Ggra757.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra757.t1
Unique NameGgra757.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length229
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000164_piloncontigtig00000164_pilon:272335..278766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra757Ggra757Gracilaria gracilis GNS1m malegenetig00000164_pilon 272335..278766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra757.t1Ggra757.t1Gracilaria gracilis GNS1m malepolypeptidetig00000164_pilon 272335..278766 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra757.t1.stop1Ggra757.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000164_pilon 272335..272337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra757.t1.CDS1Ggra757.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000164_pilon 272335..272353 -
Ggra757.t1.CDS2Ggra757.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000164_pilon 272439..272447 -
Ggra757.t1.CDS3Ggra757.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000164_pilon 273382..273397 -
Ggra757.t1.CDS4Ggra757.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000164_pilon 273590..273605 -
Ggra757.t1.CDS5Ggra757.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000164_pilon 278140..278766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra757.t1.exon1Ggra757.t1.exon1Gracilaria gracilis GNS1m maleexontig00000164_pilon 272335..272353 -
Ggra757.t1.exon2Ggra757.t1.exon2Gracilaria gracilis GNS1m maleexontig00000164_pilon 272439..272447 -
Ggra757.t1.exon3Ggra757.t1.exon3Gracilaria gracilis GNS1m maleexontig00000164_pilon 273382..273397 -
Ggra757.t1.exon4Ggra757.t1.exon4Gracilaria gracilis GNS1m maleexontig00000164_pilon 273590..273605 -
Ggra757.t1.exon5Ggra757.t1.exon5Gracilaria gracilis GNS1m maleexontig00000164_pilon 278140..278766 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra757.t1.intron1Ggra757.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000164_pilon 272354..272438 -
Ggra757.t1.intron2Ggra757.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000164_pilon 272448..273381 -
Ggra757.t1.intron3Ggra757.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000164_pilon 273398..273589 -
Ggra757.t1.intron4Ggra757.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000164_pilon 273606..278139 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra757.t1.start1Ggra757.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000164_pilon 278764..278766 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra757.t1 ID=Ggra757.t1|Name=Ggra757.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=229bp
