Ggra7544.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7544.t1
Unique NameGgra7544.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:28956..29999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog460265.Mnod_0050
Preferred namepanE
PFAMsApbA,ApbA_C,DUF2437,FAA_hydrolase
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00726
KEGG koko:K00077
KEGG ReactionR02472
KEGG Pathwayko00770,ko01100,ko01110,map00770,map01100,map01110
KEGG ModuleM00119
Evalue7.7e-110
EggNOG OGsCOG1893@1|root,COG1893@2|Bacteria,1MVZ1@1224|Proteobacteria,2TRJN@28211|Alphaproteobacteria,1JTXN@119045|Methylobacteriaceae
EC1.1.1.169
DescriptionCatalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7544Ggra7544Gracilaria gracilis GNS1m malegenetig00000866_pilon 28956..29999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7544.t1.stop1Ggra7544.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 28956..28958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7544.t1.CDS1Ggra7544.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 28956..29999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7544.t1.exon1Ggra7544.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 28956..29999 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7544.t1.start1Ggra7544.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 29997..29999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7544.t1Ggra7544.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 28956..29999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7544.t1 ID=Ggra7544.t1|Name=Ggra7544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=348bp
MPYPETAKICVVGAGAIGGLLGVELSRRGHSVAFFARGGHLAAMRNEGAL
KLIKLDGSTVESARGSTFIATLEEAGIQDLVILGLKMHQIKAVLPTLHHI
VGPNTVLLGTQNGIPWWYFQEYKGPEEFKDRTVESADPGGVLKTSIDAKK
LIATVVYPAAVVASPGVIKHVEGIRFPVGEPNGQTTERVQWVSSMLIDAG
FKSPVLEDVRGEMWLKLWGTVAVNPLSALTHATLDVLCTVPAGREVVVSM
MKEVEKVANRLGSKMRLPIERRVNGAAKVGRHKTSMLQDVETGREMEIET
IMGAVVEMARVCGEDTPCIDTIYGTVRMLAYVMKEEKSRVCLLPVEG*
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spliced messenger RNA

>Ggra7544.t1 ID=Ggra7544.t1|Name=Ggra7544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000866_pilon:28956..29999- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTACCCCGAGACAGCTAAGATATGCGTTGTAGGAGCAGGAGCCAT
TGGAGGACTGCTAGGGGTGGAGTTGTCTCGTCGCGGACATAGTGTTGCCT
TTTTTGCGAGAGGGGGACACCTCGCCGCCATGCGAAATGAAGGAGCTCTC
AAGTTGATAAAACTAGATGGAAGTACCGTTGAATCCGCAAGAGGTTCTAC
GTTCATCGCAACTCTGGAAGAAGCCGGAATACAAGATCTTGTGATTCTGG
GATTGAAAATGCATCAGATCAAAGCTGTGCTACCGACACTTCATCATATA
GTAGGCCCAAATACTGTGCTGTTAGGAACGCAGAATGGGATTCCGTGGTG
GTACTTTCAAGAGTACAAGGGACCCGAAGAGTTCAAGGACCGAACTGTGG
AAAGCGCTGATCCTGGAGGTGTACTGAAGACCTCAATAGATGCCAAAAAG
CTGATTGCGACGGTTGTATATCCAGCTGCTGTTGTCGCGTCTCCCGGTGT
TATTAAGCATGTCGAAGGCATACGTTTCCCAGTTGGAGAACCAAATGGGC
AGACTACAGAAAGAGTTCAATGGGTTTCCAGTATGTTGATTGACGCCGGA
TTCAAGTCTCCCGTGCTAGAAGATGTGCGGGGTGAGATGTGGCTCAAACT
CTGGGGGACAGTAGCTGTCAATCCGCTATCTGCACTCACTCATGCTACTC
TGGATGTTTTGTGCACAGTCCCAGCTGGTCGAGAGGTCGTAGTGAGTATG
ATGAAGGAAGTGGAAAAGGTTGCAAACAGGCTGGGGTCAAAAATGAGGTT
GCCAATTGAACGACGGGTAAACGGGGCAGCGAAGGTCGGAAGGCATAAAA
CGTCGATGCTGCAAGACGTTGAAACAGGGCGTGAAATGGAGATCGAAACT
ATTATGGGTGCGGTCGTTGAGATGGCTCGAGTATGCGGCGAGGATACACC
TTGTATTGACACCATATATGGCACAGTCAGGATGCTGGCCTATGTTATGA
AAGAGGAGAAGTCAAGAGTCTGTCTGCTTCCTGTTGAAGGGTAG
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protein sequence of Ggra7544.t1

