Ggra7564.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7564.t1
Unique NameGgra7564.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length746
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:78467..80704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ca01791.1.p
PFAMsDnaJ,DnaJ-X
Max annot lvl35493|Streptophyta
KEGG koko:K02974
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Evalue2.7e-52
EggNOG OGsCOG2214@1|root,KOG0691@2759|Eukaryota,37NRP@33090|Viridiplantae,3GA6Y@35493|Streptophyta,3KM4B@4447|Liliopsida,3IDHQ@38820|Poales
DescriptionX-domain of DnaJ-containing
COG categoryO
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7564Ggra7564Gracilaria gracilis GNS1m malegenetig00000866_pilon 78467..80704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7564.t1.stop1Ggra7564.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 78467..78469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7564.t1.CDS1Ggra7564.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 78467..80704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7564.t1.exon1Ggra7564.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 78467..80704 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7564.t1.start1Ggra7564.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 80702..80704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7564.t1Ggra7564.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 78467..80704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7564.t1 ID=Ggra7564.t1|Name=Ggra7564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=746bp
MADDDRARANACFRLGDWTGAIDRYSKAIELLSLAHLPPDKKLFSNRSAA
HYKLARQLREADDPDGPAILNHLNLAVQDGSKAAELDPLWPKAWCRMGVA
LIDAERFVEAKDVLEKGYRLCPDSEDIEVLYERALQLYAEFESFSVRAHS
RGIKLLQQMDFHAAVTAFTAAIKACDSENRFPTKEMYVGRCEAYYNISRT
ESSSDACEKAMELALDDAERCVRNAPTWPKSWVWKGLVLRAMGKLTEAMK
VLKKGQELCREDDEMNSLIREIDLIMLEKERYARGSRSGSSRPKRRGDVK
DLSLYDVLGVQPDASDSAIKKAYYLQAKRCHPDRHPDDPQATEKFQRLGE
AYQILSNEHTRALYDNSGMEGLESSNMERMEAGQLFDMLFGSDQFEFLVG
ELSLASLASNVDEDGNAPDESLLRSIQKQRVRKLIDELTRILQPWTGGDK
SAFIQWAYTKALCIVDSNCGPAMLYTIGQIYTRKADIHLGRDHLLGIPAM
FSSFGYSKQKFSTQMKAAGAAYKVMDKQRRMQDKVSRLEKEGRRMDEEEA
QRMAMDMVENAFDMMWKITVVDIQKTLDEVISFLLDGEDMPDDQEEIEQV
IQDLDEEGRVGVPGREVLYVPPFVSPGCTGLDLSSENSGEKGNEKGSRFT
