Ggra7550.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7550.t1
Unique Name	Ggra7550.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000866_pilon	contig	tig00000866_pilon:36385..37299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	926550.CLDAP_09190
Preferred name	menH
PFAMs	Abhydrolase_1,Abhydrolase_6
Max annot lvl	200795\|Chloroflexi
KEGG rclass	RC02148,RC02475
KEGG ko	ko:K08680
KEGG Reaction	R08166
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00116
Evalue	3.31e-27
EggNOG OGs	COG2267@1\|root,COG2267@2\|Bacteria,2GBHH@200795\|Chloroflexi
EC	4.2.99.20
Description	Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC)
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7550	Ggra7550	Gracilaria gracilis GNS1m male	gene	tig00000866_pilon 36385..37299 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7550.t1.start1	Ggra7550.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000866_pilon 36385..36387 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7550.t1.CDS1	Ggra7550.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000866_pilon 36385..37299 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7550.t1.exon1	Ggra7550.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000866_pilon 36385..37299 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7550.t1.stop1	Ggra7550.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000866_pilon 37297..37299 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7550.t1	Ggra7550.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000866_pilon 36385..37299 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000866_pilon:36385..37299+
coding sequence from alignment at tig00000866_pilon:36385..37299+

mRNA sequence

>Ggra7550.t1 ID=Ggra7550.t1|Name=Ggra7550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MSSQLTLGTLQTKDFANIALCTRITEGGREAALFLHDFMTDSRLFHPLFN
QSKHLLPCNLVAFDLRGYGKSTDPTGTYSHMDDIDAVLDYLQIEQVHLVG
AGMGGIIALEYAIARRDRTHSVALFGSGLPGHRWSSKYFMDVSEARFVGR
MRSVGAKYVLGSESARNPVTWKQSYIKLNETWSDPLRSGDKQVAKRLLSM
AKSYRAFHFFAYDPVTPQLSDVDPLRKRLGDVQIPVLVAVGKNDTHDFQE
IAREISEGVGTEPVYIDDTRHFIPLERPAVMAELLKQFWLTVYDERNDEE
TNMK*

spliced messenger RNA

>Ggra7550.t1 ID=Ggra7550.t1|Name=Ggra7550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000866_pilon:36385..37299+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCACAACTAACTTTAGGTACCTTGCAAACGAAGGACTTTGCTAA
TATTGCACTTTGCACCCGAATTACGGAAGGTGGCAGAGAAGCTGCACTCT
TTCTTCATGATTTTATGACGGATAGTCGTCTTTTTCACCCCCTCTTTAAT
CAGTCAAAACACCTGCTTCCTTGTAATCTGGTTGCTTTTGATCTTCGCGG
ATACGGAAAATCAACTGACCCCACTGGCACATATTCACATATGGATGACA
TTGATGCAGTTCTAGACTACCTTCAAATCGAACAAGTCCATCTTGTTGGC
GCGGGAATGGGTGGAATTATTGCCCTAGAGTACGCAATTGCCAGAAGAGA
TAGAACACATAGTGTAGCTCTTTTTGGAAGTGGTTTGCCCGGACATCGTT
GGAGCTCGAAGTATTTCATGGATGTCTCGGAGGCTCGTTTTGTTGGTCGA
ATGCGCTCCGTAGGAGCCAAATATGTCCTTGGTAGTGAGTCTGCCCGAAA
TCCCGTGACATGGAAGCAGTCATATATCAAATTAAATGAAACATGGTCAG
ATCCGCTTCGAAGTGGTGATAAGCAAGTGGCAAAGCGCTTGCTTTCAATG
GCCAAATCGTACAGGGCTTTTCACTTCTTTGCGTACGATCCAGTTACTCC
CCAACTTTCCGATGTTGACCCACTGCGTAAAAGACTGGGCGACGTTCAGA
TTCCAGTGCTGGTTGCCGTTGGCAAGAATGACACTCACGATTTCCAAGAA
ATAGCCAGAGAGATATCCGAGGGTGTGGGTACTGAACCTGTTTATATTGA
CGATACTCGGCATTTTATCCCATTGGAACGGCCAGCCGTTATGGCTGAAC
TTCTTAAGCAGTTCTGGTTAACGGTCTATGACGAAAGGAATGACGAAGAA
ACTAATATGAAATGA

protein sequence of Ggra7550.t1

>Ggra7550.t1 ID=Ggra7550.t1|Name=Ggra7550.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MSSQLTLGTLQTKDFANIALCTRITEGGREAALFLHDFMTDSRLFHPLFN
QSKHLLPCNLVAFDLRGYGKSTDPTGTYSHMDDIDAVLDYLQIEQVHLVG
AGMGGIIALEYAIARRDRTHSVALFGSGLPGHRWSSKYFMDVSEARFVGR
MRSVGAKYVLGSESARNPVTWKQSYIKLNETWSDPLRSGDKQVAKRLLSM
AKSYRAFHFFAYDPVTPQLSDVDPLRKRLGDVQIPVLVAVGKNDTHDFQE
IAREISEGVGTEPVYIDDTRHFIPLERPAVMAELLKQFWLTVYDERNDEE
TNMK*

