Ggra7566.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7566.t1
Unique Name	Ggra7566.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	812

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:84833..87268 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707377.1
PFAMs	Chorein_N,VPS13,VPS13_C,Vps62
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19526
Evalue	4.96e-29
EggNOG OGs	COG5043@1\|root,KOG1809@2759\|Eukaryota
Description	regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
COG category	U
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7566	Ggra7566	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 84833..87268 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7566.t1.stop1	Ggra7566.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 84833..84835 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7566.t1.CDS1	Ggra7566.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 84833..87268 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7566.t1.exon1	Ggra7566.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 84833..87268 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7566.t1.start1	Ggra7566.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 87266..87268 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7566.t1	Ggra7566.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 84833..87268 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:84833..87268-
coding sequence from alignment at tig00000866_pilon:84833..87268-

mRNA sequence

>Ggra7566.t1 ID=Ggra7566.t1|Name=Ggra7566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=812bp
MLQNTLSALLQSVASRYAELSPSDVGIGLRGGRLVVDDVQLRADTFNGPH
IPFHVHEGRAGRLRVNVPWSALTSAPVQVYLENVHLIAGPKHTYPENARA
ARKKRSARRLSASSAEWHQTNVGRLLFNVSVEMYGLKVEYRDDHCVGIIS
IASLNAFSAGPDWQRRFVSLTSGLDPSRPYATAVTMRKLVRLGGVHWVMI
PRTKPTPDQPDSEQLPPEAEATSPRFQQRRMDLQSYESQAPILDGIPISV
KVLLHSGTAQIDQQFTPGLHAEIHVDIEDPSINLTARQIKWIDHIVKAGF
GLGASRDPSRSAPSTVPTPKRRRIPPHNDAKDSAAPTSDGLSEDETDRSE
ADESVSASDDMSISSRLEKELAHQIQTSRSNSSENSSKKRSRQYSEQSQQ
DDDDEVDEDYEEDELIIVQDPNISDAFEEPPGTGGLRSFWQAIVSENADD
TVDDAAIALGLANGHIQEEEDVDIIPEMEEDDEAEHHYAREAVNAAAEAG
GLTMQLVLRTPDHEAWEKVKKLEEELQEEKQLRTRLEDVERILKESEQRI
QDSEAMAQKLRDKNEALVKELQDLEQMTSKAGKNKDAMIRQMEGALAKAE
RNLQAMLQEKFEKDAGSVITKSIQVNTYVEEGDQRPISKDSEQVAGNQAL
PSSGPTKLPGEDVEDKEQPGLQDPGKSEEEKDMLTQTTLDAVNESTEEKK
EKEVPLLRESQGKDQAAKPELVSKEPSKETPSTAPNDTELNTSSSAPDSV
QEPGLQEIQLHSDRYGQLSMDSPSVSITKLIADMSTKVDVADSSRNKHLE
AAMSSEGLTLI*