LDSLEKGIERFFLPKKEHKEGTRVRKREDVLHARATGLRKLGKIFMQVSQ
DTSVQSVTLHGNAVPGSGSGSGSDGWSCDSTPRQSDVGDTEVRAG*
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spliced messenger RNA

>Ggra7564.t1 ID=Ggra7564.t1|Name=Ggra7564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2238bp|location=Sequence derived from alignment at tig00000866_pilon:78467..80704- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGATGATGACCGTGCCAGGGCCAATGCCTGCTTTCGCCTCGGCGA
TTGGACAGGCGCCATAGACCGCTACTCAAAGGCCATTGAACTGTTGTCCC
TCGCGCACCTTCCGCCCGATAAAAAGCTTTTCTCCAACAGATCAGCTGCC
CATTACAAGCTTGCTCGCCAATTGCGCGAAGCGGATGACCCTGATGGTCC
TGCGATTTTGAATCACCTTAACCTTGCCGTGCAGGATGGTTCTAAAGCTG
CCGAATTGGACCCGTTGTGGCCGAAGGCTTGGTGTCGCATGGGTGTTGCA
CTCATAGACGCTGAGCGTTTTGTCGAGGCCAAGGACGTTTTGGAGAAGGG
ATACCGACTTTGTCCCGACTCTGAAGATATAGAAGTGCTGTATGAACGTG
CTCTACAACTCTATGCCGAGTTTGAGTCTTTCAGCGTCCGAGCGCATAGC
CGGGGTATAAAGCTTCTGCAGCAGATGGACTTTCATGCTGCTGTCACTGC
TTTCACCGCTGCTATTAAAGCGTGCGACTCTGAGAATCGTTTCCCGACAA
AGGAGATGTATGTCGGACGTTGTGAGGCATATTATAACATTTCTCGAACT
GAATCTTCTTCAGATGCTTGTGAGAAGGCCATGGAACTTGCGCTTGATGA
TGCTGAGCGTTGCGTTCGTAATGCACCCACGTGGCCTAAAAGCTGGGTCT
GGAAAGGCCTTGTACTACGCGCCATGGGTAAGTTGACTGAAGCCATGAAG
GTATTGAAGAAGGGACAAGAGCTCTGCAGAGAAGACGACGAAATGAACTC
TCTCATTCGCGAAATTGACCTCATCATGTTAGAGAAAGAGCGTTACGCGA
GAGGTTCGCGAAGTGGCTCTTCAAGGCCCAAGAGAAGAGGGGATGTGAAA
GACCTCAGTTTGTATGACGTTCTCGGCGTTCAACCGGATGCGAGCGATTC
AGCGATTAAGAAAGCCTATTACTTGCAAGCTAAGCGATGTCATCCTGACA
GACATCCCGACGATCCGCAAGCGACTGAGAAGTTTCAAAGGCTTGGGGAA
GCGTACCAAATTCTATCTAACGAGCACACCAGGGCACTTTATGACAATAG
CGGAATGGAAGGTTTGGAGTCGTCTAACATGGAACGTATGGAAGCTGGAC
AATTATTCGATATGCTCTTTGGTTCGGATCAGTTTGAGTTTCTTGTTGGC
GAGTTGTCCCTTGCCTCTCTTGCTTCCAACGTCGATGAGGATGGTAATGC
TCCTGATGAAAGCTTGTTAAGGAGCATCCAGAAACAAAGAGTCCGCAAAT
TAATTGATGAGCTCACCCGCATCCTGCAGCCATGGACCGGTGGTGATAAG
AGCGCGTTTATTCAATGGGCATATACTAAAGCGCTATGTATTGTGGATAG
CAACTGCGGGCCGGCTATGTTGTACACCATTGGACAAATATACACGCGCA
AAGCAGATATCCACCTGGGGCGTGACCATCTGTTGGGTATTCCCGCAATG
TTTAGTTCTTTTGGGTACTCGAAGCAAAAGTTCTCGACACAGATGAAAGC
CGCAGGTGCAGCTTACAAGGTGATGGACAAGCAACGGCGGATGCAAGACA
AGGTCAGTAGGCTTGAGAAGGAAGGCCGCCGAATGGACGAGGAGGAAGCG
CAAAGAATGGCCATGGACATGGTGGAGAATGCGTTTGACATGATGTGGAA
GATTACTGTGGTCGACATCCAGAAGACTTTAGATGAAGTAATCTCCTTCC