>Ggra7544.t1 ID=Ggra7544.t1|Name=Ggra7544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=348bp
MPYPETAKICVVGAGAIGGLLGVELSRRGHSVAFFARGGHLAAMRNEGAL
KLIKLDGSTVESARGSTFIATLEEAGIQDLVILGLKMHQIKAVLPTLHHI
VGPNTVLLGTQNGIPWWYFQEYKGPEEFKDRTVESADPGGVLKTSIDAKK
LIATVVYPAAVVASPGVIKHVEGIRFPVGEPNGQTTERVQWVSSMLIDAG
FKSPVLEDVRGEMWLKLWGTVAVNPLSALTHATLDVLCTVPAGREVVVSM
MKEVEKVANRLGSKMRLPIERRVNGAAKVGRHKTSMLQDVETGREMEIET
IMGAVVEMARVCGEDTPCIDTIYGTVRMLAYVMKEEKSRVCLLPVEG*
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mRNA from alignment at tig00000866_pilon:28956..29999-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7544.t1 ID=Ggra7544.t1|Name=Ggra7544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00000866_pilon:28956..29999- (Gracilaria gracilis GNS1m male)
ATGCCGTACCCCGAGACAGCTAAGATATGCGTTGTAGGAGCAGGAGCCAT
TGGAGGACTGCTAGGGGTGGAGTTGTCTCGTCGCGGACATAGTGTTGCCT
TTTTTGCGAGAGGGGGACACCTCGCCGCCATGCGAAATGAAGGAGCTCTC
AAGTTGATAAAACTAGATGGAAGTACCGTTGAATCCGCAAGAGGTTCTAC
GTTCATCGCAACTCTGGAAGAAGCCGGAATACAAGATCTTGTGATTCTGG
GATTGAAAATGCATCAGATCAAAGCTGTGCTACCGACACTTCATCATATA
GTAGGCCCAAATACTGTGCTGTTAGGAACGCAGAATGGGATTCCGTGGTG
GTACTTTCAAGAGTACAAGGGACCCGAAGAGTTCAAGGACCGAACTGTGG
AAAGCGCTGATCCTGGAGGTGTACTGAAGACCTCAATAGATGCCAAAAAG
CTGATTGCGACGGTTGTATATCCAGCTGCTGTTGTCGCGTCTCCCGGTGT
TATTAAGCATGTCGAAGGCATACGTTTCCCAGTTGGAGAACCAAATGGGC
AGACTACAGAAAGAGTTCAATGGGTTTCCAGTATGTTGATTGACGCCGGA
TTCAAGTCTCCCGTGCTAGAAGATGTGCGGGGTGAGATGTGGCTCAAACT
CTGGGGGACAGTAGCTGTCAATCCGCTATCTGCACTCACTCATGCTACTC
TGGATGTTTTGTGCACAGTCCCAGCTGGTCGAGAGGTCGTAGTGAGTATG
ATGAAGGAAGTGGAAAAGGTTGCAAACAGGCTGGGGTCAAAAATGAGGTT
GCCAATTGAACGACGGGTAAACGGGGCAGCGAAGGTCGGAAGGCATAAAA
CGTCGATGCTGCAAGACGTTGAAACAGGGCGTGAAATGGAGATCGAAACT
ATTATGGGTGCGGTCGTTGAGATGGCTCGAGTATGCGGCGAGGATACACC
TTGTATTGACACCATATATGGCACAGTCAGGATGCTGGCCTATGTTATGA
AAGAGGAGAAGTCAAGAGTCTGTCTGCTTCCTGTTGAAGGGTAG
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Coding sequence (CDS) from alignment at tig00000866_pilon:28956..29999-

>Ggra7544.t1 ID=Ggra7544.t1|Name=Ggra7544.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00000866_pilon:28956..29999- (Gracilaria gracilis GNS1m male)
ATGCCGTACCCCGAGACAGCTAAGATATGCGTTGTAGGAGCAGGAGCCAT
TGGAGGACTGCTAGGGGTGGAGTTGTCTCGTCGCGGACATAGTGTTGCCT
TTTTTGCGAGAGGGGGACACCTCGCCGCCATGCGAAATGAAGGAGCTCTC
AAGTTGATAAAACTAGATGGAAGTACCGTTGAATCCGCAAGAGGTTCTAC
GTTCATCGCAACTCTGGAAGAAGCCGGAATACAAGATCTTGTGATTCTGG
GATTGAAAATGCATCAGATCAAAGCTGTGCTACCGACACTTCATCATATA
GTAGGCCCAAATACTGTGCTGTTAGGAACGCAGAATGGGATTCCGTGGTG
GTACTTTCAAGAGTACAAGGGACCCGAAGAGTTCAAGGACCGAACTGTGG
AAAGCGCTGATCCTGGAGGTGTACTGAAGACCTCAATAGATGCCAAAAAG
CTGATTGCGACGGTTGTATATCCAGCTGCTGTTGTCGCGTCTCCCGGTGT
TATTAAGCATGTCGAAGGCATACGTTTCCCAGTTGGAGAACCAAATGGGC
AGACTACAGAAAGAGTTCAATGGGTTTCCAGTATGTTGATTGACGCCGGA
TTCAAGTCTCCCGTGCTAGAAGATGTGCGGGGTGAGATGTGGCTCAAACT
CTGGGGGACAGTAGCTGTCAATCCGCTATCTGCACTCACTCATGCTACTC
TGGATGTTTTGTGCACAGTCCCAGCTGGTCGAGAGGTCGTAGTGAGTATG
ATGAAGGAAGTGGAAAAGGTTGCAAACAGGCTGGGGTCAAAAATGAGGTT
GCCAATTGAACGACGGGTAAACGGGGCAGCGAAGGTCGGAAGGCATAAAA
CGTCGATGCTGCAAGACGTTGAAACAGGGCGTGAAATGGAGATCGAAACT
ATTATGGGTGCGGTCGTTGAGATGGCTCGAGTATGCGGCGAGGATACACC
TTGTATTGACACCATATATGGCACAGTCAGGATGCTGGCCTATGTTATGA
AAGAGGAGAAGTCAAGAGTCTGTCTGCTTCCTGTTGAAGGGTAG
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