spliced messenger RNA

>Ggra7566.t1 ID=Ggra7566.t1|Name=Ggra7566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2436bp|location=Sequence derived from alignment at tig00000866_pilon:84833..87268- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGAACACCCTCTCCGCGTTGCTCCAGTCCGTCGCCAGTCGCTA
CGCGGAGCTGTCGCCGTCGGATGTAGGCATTGGTCTTCGTGGTGGTCGCC
TTGTTGTCGACGACGTTCAGCTGCGTGCGGATACGTTCAATGGTCCGCAC
ATCCCCTTCCACGTCCATGAGGGCCGTGCCGGCCGACTTCGCGTCAACGT
GCCATGGTCTGCACTCACCTCCGCCCCCGTCCAGGTTTACCTGGAGAACG
TCCATCTAATCGCCGGACCCAAGCACACGTATCCCGAAAACGCTCGCGCC
GCGCGCAAGAAACGTTCCGCCAGACGATTGTCTGCGTCCTCTGCAGAGTG
GCATCAGACCAATGTGGGTCGCTTGCTGTTCAATGTTTCCGTCGAGATGT
ACGGGCTCAAGGTCGAGTACCGGGACGATCACTGCGTCGGCATCATTTCA
ATTGCATCGCTGAATGCCTTCAGCGCCGGTCCCGACTGGCAACGCCGCTT
TGTCTCCCTTACGTCCGGCCTTGATCCAAGCAGACCGTACGCCACAGCGG
TGACCATGCGAAAGCTCGTCCGTCTCGGCGGCGTTCACTGGGTCATGATT
CCTCGAACGAAGCCAACGCCGGATCAGCCCGACAGCGAGCAGCTTCCGCC
TGAAGCGGAAGCCACATCACCTAGGTTTCAGCAGAGGCGTATGGATCTGC
AGTCCTACGAGAGCCAAGCCCCGATCCTGGACGGTATCCCCATCTCGGTC
AAAGTGTTGTTGCACAGCGGAACTGCTCAGATCGACCAACAGTTTACCCC
GGGATTACACGCAGAAATACATGTAGATATCGAAGATCCCAGCATTAACC
TCACGGCACGTCAAATCAAATGGATTGACCACATCGTCAAAGCCGGTTTT
GGTCTGGGTGCCAGCCGCGATCCCTCTCGTTCTGCACCCTCAACCGTTCC
AACTCCAAAACGGAGAAGAATCCCACCACACAATGATGCTAAAGATTCTG
CTGCGCCGACGAGCGACGGTCTGAGCGAAGACGAAACTGATCGCTCCGAA
GCAGACGAGTCTGTAAGCGCGAGCGACGACATGTCAATCAGTTCACGATT
GGAAAAAGAACTTGCACATCAGATACAAACATCTCGCTCAAACTCCTCAG
AAAACTCCTCGAAAAAACGTTCCAGGCAGTATTCCGAGCAGTCGCAGCAG
GACGACGATGATGAGGTCGACGAAGATTACGAGGAAGATGAGTTGATCAT
TGTACAGGATCCCAATATTTCCGATGCTTTTGAAGAGCCTCCTGGAACAG
GGGGACTCAGGTCATTCTGGCAAGCTATCGTGAGCGAAAATGCCGATGAT
ACTGTTGACGACGCTGCGATTGCTCTTGGTCTTGCCAATGGGCACATTCA
GGAAGAAGAAGACGTGGATATTATTCCAGAAATGGAAGAGGATGATGAGG
CCGAGCACCATTATGCTCGAGAGGCTGTCAACGCTGCTGCAGAGGCCGGT
GGTCTAACAATGCAACTCGTTTTGCGTACACCTGATCACGAAGCTTGGGA
AAAAGTGAAGAAGCTGGAAGAAGAACTCCAAGAAGAGAAGCAATTAAGAA
CTCGTTTGGAGGACGTCGAAAGGATTTTGAAAGAATCTGAGCAGCGTATT
CAAGATTCCGAGGCTATGGCACAAAAGCTGCGAGATAAAAATGAGGCTCT
GGTTAAGGAACTTCAAGATCTTGAACAGATGACTTCTAAAGCTGGAAAGA
ACAAAGATGCCATGATCCGCCAAATGGAGGGTGCGTTAGCCAAAGCAGAA
AGAAATCTACAAGCCATGTTGCAAGAAAAGTTCGAAAAGGATGCGGGCAG
TGTGATCACAAAGTCGATTCAAGTTAATACGTACGTGGAAGAAGGTGATC
AAAGACCAATTTCCAAAGATTCGGAGCAAGTAGCTGGCAACCAAGCATTA
CCATCTTCAGGTCCAACAAAACTACCGGGCGAAGATGTCGAAGACAAGGA
ACAGCCTGGATTGCAAGATCCAGGAAAATCTGAAGAGGAAAAGGACATGT
TGACCCAGACAACTTTGGATGCAGTAAACGAGTCTACTGAGGAGAAAAAG
GAGAAGGAGGTTCCACTGTTGAGAGAATCACAAGGAAAAGATCAGGCAGC
AAAACCTGAACTCGTCTCAAAAGAACCAAGCAAGGAAACGCCTTCCACTG
CCCCCAACGACACTGAACTGAACACTAGTAGCTCAGCTCCAGATAGCGTT
CAGGAGCCCGGACTTCAAGAGATTCAGTTGCACAGTGATAGGTATGGTCA
GCTTTCCATGGATTCACCATCCGTTTCAATTACAAAGCTAATAGCAGATA
TGAGCACCAAGGTTGATGTTGCAGACTCTTCGCGTAACAAACATCTTGAA
GCAGCCATGTCGTCGGAAGGTCTAACTCTTATATAG