TCCTAGATGGGGAAGATATGCCCGATGATCAAGAAGAAATCGAACAGGTC
ATCCAAGACCTTGATGAAGAAGGCAGAGTCGGGGTCCCTGGCAGGGAAGT
ACTCTACGTACCTCCCTTCGTTAGCCCAGGCTGCACAGGACTCGATTTAT
CGTCTGAAAACAGTGGTGAGAAGGGCAATGAGAAGGGTTCACGCTTCACA
CTTGATAGTTTGGAGAAGGGTATTGAGCGCTTCTTCTTGCCCAAGAAGGA
ACACAAAGAAGGTACCCGCGTGCGAAAACGCGAAGATGTCCTGCACGCAA
GGGCGACTGGTCTCCGAAAGCTTGGAAAGATCTTCATGCAGGTCAGTCAG
GATACTTCCGTTCAATCCGTTACGCTCCATGGCAACGCTGTCCCTGGAAG
TGGATCTGGGAGTGGCTCTGACGGGTGGAGCTGTGATTCAACCCCAAGAC
AAAGTGATGTTGGGGATACGGAAGTTCGGGCGGGTTGA
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protein sequence of Ggra7564.t1

>Ggra7564.t1 ID=Ggra7564.t1|Name=Ggra7564.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=746bp
MADDDRARANACFRLGDWTGAIDRYSKAIELLSLAHLPPDKKLFSNRSAA
HYKLARQLREADDPDGPAILNHLNLAVQDGSKAAELDPLWPKAWCRMGVA
LIDAERFVEAKDVLEKGYRLCPDSEDIEVLYERALQLYAEFESFSVRAHS
RGIKLLQQMDFHAAVTAFTAAIKACDSENRFPTKEMYVGRCEAYYNISRT
ESSSDACEKAMELALDDAERCVRNAPTWPKSWVWKGLVLRAMGKLTEAMK
VLKKGQELCREDDEMNSLIREIDLIMLEKERYARGSRSGSSRPKRRGDVK
DLSLYDVLGVQPDASDSAIKKAYYLQAKRCHPDRHPDDPQATEKFQRLGE
AYQILSNEHTRALYDNSGMEGLESSNMERMEAGQLFDMLFGSDQFEFLVG
ELSLASLASNVDEDGNAPDESLLRSIQKQRVRKLIDELTRILQPWTGGDK
SAFIQWAYTKALCIVDSNCGPAMLYTIGQIYTRKADIHLGRDHLLGIPAM
FSSFGYSKQKFSTQMKAAGAAYKVMDKQRRMQDKVSRLEKEGRRMDEEEA
QRMAMDMVENAFDMMWKITVVDIQKTLDEVISFLLDGEDMPDDQEEIEQV
IQDLDEEGRVGVPGREVLYVPPFVSPGCTGLDLSSENSGEKGNEKGSRFT
LDSLEKGIERFFLPKKEHKEGTRVRKREDVLHARATGLRKLGKIFMQVSQ
DTSVQSVTLHGNAVPGSGSGSGSDGWSCDSTPRQSDVGDTEVRAG*
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mRNA from alignment at tig00000866_pilon:78467..80704-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7564.t1 ID=Ggra7564.t1|Name=Ggra7564.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2238bp|location=Sequence derived from alignment at tig00000866_pilon:78467..80704- (Gracilaria gracilis GNS1m male)
ATGGCTGATGATGACCGTGCCAGGGCCAATGCCTGCTTTCGCCTCGGCGA
TTGGACAGGCGCCATAGACCGCTACTCAAAGGCCATTGAACTGTTGTCCC
TCGCGCACCTTCCGCCCGATAAAAAGCTTTTCTCCAACAGATCAGCTGCC
CATTACAAGCTTGCTCGCCAATTGCGCGAAGCGGATGACCCTGATGGTCC
TGCGATTTTGAATCACCTTAACCTTGCCGTGCAGGATGGTTCTAAAGCTG
CCGAATTGGACCCGTTGTGGCCGAAGGCTTGGTGTCGCATGGGTGTTGCA
CTCATAGACGCTGAGCGTTTTGTCGAGGCCAAGGACGTTTTGGAGAAGGG
ATACCGACTTTGTCCCGACTCTGAAGATATAGAAGTGCTGTATGAACGTG
CTCTACAACTCTATGCCGAGTTTGAGTCTTTCAGCGTCCGAGCGCATAGC
