Ggra7573.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7573.t1
Unique NameGgra7573.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:98840..99268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708857.1
PFAMsProfilin
Max annot lvl2759|Eukaryota
KEGG koko:K05759
KEGG Pathwayko04013,ko04015,ko04810,ko05131,ko05132,map04013,map04015,map04810,map05131,map05132
GOsGO:0006996,GO:0007010,GO:0007015,GO:0008150,GO:0009653,GO:0009987,GO:0010927,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0030154,GO:0030239,GO:0031032,GO:0032502,GO:0032989,GO:0042692,GO:0044085,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0055001,GO:0055002,GO:0061061,GO:0070925,GO:0071689,GO:0071840,GO:0097435
Evalue2.28e-20
EggNOG OGsKOG1755@1|root,KOG1755@2759|Eukaryota
Descriptionsequestering of actin monomers
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7573Ggra7573Gracilaria gracilis GNS1m malegenetig00000866_pilon 98840..99268 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7573.t1.start1Ggra7573.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 98840..98842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7573.t1.CDS1Ggra7573.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 98840..99268 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7573.t1.exon1Ggra7573.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 98840..99268 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7573.t1.stop1Ggra7573.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 99266..99268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7573.t1Ggra7573.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 98840..99268 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7573.t1 ID=Ggra7573.t1|Name=Ggra7573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=143bp
MSWDPYVQTLVEAGFHHACIAGQDGHIWGTTPGFKMQSKEIIRLHSVLVD
DTEAIQAIKQSGFTLCMMPYALNRLEDSEDDFRMLVARCKKAGKPARGAI
VAKTAKSIIIGIHDPVYSDGQSFGRAKVAVFQLAETLIAMNF*
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spliced messenger RNA

>Ggra7573.t1 ID=Ggra7573.t1|Name=Ggra7573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000866_pilon:98840..99268+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTGGGACCCTTACGTACAGACGCTTGTGGAAGCCGGCTTTCATCA
TGCGTGCATAGCGGGACAAGACGGCCACATCTGGGGCACAACTCCTGGTT
TCAAGATGCAATCCAAAGAAATCATTCGCCTTCACTCCGTTCTTGTGGAT
GATACCGAAGCTATACAGGCCATAAAACAATCTGGTTTCACACTGTGTAT
GATGCCATACGCGCTCAACAGACTTGAGGATTCAGAAGATGATTTCAGAA
TGCTTGTTGCACGTTGCAAGAAAGCGGGTAAACCAGCACGTGGTGCGATT
GTGGCAAAGACCGCAAAGAGTATCATTATCGGCATCCATGATCCTGTGTA
TAGCGATGGTCAGTCTTTTGGTCGTGCAAAAGTGGCTGTATTTCAACTGG
CCGAGACTTTGATTGCAATGAATTTCTAG
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protein sequence of Ggra7573.t1

>Ggra7573.t1 ID=Ggra7573.t1|Name=Ggra7573.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=143bp
MSWDPYVQTLVEAGFHHACIAGQDGHIWGTTPGFKMQSKEIIRLHSVLVD
DTEAIQAIKQSGFTLCMMPYALNRLEDSEDDFRMLVARCKKAGKPARGAI
VAKTAKSIIIGIHDPVYSDGQSFGRAKVAVFQLAETLIAMNF*
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mRNA from alignment at tig00000866_pilon:98840..99268+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7573.t1 ID=Ggra7573.t1|Name=Ggra7573.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp|location=Sequence derived from alignment at tig00000866_pilon:98840..99268+ (Gracilaria gracilis GNS1m male)
ATGAGTTGGGACCCTTACGTACAGACGCTTGTGGAAGCCGGCTTTCATCA
TGCGTGCATAGCGGGACAAGACGGCCACATCTGGGGCACAACTCCTGGTT
TCAAGATGCAATCCAAAGAAATCATTCGCCTTCACTCCGTTCTTGTGGAT
GATACCGAAGCTATACAGGCCATAAAACAATCTGGTTTCACACTGTGTAT
GATGCCATACGCGCTCAACAGACTTGAGGATTCAGAAGATGATTTCAGAA
TGCTTGTTGCACGTTGCAAGAAAGCGGGTAAACCAGCACGTGGTGCGATT
GTGGCAAAGACCGCAAAGAGTATCATTATCGGCATCCATGATCCTGTGTA
TAGCGATGGTCAGTCTTTTGGTCGTGCAAAAGTGGCTGTATTTCAACTGG
CCGAGACTTTGATTGCAATGAATTTCTAG
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Coding sequence (CDS) from alignment at tig00000866_pilon:98840..99268+

>Ggra7573.t1 ID=Ggra7573.t1|Name=Ggra7573.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=429bp|location=Sequence derived from alignment at tig00000866_pilon:98840..99268+ (Gracilaria gracilis GNS1m male)
ATGAGTTGGGACCCTTACGTACAGACGCTTGTGGAAGCCGGCTTTCATCA
TGCGTGCATAGCGGGACAAGACGGCCACATCTGGGGCACAACTCCTGGTT
TCAAGATGCAATCCAAAGAAATCATTCGCCTTCACTCCGTTCTTGTGGAT
GATACCGAAGCTATACAGGCCATAAAACAATCTGGTTTCACACTGTGTAT
GATGCCATACGCGCTCAACAGACTTGAGGATTCAGAAGATGATTTCAGAA
TGCTTGTTGCACGTTGCAAGAAAGCGGGTAAACCAGCACGTGGTGCGATT
GTGGCAAAGACCGCAAAGAGTATCATTATCGGCATCCATGATCCTGTGTA
TAGCGATGGTCAGTCTTTTGGTCGTGCAAAAGTGGCTGTATTTCAACTGG
CCGAGACTTTGATTGCAATGAATTTCTAG
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