protein sequence of Ggra7566.t1

>Ggra7566.t1 ID=Ggra7566.t1|Name=Ggra7566.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=812bp
MLQNTLSALLQSVASRYAELSPSDVGIGLRGGRLVVDDVQLRADTFNGPH
IPFHVHEGRAGRLRVNVPWSALTSAPVQVYLENVHLIAGPKHTYPENARA
ARKKRSARRLSASSAEWHQTNVGRLLFNVSVEMYGLKVEYRDDHCVGIIS
IASLNAFSAGPDWQRRFVSLTSGLDPSRPYATAVTMRKLVRLGGVHWVMI
PRTKPTPDQPDSEQLPPEAEATSPRFQQRRMDLQSYESQAPILDGIPISV
KVLLHSGTAQIDQQFTPGLHAEIHVDIEDPSINLTARQIKWIDHIVKAGF
GLGASRDPSRSAPSTVPTPKRRRIPPHNDAKDSAAPTSDGLSEDETDRSE
ADESVSASDDMSISSRLEKELAHQIQTSRSNSSENSSKKRSRQYSEQSQQ
DDDDEVDEDYEEDELIIVQDPNISDAFEEPPGTGGLRSFWQAIVSENADD
TVDDAAIALGLANGHIQEEEDVDIIPEMEEDDEAEHHYAREAVNAAAEAG
GLTMQLVLRTPDHEAWEKVKKLEEELQEEKQLRTRLEDVERILKESEQRI
QDSEAMAQKLRDKNEALVKELQDLEQMTSKAGKNKDAMIRQMEGALAKAE
RNLQAMLQEKFEKDAGSVITKSIQVNTYVEEGDQRPISKDSEQVAGNQAL
PSSGPTKLPGEDVEDKEQPGLQDPGKSEEEKDMLTQTTLDAVNESTEEKK
EKEVPLLRESQGKDQAAKPELVSKEPSKETPSTAPNDTELNTSSSAPDSV
QEPGLQEIQLHSDRYGQLSMDSPSVSITKLIADMSTKVDVADSSRNKHLE
AAMSSEGLTLI*