CGGGGTATAAAGCTTCTGCAGCAGATGGACTTTCATGCTGCTGTCACTGC
TTTCACCGCTGCTATTAAAGCGTGCGACTCTGAGAATCGTTTCCCGACAA
AGGAGATGTATGTCGGACGTTGTGAGGCATATTATAACATTTCTCGAACT
GAATCTTCTTCAGATGCTTGTGAGAAGGCCATGGAACTTGCGCTTGATGA
TGCTGAGCGTTGCGTTCGTAATGCACCCACGTGGCCTAAAAGCTGGGTCT
GGAAAGGCCTTGTACTACGCGCCATGGGTAAGTTGACTGAAGCCATGAAG
GTATTGAAGAAGGGACAAGAGCTCTGCAGAGAAGACGACGAAATGAACTC
TCTCATTCGCGAAATTGACCTCATCATGTTAGAGAAAGAGCGTTACGCGA
GAGGTTCGCGAAGTGGCTCTTCAAGGCCCAAGAGAAGAGGGGATGTGAAA
GACCTCAGTTTGTATGACGTTCTCGGCGTTCAACCGGATGCGAGCGATTC
AGCGATTAAGAAAGCCTATTACTTGCAAGCTAAGCGATGTCATCCTGACA
GACATCCCGACGATCCGCAAGCGACTGAGAAGTTTCAAAGGCTTGGGGAA
GCGTACCAAATTCTATCTAACGAGCACACCAGGGCACTTTATGACAATAG
CGGAATGGAAGGTTTGGAGTCGTCTAACATGGAACGTATGGAAGCTGGAC
AATTATTCGATATGCTCTTTGGTTCGGATCAGTTTGAGTTTCTTGTTGGC
GAGTTGTCCCTTGCCTCTCTTGCTTCCAACGTCGATGAGGATGGTAATGC
TCCTGATGAAAGCTTGTTAAGGAGCATCCAGAAACAAAGAGTCCGCAAAT
TAATTGATGAGCTCACCCGCATCCTGCAGCCATGGACCGGTGGTGATAAG
AGCGCGTTTATTCAATGGGCATATACTAAAGCGCTATGTATTGTGGATAG
CAACTGCGGGCCGGCTATGTTGTACACCATTGGACAAATATACACGCGCA
AAGCAGATATCCACCTGGGGCGTGACCATCTGTTGGGTATTCCCGCAATG
TTTAGTTCTTTTGGGTACTCGAAGCAAAAGTTCTCGACACAGATGAAAGC
CGCAGGTGCAGCTTACAAGGTGATGGACAAGCAACGGCGGATGCAAGACA
AGGTCAGTAGGCTTGAGAAGGAAGGCCGCCGAATGGACGAGGAGGAAGCG
CAAAGAATGGCCATGGACATGGTGGAGAATGCGTTTGACATGATGTGGAA
GATTACTGTGGTCGACATCCAGAAGACTTTAGATGAAGTAATCTCCTTCC
TCCTAGATGGGGAAGATATGCCCGATGATCAAGAAGAAATCGAACAGGTC
ATCCAAGACCTTGATGAAGAAGGCAGAGTCGGGGTCCCTGGCAGGGAAGT
ACTCTACGTACCTCCCTTCGTTAGCCCAGGCTGCACAGGACTCGATTTAT
CGTCTGAAAACAGTGGTGAGAAGGGCAATGAGAAGGGTTCACGCTTCACA
CTTGATAGTTTGGAGAAGGGTATTGAGCGCTTCTTCTTGCCCAAGAAGGA
ACACAAAGAAGGTACCCGCGTGCGAAAACGCGAAGATGTCCTGCACGCAA
GGGCGACTGGTCTCCGAAAGCTTGGAAAGATCTTCATGCAGGTCAGTCAG
GATACTTCCGTTCAATCCGTTACGCTCCATGGCAACGCTGTCCCTGGAAG
TGGATCTGGGAGTGGCTCTGACGGGTGGAGCTGTGATTCAACCCCAAGAC
AAAGTGATGTTGGGGATACGGAAGTTCGGGCGGGTTGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:78467..80704-

>Ggra7564.t1 ID=Ggra7564.t1|Name=Ggra7564.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2238bp|location=Sequence derived from alignment at tig00000866_pilon:78467..80704- (Gracilaria gracilis GNS1m male)
ATGGCTGATGATGACCGTGCCAGGGCCAATGCCTGCTTTCGCCTCGGCGA
TTGGACAGGCGCCATAGACCGCTACTCAAAGGCCATTGAACTGTTGTCCC
