Ggra7542.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7542.t1
Unique NameGgra7542.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length259
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:26264..27129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_06138T0
Preferred nameEAF3
PFAMsMRG,Tudor-knot
Max annot lvl4751|Fungi
KEGG koko:K11339
GOsGO:0000118,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006275,GO:0006281,GO:0006325,GO:0006338,GO:0006342,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007163,GO:0008150,GO:0008152,GO:0008360,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0016575,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022603,GO:0022604,GO:0030174,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032221,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035267,GO:0035601,GO:0036211,GO:0040029,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060194,GO:0060195,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070822,GO:0071704,GO:0071840,GO:0071963,GO:0080090,GO:0090304,GO:0090329,GO:0097659,GO:0098732,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue4.51e-39
EggNOG OGsKOG3001@1|root,KOG3001@2759|Eukaryota,38ZRW@33154|Opisthokonta,3NVZW@4751|Fungi,1GTD1@112252|Fungi incertae sedis
DescriptionMRG
COG categoryBK
BRITEko00000,ko03036,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7542Ggra7542Gracilaria gracilis GNS1m malegenetig00000866_pilon 26264..27129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7542.t1Ggra7542.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 26264..27129 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7542.t1.start1Ggra7542.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 26264..26266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7542.t1.CDS1Ggra7542.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 26264..26458 +
Ggra7542.t1.CDS2Ggra7542.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000866_pilon 26548..27129 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7542.t1.exon1Ggra7542.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 26264..26458 +
Ggra7542.t1.exon2Ggra7542.t1.exon2Gracilaria gracilis GNS1m maleexontig00000866_pilon 26548..27129 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7542.t1.intron1Ggra7542.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000866_pilon 26459..26547 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7542.t1.stop1Ggra7542.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 27127..27129 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7542.t1 ID=Ggra7542.t1|Name=Ggra7542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=259bp
MAKLPDHDRPIPSDTDFEVNTLVLAFHGNLLYEATILSIDREPGQERAHA
YLVHFHGWKKSWDEKAVQATQPSENERENRQQTEKSNSNASSPSQLFQIP
PGLQRQLVDDWDAITRENRLVPLPRPLTVQALLQKWVAGRRQSSDKAARE
VAEGLQIYFDATLPMILLYHFERQQYRNHVEKSDKPPSAIYGPEHLLRLL
FKLPFILEEGPIEREKLESIAEKVNELAKYMQKHGKALFQSEYDPAPESY
IRESGECQ*
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spliced messenger RNA

>Ggra7542.t1 ID=Ggra7542.t1|Name=Ggra7542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=777bp|location=Sequence derived from alignment at tig00000866_pilon:26264..27129+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAGCTACCGGACCACGACCGTCCGATTCCATCTGATACGGACTT
CGAGGTTAATACACTTGTGCTGGCATTTCACGGCAACTTGTTGTACGAAG
CCACTATCTTGAGCATAGACCGCGAACCCGGTCAGGAACGCGCTCACGCG
TACTTGGTTCACTTTCACGGGTGGAAGAAGTCATGGGACGAAAAAGCCGT
ACAAGCGACACAGCCTTCGGAAAACGAGCGGGAGAATAGGCAGCAAACGG
AGAAGAGTAACTCAAACGCGTCGTCTCCAAGCCAGCTTTTCCAAATTCCG
CCGGGTTTGCAGAGACAGCTGGTTGATGACTGGGATGCAATTACAAGAGA
AAACAGACTTGTACCTTTACCACGCCCACTCACAGTTCAAGCTCTCTTGC
AGAAATGGGTTGCAGGGAGACGCCAGTCGTCCGATAAAGCCGCTCGAGAG
GTTGCTGAAGGTCTGCAGATATATTTCGATGCTACACTTCCAATGATACT
GCTTTATCATTTTGAGAGGCAGCAATACAGGAACCATGTTGAGAAGTCTG
ACAAACCGCCCAGTGCCATCTACGGACCTGAACATTTACTGCGTCTACTG
TTCAAACTTCCTTTTATTCTAGAAGAAGGCCCTATCGAGCGAGAGAAATT
GGAGTCTATAGCGGAGAAGGTGAACGAACTGGCGAAGTACATGCAAAAAC
ACGGCAAGGCGTTGTTTCAAAGCGAATACGACCCTGCTCCGGAATCGTAT
ATCAGAGAGAGTGGCGAATGTCAGTGA
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protein sequence of Ggra7542.t1