mRNA from alignment at tig00000866_pilon:84833..87268-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7566.t1 ID=Ggra7566.t1|Name=Ggra7566.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2436bp|location=Sequence derived from alignment at tig00000866_pilon:84833..87268- (Gracilaria gracilis GNS1m male)
ATGCTGCAGAACACCCTCTCCGCGTTGCTCCAGTCCGTCGCCAGTCGCTA
CGCGGAGCTGTCGCCGTCGGATGTAGGCATTGGTCTTCGTGGTGGTCGCC
TTGTTGTCGACGACGTTCAGCTGCGTGCGGATACGTTCAATGGTCCGCAC
ATCCCCTTCCACGTCCATGAGGGCCGTGCCGGCCGACTTCGCGTCAACGT
GCCATGGTCTGCACTCACCTCCGCCCCCGTCCAGGTTTACCTGGAGAACG
TCCATCTAATCGCCGGACCCAAGCACACGTATCCCGAAAACGCTCGCGCC
GCGCGCAAGAAACGTTCCGCCAGACGATTGTCTGCGTCCTCTGCAGAGTG
GCATCAGACCAATGTGGGTCGCTTGCTGTTCAATGTTTCCGTCGAGATGT
ACGGGCTCAAGGTCGAGTACCGGGACGATCACTGCGTCGGCATCATTTCA
ATTGCATCGCTGAATGCCTTCAGCGCCGGTCCCGACTGGCAACGCCGCTT
TGTCTCCCTTACGTCCGGCCTTGATCCAAGCAGACCGTACGCCACAGCGG
TGACCATGCGAAAGCTCGTCCGTCTCGGCGGCGTTCACTGGGTCATGATT
CCTCGAACGAAGCCAACGCCGGATCAGCCCGACAGCGAGCAGCTTCCGCC
TGAAGCGGAAGCCACATCACCTAGGTTTCAGCAGAGGCGTATGGATCTGC
AGTCCTACGAGAGCCAAGCCCCGATCCTGGACGGTATCCCCATCTCGGTC
AAAGTGTTGTTGCACAGCGGAACTGCTCAGATCGACCAACAGTTTACCCC
GGGATTACACGCAGAAATACATGTAGATATCGAAGATCCCAGCATTAACC
TCACGGCACGTCAAATCAAATGGATTGACCACATCGTCAAAGCCGGTTTT
GGTCTGGGTGCCAGCCGCGATCCCTCTCGTTCTGCACCCTCAACCGTTCC
AACTCCAAAACGGAGAAGAATCCCACCACACAATGATGCTAAAGATTCTG
CTGCGCCGACGAGCGACGGTCTGAGCGAAGACGAAACTGATCGCTCCGAA
GCAGACGAGTCTGTAAGCGCGAGCGACGACATGTCAATCAGTTCACGATT
GGAAAAAGAACTTGCACATCAGATACAAACATCTCGCTCAAACTCCTCAG
AAAACTCCTCGAAAAAACGTTCCAGGCAGTATTCCGAGCAGTCGCAGCAG
GACGACGATGATGAGGTCGACGAAGATTACGAGGAAGATGAGTTGATCAT
TGTACAGGATCCCAATATTTCCGATGCTTTTGAAGAGCCTCCTGGAACAG
GGGGACTCAGGTCATTCTGGCAAGCTATCGTGAGCGAAAATGCCGATGAT
ACTGTTGACGACGCTGCGATTGCTCTTGGTCTTGCCAATGGGCACATTCA
GGAAGAAGAAGACGTGGATATTATTCCAGAAATGGAAGAGGATGATGAGG
CCGAGCACCATTATGCTCGAGAGGCTGTCAACGCTGCTGCAGAGGCCGGT
GGTCTAACAATGCAACTCGTTTTGCGTACACCTGATCACGAAGCTTGGGA
AAAAGTGAAGAAGCTGGAAGAAGAACTCCAAGAAGAGAAGCAATTAAGAA
CTCGTTTGGAGGACGTCGAAAGGATTTTGAAAGAATCTGAGCAGCGTATT
CAAGATTCCGAGGCTATGGCACAAAAGCTGCGAGATAAAAATGAGGCTCT
GGTTAAGGAACTTCAAGATCTTGAACAGATGACTTCTAAAGCTGGAAAGA
ACAAAGATGCCATGATCCGCCAAATGGAGGGTGCGTTAGCCAAAGCAGAA
AGAAATCTACAAGCCATGTTGCAAGAAAAGTTCGAAAAGGATGCGGGCAG
TGTGATCACAAAGTCGATTCAAGTTAATACGTACGTGGAAGAAGGTGATC
AAAGACCAATTTCCAAAGATTCGGAGCAAGTAGCTGGCAACCAAGCATTA
CCATCTTCAGGTCCAACAAAACTACCGGGCGAAGATGTCGAAGACAAGGA
ACAGCCTGGATTGCAAGATCCAGGAAAATCTGAAGAGGAAAAGGACATGT
TGACCCAGACAACTTTGGATGCAGTAAACGAGTCTACTGAGGAGAAAAAG
GAGAAGGAGGTTCCACTGTTGAGAGAATCACAAGGAAAAGATCAGGCAGC
AAAACCTGAACTCGTCTCAAAAGAACCAAGCAAGGAAACGCCTTCCACTG
CCCCCAACGACACTGAACTGAACACTAGTAGCTCAGCTCCAGATAGCGTT
CAGGAGCCCGGACTTCAAGAGATTCAGTTGCACAGTGATAGGTATGGTCA
GCTTTCCATGGATTCACCATCCGTTTCAATTACAAAGCTAATAGCAGATA
TGAGCACCAAGGTTGATGTTGCAGACTCTTCGCGTAACAAACATCTTGAA
GCAGCCATGTCGTCGGAAGGTCTAACTCTTATATAG