TCGCGCACCTTCCGCCCGATAAAAAGCTTTTCTCCAACAGATCAGCTGCC
CATTACAAGCTTGCTCGCCAATTGCGCGAAGCGGATGACCCTGATGGTCC
TGCGATTTTGAATCACCTTAACCTTGCCGTGCAGGATGGTTCTAAAGCTG
CCGAATTGGACCCGTTGTGGCCGAAGGCTTGGTGTCGCATGGGTGTTGCA
CTCATAGACGCTGAGCGTTTTGTCGAGGCCAAGGACGTTTTGGAGAAGGG
ATACCGACTTTGTCCCGACTCTGAAGATATAGAAGTGCTGTATGAACGTG
CTCTACAACTCTATGCCGAGTTTGAGTCTTTCAGCGTCCGAGCGCATAGC
CGGGGTATAAAGCTTCTGCAGCAGATGGACTTTCATGCTGCTGTCACTGC
TTTCACCGCTGCTATTAAAGCGTGCGACTCTGAGAATCGTTTCCCGACAA
AGGAGATGTATGTCGGACGTTGTGAGGCATATTATAACATTTCTCGAACT
GAATCTTCTTCAGATGCTTGTGAGAAGGCCATGGAACTTGCGCTTGATGA
TGCTGAGCGTTGCGTTCGTAATGCACCCACGTGGCCTAAAAGCTGGGTCT
GGAAAGGCCTTGTACTACGCGCCATGGGTAAGTTGACTGAAGCCATGAAG
GTATTGAAGAAGGGACAAGAGCTCTGCAGAGAAGACGACGAAATGAACTC
TCTCATTCGCGAAATTGACCTCATCATGTTAGAGAAAGAGCGTTACGCGA
GAGGTTCGCGAAGTGGCTCTTCAAGGCCCAAGAGAAGAGGGGATGTGAAA
GACCTCAGTTTGTATGACGTTCTCGGCGTTCAACCGGATGCGAGCGATTC
AGCGATTAAGAAAGCCTATTACTTGCAAGCTAAGCGATGTCATCCTGACA
GACATCCCGACGATCCGCAAGCGACTGAGAAGTTTCAAAGGCTTGGGGAA
GCGTACCAAATTCTATCTAACGAGCACACCAGGGCACTTTATGACAATAG
CGGAATGGAAGGTTTGGAGTCGTCTAACATGGAACGTATGGAAGCTGGAC
AATTATTCGATATGCTCTTTGGTTCGGATCAGTTTGAGTTTCTTGTTGGC
GAGTTGTCCCTTGCCTCTCTTGCTTCCAACGTCGATGAGGATGGTAATGC
TCCTGATGAAAGCTTGTTAAGGAGCATCCAGAAACAAAGAGTCCGCAAAT
TAATTGATGAGCTCACCCGCATCCTGCAGCCATGGACCGGTGGTGATAAG
AGCGCGTTTATTCAATGGGCATATACTAAAGCGCTATGTATTGTGGATAG
CAACTGCGGGCCGGCTATGTTGTACACCATTGGACAAATATACACGCGCA
AAGCAGATATCCACCTGGGGCGTGACCATCTGTTGGGTATTCCCGCAATG
TTTAGTTCTTTTGGGTACTCGAAGCAAAAGTTCTCGACACAGATGAAAGC
CGCAGGTGCAGCTTACAAGGTGATGGACAAGCAACGGCGGATGCAAGACA
AGGTCAGTAGGCTTGAGAAGGAAGGCCGCCGAATGGACGAGGAGGAAGCG
CAAAGAATGGCCATGGACATGGTGGAGAATGCGTTTGACATGATGTGGAA
GATTACTGTGGTCGACATCCAGAAGACTTTAGATGAAGTAATCTCCTTCC
TCCTAGATGGGGAAGATATGCCCGATGATCAAGAAGAAATCGAACAGGTC
ATCCAAGACCTTGATGAAGAAGGCAGAGTCGGGGTCCCTGGCAGGGAAGT
ACTCTACGTACCTCCCTTCGTTAGCCCAGGCTGCACAGGACTCGATTTAT
CGTCTGAAAACAGTGGTGAGAAGGGCAATGAGAAGGGTTCACGCTTCACA
CTTGATAGTTTGGAGAAGGGTATTGAGCGCTTCTTCTTGCCCAAGAAGGA
ACACAAAGAAGGTACCCGCGTGCGAAAACGCGAAGATGTCCTGCACGCAA
GGGCGACTGGTCTCCGAAAGCTTGGAAAGATCTTCATGCAGGTCAGTCAG
GATACTTCCGTTCAATCCGTTACGCTCCATGGCAACGCTGTCCCTGGAAG
TGGATCTGGGAGTGGCTCTGACGGGTGGAGCTGTGATTCAACCCCAAGAC
AAAGTGATGTTGGGGATACGGAAGTTCGGGCGGGTTGA
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