>Ggra7542.t1 ID=Ggra7542.t1|Name=Ggra7542.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=259bp
MAKLPDHDRPIPSDTDFEVNTLVLAFHGNLLYEATILSIDREPGQERAHA
YLVHFHGWKKSWDEKAVQATQPSENERENRQQTEKSNSNASSPSQLFQIP
PGLQRQLVDDWDAITRENRLVPLPRPLTVQALLQKWVAGRRQSSDKAARE
VAEGLQIYFDATLPMILLYHFERQQYRNHVEKSDKPPSAIYGPEHLLRLL
FKLPFILEEGPIEREKLESIAEKVNELAKYMQKHGKALFQSEYDPAPESY
IRESGECQ*
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mRNA from alignment at tig00000866_pilon:26264..27129+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7542.t1 ID=Ggra7542.t1|Name=Ggra7542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=866bp|location=Sequence derived from alignment at tig00000866_pilon:26264..27129+ (Gracilaria gracilis GNS1m male)
ATGGCCAAGCTACCGGACCACGACCGTCCGATTCCATCTGATACGGACTT
CGAGGTTAATACACTTGTGCTGGCATTTCACGGCAACTTGTTGTACGAAG
CCACTATCTTGAGCATAGACCGCGAACCCGGTCAGGAACGCGCTCACGCG
TACTTGGTTCACTTTCACGGGTGGAAGAAGTCATGGGACGAAAAAGTACC
CGCCAACCATGCGTTTCAACACAATGACGATAATTTGTTGATTGCGCATC
GCTTGCTAGCTGGTGCAAATCGGATGCGTAACAGGCCGTACAAGCGACAC
AGCCTTCGGAAAACGAGCGGGAGAATAGGCAGCAAACGGAGAAGAGTAAC
TCAAACGCGTCGTCTCCAAGCCAGCTTTTCCAAATTCCGCCGGGTTTGCA
GAGACAGCTGGTTGATGACTGGGATGCAATTACAAGAGAAAACAGACTTG
TACCTTTACCACGCCCACTCACAGTTCAAGCTCTCTTGCAGAAATGGGTT
GCAGGGAGACGCCAGTCGTCCGATAAAGCCGCTCGAGAGGTTGCTGAAGG
TCTGCAGATATATTTCGATGCTACACTTCCAATGATACTGCTTTATCATT
TTGAGAGGCAGCAATACAGGAACCATGTTGAGAAGTCTGACAAACCGCCC
AGTGCCATCTACGGACCTGAACATTTACTGCGTCTACTGTTCAAACTTCC
TTTTATTCTAGAAGAAGGCCCTATCGAGCGAGAGAAATTGGAGTCTATAG
CGGAGAAGGTGAACGAACTGGCGAAGTACATGCAAAAACACGGCAAGGCG
TTGTTTCAAAGCGAATACGACCCTGCTCCGGAATCGTATATCAGAGAGAG
TGGCGAATGTCAGTGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:26264..27129+

>Ggra7542.t1 ID=Ggra7542.t1|Name=Ggra7542.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=777bp|location=Sequence derived from alignment at tig00000866_pilon:26264..27129+ (Gracilaria gracilis GNS1m male)
ATGGCCAAGCTACCGGACCACGACCGTCCGATTCCATCTGATACGGACTT
CGAGGTTAATACACTTGTGCTGGCATTTCACGGCAACTTGTTGTACGAAG
CCACTATCTTGAGCATAGACCGCGAACCCGGTCAGGAACGCGCTCACGCG
TACTTGGTTCACTTTCACGGGTGGAAGAAGTCATGGGACGAAAAAGCCGT
ACAAGCGACACAGCCTTCGGAAAACGAGCGGGAGAATAGGCAGCAAACGG
AGAAGAGTAACTCAAACGCGTCGTCTCCAAGCCAGCTTTTCCAAATTCCG
CCGGGTTTGCAGAGACAGCTGGTTGATGACTGGGATGCAATTACAAGAGA
AAACAGACTTGTACCTTTACCACGCCCACTCACAGTTCAAGCTCTCTTGC
AGAAATGGGTTGCAGGGAGACGCCAGTCGTCCGATAAAGCCGCTCGAGAG
GTTGCTGAAGGTCTGCAGATATATTTCGATGCTACACTTCCAATGATACT
GCTTTATCATTTTGAGAGGCAGCAATACAGGAACCATGTTGAGAAGTCTG
ACAAACCGCCCAGTGCCATCTACGGACCTGAACATTTACTGCGTCTACTG
TTCAAACTTCCTTTTATTCTAGAAGAAGGCCCTATCGAGCGAGAGAAATT
GGAGTCTATAGCGGAGAAGGTGAACGAACTGGCGAAGTACATGCAAAAAC
ACGGCAAGGCGTTGTTTCAAAGCGAATACGACCCTGCTCCGGAATCGTAT
ATCAGAGAGAGTGGCGAATGTCAGTGA
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