Coding sequence (CDS) from alignment at tig00000866_pilon:84833..87268-

>Ggra7566.t1 ID=Ggra7566.t1|Name=Ggra7566.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2436bp|location=Sequence derived from alignment at tig00000866_pilon:84833..87268- (Gracilaria gracilis GNS1m male)
ATGCTGCAGAACACCCTCTCCGCGTTGCTCCAGTCCGTCGCCAGTCGCTA
CGCGGAGCTGTCGCCGTCGGATGTAGGCATTGGTCTTCGTGGTGGTCGCC
TTGTTGTCGACGACGTTCAGCTGCGTGCGGATACGTTCAATGGTCCGCAC
ATCCCCTTCCACGTCCATGAGGGCCGTGCCGGCCGACTTCGCGTCAACGT
GCCATGGTCTGCACTCACCTCCGCCCCCGTCCAGGTTTACCTGGAGAACG
TCCATCTAATCGCCGGACCCAAGCACACGTATCCCGAAAACGCTCGCGCC
GCGCGCAAGAAACGTTCCGCCAGACGATTGTCTGCGTCCTCTGCAGAGTG
GCATCAGACCAATGTGGGTCGCTTGCTGTTCAATGTTTCCGTCGAGATGT
ACGGGCTCAAGGTCGAGTACCGGGACGATCACTGCGTCGGCATCATTTCA
ATTGCATCGCTGAATGCCTTCAGCGCCGGTCCCGACTGGCAACGCCGCTT
TGTCTCCCTTACGTCCGGCCTTGATCCAAGCAGACCGTACGCCACAGCGG
TGACCATGCGAAAGCTCGTCCGTCTCGGCGGCGTTCACTGGGTCATGATT
CCTCGAACGAAGCCAACGCCGGATCAGCCCGACAGCGAGCAGCTTCCGCC
TGAAGCGGAAGCCACATCACCTAGGTTTCAGCAGAGGCGTATGGATCTGC
AGTCCTACGAGAGCCAAGCCCCGATCCTGGACGGTATCCCCATCTCGGTC
AAAGTGTTGTTGCACAGCGGAACTGCTCAGATCGACCAACAGTTTACCCC
GGGATTACACGCAGAAATACATGTAGATATCGAAGATCCCAGCATTAACC
TCACGGCACGTCAAATCAAATGGATTGACCACATCGTCAAAGCCGGTTTT
GGTCTGGGTGCCAGCCGCGATCCCTCTCGTTCTGCACCCTCAACCGTTCC
AACTCCAAAACGGAGAAGAATCCCACCACACAATGATGCTAAAGATTCTG
CTGCGCCGACGAGCGACGGTCTGAGCGAAGACGAAACTGATCGCTCCGAA
GCAGACGAGTCTGTAAGCGCGAGCGACGACATGTCAATCAGTTCACGATT
GGAAAAAGAACTTGCACATCAGATACAAACATCTCGCTCAAACTCCTCAG
AAAACTCCTCGAAAAAACGTTCCAGGCAGTATTCCGAGCAGTCGCAGCAG
GACGACGATGATGAGGTCGACGAAGATTACGAGGAAGATGAGTTGATCAT
TGTACAGGATCCCAATATTTCCGATGCTTTTGAAGAGCCTCCTGGAACAG
GGGGACTCAGGTCATTCTGGCAAGCTATCGTGAGCGAAAATGCCGATGAT
ACTGTTGACGACGCTGCGATTGCTCTTGGTCTTGCCAATGGGCACATTCA
GGAAGAAGAAGACGTGGATATTATTCCAGAAATGGAAGAGGATGATGAGG
CCGAGCACCATTATGCTCGAGAGGCTGTCAACGCTGCTGCAGAGGCCGGT
GGTCTAACAATGCAACTCGTTTTGCGTACACCTGATCACGAAGCTTGGGA
AAAAGTGAAGAAGCTGGAAGAAGAACTCCAAGAAGAGAAGCAATTAAGAA
CTCGTTTGGAGGACGTCGAAAGGATTTTGAAAGAATCTGAGCAGCGTATT
CAAGATTCCGAGGCTATGGCACAAAAGCTGCGAGATAAAAATGAGGCTCT
GGTTAAGGAACTTCAAGATCTTGAACAGATGACTTCTAAAGCTGGAAAGA
ACAAAGATGCCATGATCCGCCAAATGGAGGGTGCGTTAGCCAAAGCAGAA
AGAAATCTACAAGCCATGTTGCAAGAAAAGTTCGAAAAGGATGCGGGCAG
TGTGATCACAAAGTCGATTCAAGTTAATACGTACGTGGAAGAAGGTGATC
AAAGACCAATTTCCAAAGATTCGGAGCAAGTAGCTGGCAACCAAGCATTA
CCATCTTCAGGTCCAACAAAACTACCGGGCGAAGATGTCGAAGACAAGGA
ACAGCCTGGATTGCAAGATCCAGGAAAATCTGAAGAGGAAAAGGACATGT
TGACCCAGACAACTTTGGATGCAGTAAACGAGTCTACTGAGGAGAAAAAG
GAGAAGGAGGTTCCACTGTTGAGAGAATCACAAGGAAAAGATCAGGCAGC
AAAACCTGAACTCGTCTCAAAAGAACCAAGCAAGGAAACGCCTTCCACTG
CCCCCAACGACACTGAACTGAACACTAGTAGCTCAGCTCCAGATAGCGTT
CAGGAGCCCGGACTTCAAGAGATTCAGTTGCACAGTGATAGGTATGGTCA
GCTTTCCATGGATTCACCATCCGTTTCAATTACAAAGCTAATAGCAGATA
TGAGCACCAAGGTTGATGTTGCAGACTCTTCGCGTAACAAACATCTTGAA
GCAGCCATGTCGTCGGAAGGTCTAACTCTTATATAG