mRNA from alignment at tig00000866_pilon:36385..37299+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7550.t1 ID=Ggra7550.t1|Name=Ggra7550.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000866_pilon:36385..37299+ (Gracilaria gracilis GNS1m male)
ATGTCGTCACAACTAACTTTAGGTACCTTGCAAACGAAGGACTTTGCTAA
TATTGCACTTTGCACCCGAATTACGGAAGGTGGCAGAGAAGCTGCACTCT
TTCTTCATGATTTTATGACGGATAGTCGTCTTTTTCACCCCCTCTTTAAT
CAGTCAAAACACCTGCTTCCTTGTAATCTGGTTGCTTTTGATCTTCGCGG
ATACGGAAAATCAACTGACCCCACTGGCACATATTCACATATGGATGACA
TTGATGCAGTTCTAGACTACCTTCAAATCGAACAAGTCCATCTTGTTGGC
GCGGGAATGGGTGGAATTATTGCCCTAGAGTACGCAATTGCCAGAAGAGA
TAGAACACATAGTGTAGCTCTTTTTGGAAGTGGTTTGCCCGGACATCGTT
GGAGCTCGAAGTATTTCATGGATGTCTCGGAGGCTCGTTTTGTTGGTCGA
ATGCGCTCCGTAGGAGCCAAATATGTCCTTGGTAGTGAGTCTGCCCGAAA
TCCCGTGACATGGAAGCAGTCATATATCAAATTAAATGAAACATGGTCAG
ATCCGCTTCGAAGTGGTGATAAGCAAGTGGCAAAGCGCTTGCTTTCAATG
GCCAAATCGTACAGGGCTTTTCACTTCTTTGCGTACGATCCAGTTACTCC
CCAACTTTCCGATGTTGACCCACTGCGTAAAAGACTGGGCGACGTTCAGA
TTCCAGTGCTGGTTGCCGTTGGCAAGAATGACACTCACGATTTCCAAGAA
ATAGCCAGAGAGATATCCGAGGGTGTGGGTACTGAACCTGTTTATATTGA
CGATACTCGGCATTTTATCCCATTGGAACGGCCAGCCGTTATGGCTGAAC
TTCTTAAGCAGTTCTGGTTAACGGTCTATGACGAAAGGAATGACGAAGAA
ACTAATATGAAATGA

Coding sequence (CDS) from alignment at tig00000866_pilon:36385..37299+

>Ggra7550.t1 ID=Ggra7550.t1|Name=Ggra7550.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000866_pilon:36385..37299+ (Gracilaria gracilis GNS1m male)
ATGTCGTCACAACTAACTTTAGGTACCTTGCAAACGAAGGACTTTGCTAA
TATTGCACTTTGCACCCGAATTACGGAAGGTGGCAGAGAAGCTGCACTCT
TTCTTCATGATTTTATGACGGATAGTCGTCTTTTTCACCCCCTCTTTAAT
CAGTCAAAACACCTGCTTCCTTGTAATCTGGTTGCTTTTGATCTTCGCGG
ATACGGAAAATCAACTGACCCCACTGGCACATATTCACATATGGATGACA
TTGATGCAGTTCTAGACTACCTTCAAATCGAACAAGTCCATCTTGTTGGC
GCGGGAATGGGTGGAATTATTGCCCTAGAGTACGCAATTGCCAGAAGAGA
TAGAACACATAGTGTAGCTCTTTTTGGAAGTGGTTTGCCCGGACATCGTT
GGAGCTCGAAGTATTTCATGGATGTCTCGGAGGCTCGTTTTGTTGGTCGA
ATGCGCTCCGTAGGAGCCAAATATGTCCTTGGTAGTGAGTCTGCCCGAAA
TCCCGTGACATGGAAGCAGTCATATATCAAATTAAATGAAACATGGTCAG
ATCCGCTTCGAAGTGGTGATAAGCAAGTGGCAAAGCGCTTGCTTTCAATG
GCCAAATCGTACAGGGCTTTTCACTTCTTTGCGTACGATCCAGTTACTCC
CCAACTTTCCGATGTTGACCCACTGCGTAAAAGACTGGGCGACGTTCAGA
TTCCAGTGCTGGTTGCCGTTGGCAAGAATGACACTCACGATTTCCAAGAA
ATAGCCAGAGAGATATCCGAGGGTGTGGGTACTGAACCTGTTTATATTGA
CGATACTCGGCATTTTATCCCATTGGAACGGCCAGCCGTTATGGCTGAAC
TTCTTAAGCAGTTCTGGTTAACGGTCTATGACGAAAGGAATGACGAAGAA
ACTAATATGAAATGA