MPPAHQCSAHAISTLSRSALLTTRRTLRDLLRRRTSRRLSISSSAACDAS
SAYCPRCRAAPRLHHRYDLTKNAHTNTELAPMMSTMQTSSHCHRVCLRWN
AIAVPINAVTTYTLPAAEQKNAFCVSQRATDDDSATDASNHVNNDRHCCA
VCCVAHENTSVASSTPITNSASATLNTSHAVPHLRRSRLPRARMSCPMCA
QIPIDANSPLDSGEGNASTYPERSKKIC*
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spliced messenger RNA

>Ggra757.t1 ID=Ggra757.t1|Name=Ggra757.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=687bp|location=Sequence derived from alignment at tig00000164_pilon:272335..278766- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACCTGCTCATCAGTGCAGTGCTCACGCCATCTCCACGCTGAGCAG
GTCCGCGCTGCTCACCACGCGGCGCACGCTGCGCGACTTGTTGAGGCGGC
GCACGTCGCGGCGGCTCAGCATCAGCAGCAGCGCCGCCTGCGACGCGTCG
TCCGCGTACTGCCCGCGCTGCCGCGCTGCACCACGCCTGCACCACCGGTA
CGACTTGACGAAAAACGCGCACACGAACACCGAGCTGGCGCCGATGATGA
GCACCATGCAAACGAGCAGCCACTGCCACCGCGTCTGCTTGCGGTGGAAC
GCCATCGCCGTGCCCATCAACGCCGTCACCACGTACACGCTGCCCGCCGC
CGAGCAGAAAAACGCCTTCTGCGTCTCGCAGCGCGCCACGGACGACGACA
GTGCCACCGACGCGTCGAACCACGTGAACAACGACCGCCACTGCTGCGCC
GTGTGCTGCGTCGCCCACGAGAACACCAGCGTTGCCAGTTCCACCCCGAT
CACGAACAGCGCCAGCGCCACCTTGAACACCAGCCACGCTGTGCCCCACT
TGCGTCGCTCGCGTCTGCCGCGCGCGCGCATGTCGTGTCCCATGTGCGCC
CAGATCCCAATCGACGCGAACAGCCCGCTCGATAGTGGGGAAGGTAATGC
TTCCACATATCCTGAGCGCAGCAAGAAGATTTGCTAG
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protein sequence of Ggra757.t1

>Ggra757.t1 ID=Ggra757.t1|Name=Ggra757.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=229bp
MPPAHQCSAHAISTLSRSALLTTRRTLRDLLRRRTSRRLSISSSAACDAS
SAYCPRCRAAPRLHHRYDLTKNAHTNTELAPMMSTMQTSSHCHRVCLRWN
AIAVPINAVTTYTLPAAEQKNAFCVSQRATDDDSATDASNHVNNDRHCCA
VCCVAHENTSVASSTPITNSASATLNTSHAVPHLRRSRLPRARMSCPMCA
QIPIDANSPLDSGEGNASTYPERSKKIC*
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mRNA from alignment at tig00000164_pilon:272335..278766-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra757.t1 ID=Ggra757.t1|Name=Ggra757.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=6432bp|location=Sequence derived from alignment at tig00000164_pilon:272335..278766- (Gracilaria gracilis GNS1m male)
ATGCCACCTGCTCATCAGTGCAGTGCTCACGCCATCTCCACGCTGAGCAG
GTCCGCGCTGCTCACCACGCGGCGCACGCTGCGCGACTTGTTGAGGCGGC
GCACGTCGCGGCGGCTCAGCATCAGCAGCAGCGCCGCCTGCGACGCGTCG
TCCGCGTACTGCCCGCGCTGCCGCGCTGCACCACGCCTGCACCACCGGTA
CGACTTGACGAAAAACGCGCACACGAACACCGAGCTGGCGCCGATGATGA
GCACCATGCAAACGAGCAGCCACTGCCACCGCGTCTGCTTGCGGTGGAAC
