Ggra7546.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7546.t1
Unique NameGgra7546.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:31071..31992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_013_00603.1
PFAMsDUF1499
Max annot lvl35493|Streptophyta
Evalue1.99e-30
EggNOG OGsCOG4446@1|root,2QPJZ@2759|Eukaryota,37K1E@33090|Viridiplantae,3GGYS@35493|Streptophyta
DescriptionProtein of unknown function (DUF1499)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7546Ggra7546Gracilaria gracilis GNS1m malegenetig00000866_pilon 31071..31992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7546.t1Ggra7546.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 31071..31992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7546.t1.stop1Ggra7546.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 31071..31073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7546.t1.CDS1Ggra7546.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 31071..31103 -
Ggra7546.t1.CDS2Ggra7546.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000866_pilon 31186..31355 -
Ggra7546.t1.CDS3Ggra7546.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000866_pilon 31435..31603 -
Ggra7546.t1.CDS4Ggra7546.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000866_pilon 31687..31992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7546.t1.exon1Ggra7546.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 31071..31103 -
Ggra7546.t1.exon2Ggra7546.t1.exon2Gracilaria gracilis GNS1m maleexontig00000866_pilon 31186..31355 -
Ggra7546.t1.exon3Ggra7546.t1.exon3Gracilaria gracilis GNS1m maleexontig00000866_pilon 31435..31603 -
Ggra7546.t1.exon4Ggra7546.t1.exon4Gracilaria gracilis GNS1m maleexontig00000866_pilon 31687..31992 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7546.t1.intron1Ggra7546.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000866_pilon 31104..31185 -
Ggra7546.t1.intron2Ggra7546.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000866_pilon 31356..31434 -
Ggra7546.t1.intron3Ggra7546.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000866_pilon 31604..31686 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7546.t1.start1Ggra7546.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 31990..31992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7546.t1 ID=Ggra7546.t1|Name=Ggra7546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MAFVLSSTSLASSFAQPCVTRKSVCASKSPKMLTGNELATKLKIFAIGGA
VALSTTLSVPNDANAALFHFRGNRPQNIGLQYGRYLQGCPASPNCISSME
DPYDSHFVPSWTYNASGKEKSKSMQEAIKDVTKVIEEYPQTTIITDEETT
SEAGKGHYIYAEFESKLMGYVDDVEFFFQPDSPTVEYRSASRLGEGDFDA
NRKRIRDLRQALQQMDNQWASTGYN*
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spliced messenger RNA

>Ggra7546.t1 ID=Ggra7546.t1|Name=Ggra7546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000866_pilon:31071..31992- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTATTATCGTCAACTTCTCTGGCATCGTCATTTGCTCAGCC
ATGTGTTACAAGAAAGTCAGTTTGTGCATCGAAGTCGCCGAAGATGCTTA
CGGGAAATGAATTGGCGACCAAGCTCAAAATATTTGCCATCGGCGGAGCA
GTTGCTTTGTCTACCACGTTGAGTGTCCCAAACGATGCCAATGCAGCTCT
CTTCCACTTCCGAGGAAATCGCCCCCAGAACATCGGCCTACAATATGGTC
GTTACCTTCAGGGCTGCCCGGCGTCACCCAATTGCATTTCTTCTATGGAA
GATCCTTACGACAGCCATTTTGTCCCGTCTTGGACATACAATGCTAGTGG
CAAGGAGAAGAGTAAAAGCATGCAGGAGGCCATAAAAGATGTTACCAAAG
TTATTGAAGAATATCCCCAAACAACAATAATTACCGATGAGGAAACGACC
AGTGAAGCTGGTAAAGGGCACTACATTTACGCCGAATTTGAATCGAAGCT
GATGGGTTACGTAGATGATGTAGAGTTTTTCTTCCAGCCTGATAGCCCAA
CTGTCGAGTATAGAAGTGCTTCTCGTCTCGGCGAAGGGGACTTCGATGCG
AACCGAAAACGGATTCGGGACTTGCGTCAAGCTCTGCAGCAAATGGATAA
TCAATGGGCGTCCACTGGATACAACTAA
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protein sequence of Ggra7546.t1

