGGGG
ACTATTGACACCTTGACTGAGAGAGTGACAGCCGCAGCTCTCTCCAGTCC
GACATTAATAGTAATTGGAAACGTTGTGCGCTTAGCTTCTCAATGGCCAC
AAGAGTTCGATTCTGCCATCACGAGTTTACAACCATGA
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