GCCATCGCCGTGCCCATCAACGCCGTCACCACGTACACGCTGCCCGCCGC
CGAGCAGAAAAACGCCTTCTGCGTCTCGCAGCGCGCCACGGACGACGACA
GTGCCACCGACGCGTCGAACCACGTGAACAACGACCGCCACTGCTGCGCC
GTGTGCTGCGTCGCCCACGAGAACACCAGCGTTGCCAGTTCCACCCCGAT
CACGAACAGCGCCAGCGCCACCTTGAACACCAGCCACGCTGTGCCCCACT
TGCGTCGCTCGCGTCTGCCGCGCGCGCGCATGTCGTGTCCCATGTGCGCC
CAGATCCCAATCGACGCGAACAGCCCGGTGAGTCCGGCCCCAACCGCCAG
AAACGCGTCCGAAGACGATGGTTCCTCCGGTCGTGCCCGTAGGAACGAGT
CCTCGTTGCGCCCGATTGCTAGCTGATCTTGCTGCGCTCCCATCCAATCC
GCGCTTCTTTGCGCGTAGTCGAACAGCTTTCCACACTCTTCTCCATCTCC
GCTTTCCACCACTAGCTCATCTTTCAACTTCAAGTCACCCACGCTGTTGT
TTCCAAACACGTAAAACTCATCCGTCGATGACGTTGCCGCTCTGTCTTTA
AACTCCTCAATTATCTGTTCAAAGCTCATATTCGGTAGTGAGTCAACGTC
CGTCCGCGATATGTCCCGAACGTACCTTCGTCTCCCAACCGTGTTCCAAA
ACTTGTTCACCCCAAGCCGTACCACAAACTCATTCGACCCCGGAATGCCA
TCAACGTCATCCACCTCAATTTCCTGCAGCCGAAGTAGCTCCGTGTGGCA
ATCCCTCCACTTGCCGTCTATTCTAGGATATGTGCACACCACTTGTTCTC
GCCCCTCCACTGGAATAATACGTCTCGGCTGCAGAACGATAGCCTCCCGG
CAGCCCTCATCCAAACAGCGACAAGCAACAAGCACTTGCGTCGAGTGTCC
CTGAATTTTTCTGTCTTCGTCCGCAAACTTGTAGTGCATCTCTCCGACAA
GTCCCGGGCTGTTGTGCGCCAGCGTGCATCGTTTTTCACTCGACGGCGAG
CATCGCGCAGTGCTGTTCAACACGTTGCTGATCGCCCGTTTGAAAGTGAC
AGTCACAGATGAGTCGCGACGCGTGCGATGCACATCGTACGGCCTGTCCG
GGCCACGTGTTGTGAGGCGCACCGCTACACTCTGTCTCCATCTCTCCGAT
TCGTCCAGTTGCGTAACGAAATGATGCGCCGTGCATGATCGCCACAGCAT
GACCAAGACAGAGACTGGGATGAATGCAGAATGCGGTTTCATGGTCGTGT
ATGTTCCTCGTCGGACAAGTAACGGGGGCTCGTGCGGAACGATATTCAAC
ACTACAACGGGTACCAAGGGTAAAGTTAGATATGGTACGAACGGTTCGCG
TCGAGCTTGGGCCGAGTGGGCCACTTGTATCTACCAAACAAGTGAATGGC
GAATTGTGCGACGCAATGCTGTATTTGCAATTGCATTGTAGGATAGAACG
GAATTTCCATGAGGTTATAGAGACGGTGTTTCAGCAACACGGTTGGGTTG
CCTTTTTTCGTTTCCCAACGGGGAACGATAGATGGGCTTGATACTGTAAT
CAGGGTAGATGCCAAACGCTGCCAACATAGCGCATGCCTCCTCCACGAGG
TTGTGAATTGCAGCTTTTCGATGGCTGTAGCTGTAACATGGTGTGTGGTA
TTGATTATTGGCAGCGGCTGCTGCGACGAGAGGAATTTGTGTACGTAACC
AGTGGTTGAGCATTGTTTTCAGAATACAGACGGTGATGGAAAGAGTTGGG
CGTGCAGCGCTATGCTTCTCGCTGTGGCGTACTGCGGAAACAGTGGCGAG
TGCAGTGACAAGTCGTGTAGATACCAAGATACCTACCGGAGACAAATCAT
TTGCATGCAATATTTGCGTTGAAGCTTGTTTCATTGTTGTCGTATTGTGG
GAACAATAATGACAAGAACTTGTGCCATGGGAAGCAGTAGATAGTAGGTG
CTGATGGGATTGGATAGCGGTGGCATGTTGAGAGTTGGAACTGCTTTTCG
AAGCTATGGCGTTCTGATTATTTTAGAAGCACCAAAGAAGATTCGTATAG
ATACTGTACGTATATGCATATCTTAGCTAAGATTTACACATGTATCGAGA
GTTGTGATGTGTGGTATGACATGAAGATAAGAACGGGTAACTCTATGGGC
GACGTGATGCTTTCCGAATGCTTTCCGAATGCTTATGGACAACACACCAC
GTGCACACGTGGTACACAAACACACACACGCCACGTGTGGCTGCTGGGCA
CGGAATCCGTACTTCAAGTTGCATGCGTGGCACGGATGCAATTCGGTGAG
TTATCTTAGCACGAAACGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAAGCAGAGCAGCGCCAGCGCGTGGCGAACATACGCGGGCGCCATG
AACTCGTCGCTAGCGCTGAGCGCGCACGCCGTGGTGCTGGCGGGCGGCGC
CGGCAGCCGAATGGGCGCGCTGCCGAGCGACGCCACGCCCAAGGCGCTGC
TGCCGGTGGCCAACCGCCCCATGCTGTTCTACGCGCTCTTCTCGCTGGCG
CGCGCCGCCGTGCCGTCCGCCACCGTCTTCGTGCGCGCGCCGCATCTGCA
GCGCGTCCGCGCCTACGTCGCCGACGTGTTCGCGGCCGATCGCCTCGTGC
GCGCGCTGCCCACCGCGCTCAAGTGCGACGTGCGCGTCTGCGCCCCCAAC
AGCGGCACCGCTGATGCTGTGCGCTGCATGGCGCACGCCGATGCGCATGC
CACTAGTCTTATTGTGCTTAGCTCCGATTGTGTCGCCGATATCGACCTTT
CGGCCGTGCTTCAACACCATTGTGACTCGCTTTCCACCGCCACCGTCGTG
CTTGTCCGACAGCCATGTGGCCCTCTCCCACAAAACACAAAGCACAAGCA
CAAGTCGTCGAAGAACACATCGTCAACTCCCCCGTACACCGTCACCAACT
ACGCCCTCTTGTCCGATCGCCACCGCCTACTCGGCCTCATCACCCCGTCC
GATCTCTCGTCGACGTCGAACAAGCTTGTTGTTCGTGCCGCCCTCACCAA
TCGCTACCACTCCATCAAACTGTGCTCCGATCTGTTTGACACCCATGTGT
ACGTGCTTGACAAGCGCACCGTTCGCAACGCTCTGCGCCTGTTTCCGGCC
ATATCCTCCGTGCGTTTCGACCTTATCCCCTACCTGGCCAGACGTCAGCA
CACGCTGCAGCGCACCGCGGACACCTTGGACTGGCCGTATCCTGGCGAGC
AACTTGTTGTCAACGCCCTGCTTTTGGACGCCGCCACCACGTACGCGAAG
AGAGCCAATACCGTTTCCCATTTTCTCCACGCCAATCTTCGAGTTGCCGC
TGGCTGTCTCAACCCATTTCTTGAGCGCACCGACAATGTACCTACTGACA
AGCCGAAGAAAGGAAAGAAGCTTGACAGAAAGTTGCCATTCGTCACATGT
GGTGAAAAGGTTTCCGTGTCGCCCGAGTCCAACGTGGCGGACAATGTTAC
CGCAGGTGACCGTACTTCGGTCAAGAAAAGCGTGGTCGGTCCGAATTGCA
AGCTTGGTTCCAACGTCAAGATCAACGGCTGTGTGTTGATGGCCGGTGTC
ACGCTTGAAGACGGAGTTAATCTTTCGTCGTGTATTGTGTGCGAACACGC
TGTCGTTCAAACTGGCTCTGTGCTCAAAGAATGTCAGGTTGCGTCAGGAA
TTACTGTCCCGTCAAACTCTGAAGCTAGTGGTAAACAATACACAGGCGCT
CAGGAAGGTGTGTATGGGCTGGGCGATATTGAGTTCTTTAAATGATTCCC
AAATGCTGCTCAACTACCCTTGCTTCACTCTTTTGAAAGTGTTCACGTAT
CCTTTGGGATGTACAACTCCTGTCGTTCTTTACCTCAACCTCTTTCAGAG
CTATGATGAACCTAATATGCAAAGTAGCAAGAGTGCTGTCCGACGCATCA
TACACCCTGGTCTAGTCAGCCAAACTGGAACACGGTTTAGAACATGAATA
CTGAGCACCAGACATTTTATGGGCCTTGGATCAGGGCAGCGATGTCTTCT
CAGGGCTGTTGACCGAGTGTTTCAATTCTTATTGTTCGGAAAGCTTGCGA
ATTAACGACGTGCTTTGCACTCAATTGAGCCACTTTCTCATGTCCCTCCA
CTGAGGGCATCCATTGTATAGAAGGTTACCAATAGGTTCTATGGCTACGC
CGAGACGTACTGGCAATCGAAATACTTCCAACATGGGATGTGCCACCCAA
TAAGGAATAGCATTGGTATATGTCGATGCGACGATCCTTCCGACGACAAT
ATCACCTTGCATGGTATGAGGAGCATACAACCCAGTTCGGTTAACCTTTG
AAACCACCGACACTATCGAAGGTCCGTCAAGGGTACGAAGTGTATCACCA
ACTTTCACGTTTTGAGCGATAACTAGCCGGCCGTTTGCGTAGATGTAGTG
CTCTGGGGAAAGCTCAATAGTATGGTTCTGTGCGGACTCTAAACGAACAA
AGAGATGCGTCCCCACTGGTTGCTTGTGCGAAAACATATACACCGCGCTT
GACTCTGATTCACCAGACATGATGGCATGACCAGCCTGAAGCTCATGCAT
TTGGATTTTCTTCCCGTTAGATAAATGAACGGTGGCGGTTCTCGGGAAGC
AACCGTCCATGTCGGGGAAGCCCGTAATTTCGGAGAGGTTTGTCAGGCTC
GTCTCGAGATGCATACTTGCTTCGGGGCTCGCCCTGCCTTCTAGGGTTTC