>Ggra7546.t1 ID=Ggra7546.t1|Name=Ggra7546.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MAFVLSSTSLASSFAQPCVTRKSVCASKSPKMLTGNELATKLKIFAIGGA
VALSTTLSVPNDANAALFHFRGNRPQNIGLQYGRYLQGCPASPNCISSME
DPYDSHFVPSWTYNASGKEKSKSMQEAIKDVTKVIEEYPQTTIITDEETT
SEAGKGHYIYAEFESKLMGYVDDVEFFFQPDSPTVEYRSASRLGEGDFDA
NRKRIRDLRQALQQMDNQWASTGYN*
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mRNA from alignment at tig00000866_pilon:31071..31992-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7546.t1 ID=Ggra7546.t1|Name=Ggra7546.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=922bp|location=Sequence derived from alignment at tig00000866_pilon:31071..31992- (Gracilaria gracilis GNS1m male)
ATGGCATTCGTATTATCGTCAACTTCTCTGGCATCGTCATTTGCTCAGCC
ATGTGTTACAAGAAAGTCAGTTTGTGCATCGAAGTCGCCGAAGATGCTTA
CGGGAAATGAATTGGCGACCAAGCTCAAAATATTTGCCATCGGCGGAGCA
GTTGCTTTGTCTACCACGTTGAGTGTCCCAAACGATGCCAATGCAGCTCT
CTTCCACTTCCGAGGAAATCGCCCCCAGAACATCGGCCTACAATATGGTC
GTTACCTTCAGGGCTGCCCGGCGTCACCCAATTGCATTTCTTCTATGGAA
GATCCTGTAAGTTGAAAGAAACAGCCTCAGGCCATGAATTCAGTTCTAAC
TCTAGTAACGACTTCTTGTTGTTTTCTCTACCATGATAGTACGACAGCCA
TTTTGTCCCGTCTTGGACATACAATGCTAGTGGCAAGGAGAAGAGTAAAA
GCATGCAGGAGGCCATAAAAGATGTTACCAAAGTTATTGAAGAATATCCC
CAAACAACAATAATTACCGATGAGGAAACGACCAGTGAAGCTGGTAAAGG
GCACTACAGTAAGTTTCCAAAAACCAAGTGATATTGTAACTATTGATCTA
ACAAGAGAGTTTCATGTGGATAACCTTACATCGGCAGTTTACGCCGAATT
TGAATCGAAGCTGATGGGTTACGTAGATGATGTAGAGTTTTTCTTCCAGC
CTGATAGCCCAACTGTCGAGTATAGAAGTGCTTCTCGTCTCGGCGAAGGG
GACTTCGATGCGAACCGAAAACGGATTCGGGACTTGCGTCAAGCTCTGCA
GCAAATGGTAAGCTCCATGAACGGCTTTTGGATGAATTACAAAATGACGG
CTAACATATCATTACTTATTACCTGATTCAAATCCACAGGATAATCAATG
GGCGTCCACTGGATACAACTAA
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Coding sequence (CDS) from alignment at tig00000866_pilon:31071..31992-

>Ggra7546.t1 ID=Ggra7546.t1|Name=Ggra7546.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000866_pilon:31071..31992- (Gracilaria gracilis GNS1m male)
ATGGCATTCGTATTATCGTCAACTTCTCTGGCATCGTCATTTGCTCAGCC
ATGTGTTACAAGAAAGTCAGTTTGTGCATCGAAGTCGCCGAAGATGCTTA
CGGGAAATGAATTGGCGACCAAGCTCAAAATATTTGCCATCGGCGGAGCA
GTTGCTTTGTCTACCACGTTGAGTGTCCCAAACGATGCCAATGCAGCTCT
CTTCCACTTCCGAGGAAATCGCCCCCAGAACATCGGCCTACAATATGGTC
GTTACCTTCAGGGCTGCCCGGCGTCACCCAATTGCATTTCTTCTATGGAA
GATCCTTACGACAGCCATTTTGTCCCGTCTTGGACATACAATGCTAGTGG
CAAGGAGAAGAGTAAAAGCATGCAGGAGGCCATAAAAGATGTTACCAAAG
TTATTGAAGAATATCCCCAAACAACAATAATTACCGATGAGGAAACGACC
AGTGAAGCTGGTAAAGGGCACTACATTTACGCCGAATTTGAATCGAAGCT
GATGGGTTACGTAGATGATGTAGAGTTTTTCTTCCAGCCTGATAGCCCAA
CTGTCGAGTATAGAAGTGCTTCTCGTCTCGGCGAAGGGGACTTCGATGCG
AACCGAAAACGGATTCGGGACTTGCGTCAAGCTCTGCAGCAAATGGATAA
TCAATGGGCGTCCACTGGATACAACTAA
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