CATTTCCGGCGCAGCTGTGCTTTCAGAAGATTCTGATACGAGGCCAACGT
TGAACTCGAAGCTCGATAGTGGGGAAGGTAATGCTTCCACATAGTTCGGG
CCTGGTCCATCCGTGAACGGTTCCGGGAGGTCTGTTGGGCTCGTCTCGGG
ATGCATACTTGCTTCGGGGCTCGCCCTGCCTTCTAGGGTTTCCATTTCCG
GCGCAGCTGTGCTTTCAGAAGATTGCGATACGGGGCCAATGTTGAAATCG
AAGCTCGATAGTGGGGAAGGTAATGCTTCCACATAGTTCGGGCCTGGTCC
ATCCGTGAACAGTTCCAAATCAATCGGATCGGGTTCGACAGTATTTAATG
GATTGTAGCTTGACGGGTATGTCATGGGCGGCGACGGTAGAACTGATGGT
TCGACTATGCTTTCTTGTGATTGTAAGCCTGGTGCCCTTTCATGCAATTG
CGTCGTGAGTTCTGAACTGTAGCCAGCAGTTTCGTGAACAACAGGTGTGG
AAGCAACGGCATCTTCAGCATTCCAAGCTAGTGAGAACCATGGAGTCGCT
TCAGGAGAACCTTGGAAGTCCGTTCCCTGTGTCACTGGTGGACTCTCTTC
TTCTAACACCTCGAAGGACGACAAGGGATAATTAGAGGGCGTAATCGTGC
GGCCCAGAGCTGTTGTAGGGAGTACCTGAGGGCCGACCCCCAGGGAATGT
GACAACGGGGCAATAGATGATAGTTCAGCAAAAGAAGTTCCTTCATCCTC
TCCAGGACCGTCAACCTCTAGAGTTTGCGAAGGGGGACTGCTGAGTGGTA
TCAATTCCCCTTCTTCGGGAGAAGCCATGGGTTGTTCTGAGGGCTCCAAA
CAGGGCTCTTCTCGATCATGGCTTTCTGGGAATTCCTCAGGGTTCAAGAT
ACCAGGAAACAAAACTCTGCTAACAACGTGAATATATCCGTTTAAGGTGC
AGATATCCAACATTCCCTCTACAAGATCCGCATCTGGAAGCTCGGGGTTT
TGGTCAATCAGTTGAAGTCCAGTGCGCTCTAGGGGCAGTCCTGAGTCCCA
GGTGGCAAACATTGTTTTGTTTCGGATCTCGTTTGAGTTCATGCTGGGTG
CAACGATATGGTAAAGGGGCATGTTGAAGATATATTCGATGGGGTTTTCG
TATCTTTTTGAAAGGTAGGAGACAAGGTATTGGTACCCTTCGTACTCTTC
ACTTCCTTCGTAACCCAAGTCCTGAGCGGTACGTAGAATAGCATCGTCGT
TGGGAGCGAAGAAAGTTATGCCACCTGGGGTGCTGATATTCAAAATCCCT
TCGCTATTGCCAGCAGCAAGAAGATTTGCTAG
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Coding sequence (CDS) from alignment at tig00000164_pilon:272335..278766-

>Ggra757.t1 ID=Ggra757.t1|Name=Ggra757.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=687bp|location=Sequence derived from alignment at tig00000164_pilon:272335..278766- (Gracilaria gracilis GNS1m male)
ATGCCACCTGCTCATCAGTGCAGTGCTCACGCCATCTCCACGCTGAGCAG
GTCCGCGCTGCTCACCACGCGGCGCACGCTGCGCGACTTGTTGAGGCGGC
GCACGTCGCGGCGGCTCAGCATCAGCAGCAGCGCCGCCTGCGACGCGTCG
TCCGCGTACTGCCCGCGCTGCCGCGCTGCACCACGCCTGCACCACCGGTA
CGACTTGACGAAAAACGCGCACACGAACACCGAGCTGGCGCCGATGATGA
GCACCATGCAAACGAGCAGCCACTGCCACCGCGTCTGCTTGCGGTGGAAC
GCCATCGCCGTGCCCATCAACGCCGTCACCACGTACACGCTGCCCGCCGC
CGAGCAGAAAAACGCCTTCTGCGTCTCGCAGCGCGCCACGGACGACGACA
GTGCCACCGACGCGTCGAACCACGTGAACAACGACCGCCACTGCTGCGCC
GTGTGCTGCGTCGCCCACGAGAACACCAGCGTTGCCAGTTCCACCCCGAT
CACGAACAGCGCCAGCGCCACCTTGAACACCAGCCACGCTGTGCCCCACT
TGCGTCGCTCGCGTCTGCCGCGCGCGCGCATGTCGTGTCCCATGTGCGCC
CAGATCCCAATCGACGCGAACAGCCCGCTCGATAGTGGGGAAGGTAATGC
TTCCACATATCCTGAGCGCAGCAAGAAGATTTGCTAG
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