Ggra7540.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7540.t1
Unique NameGgra7540.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length403
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000866_piloncontigtig00000866_pilon:22965..24173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703047.1
PFAMsRabGAP-TBC
Max annot lvl2759|Eukaryota
KEGG koko:K20360
Evalue3.4e-37
EggNOG OGsKOG1092@1|root,KOG1092@2759|Eukaryota
Descriptionregulation of vesicle fusion
COG categoryT
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7540Ggra7540Gracilaria gracilis GNS1m malegenetig00000866_pilon 22965..24173 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7540.t1.start1Ggra7540.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000866_pilon 22965..22967 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7540.t1.CDS1Ggra7540.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000866_pilon 22965..24173 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7540.t1.exon1Ggra7540.t1.exon1Gracilaria gracilis GNS1m maleexontig00000866_pilon 22965..24173 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7540.t1.stop1Ggra7540.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000866_pilon 24171..24173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7540.t1Ggra7540.t1Gracilaria gracilis GNS1m malepolypeptidetig00000866_pilon 22965..24173 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7540.t1 ID=Ggra7540.t1|Name=Ggra7540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=403bp
MLPPSLSQPLVLTRVAAPMPLALRVHMQQHQQQPSSSACRSPPPPPPPPP
PPLEADLHTREFHVLLDADAAVDETKLRRAASSGVPPHMRQRVWKLLLGV
SSFDTADDLALHLNRTHSYNAFSAAIDPDDYIPSRIRRVLKRSRTAYQPL
AIHDRRVRHGSSSGESYDGEDDDDDSVDAHRPPTGLSSSRNLSLTSSTYA
KPAQRKRHHVVDRQVQSKFIRVITTYLETAPPDVQFHDDMVYLCAPFIEI
MPTEADAFHAFTALMRTCQHLYTEQGLKEAVADFNLMFRDMHPILYDKFV
VEEVDMNRFVCQWLRGLLVHQLPRRCLLRLWDSYFANLARDTLALHPYVC
LVFIELLDQELEECDDSEHILSVLGKLPATDIDHVIAHAHTARERLREKG
VV*
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spliced messenger RNA

>Ggra7540.t1 ID=Ggra7540.t1|Name=Ggra7540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000866_pilon:22965..24173+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCCGCCGTCGCTTTCACAGCCGCTTGTTCTCACGCGCGTCGCTGC
TCCCATGCCGCTCGCGCTGCGGGTGCACATgcagcagcaccagcagcagc
CGTCCTCTTCGGCTTGTCGTTcgccgccgccgccaccgccgcccccgccg
cccccgTTGGAAGCTGATTTGCACACGCGCGAGTTTCATGTATTGCTCGA
TGCCGATGCCGCCGTCGATGAGACCAAGCTTCGTCGCGCTGCTTCGTCCG
GTGTGCCGCCACACATGCGCCAGCGTGTGTGGAAGCTGCTGCTGGGCGTG
TCGTCGTTTGATACTGCTGATGACCTTGCGCTGCACCTCAACCGCACCCA
CTCATACAACGCATTCAGCGCTGCCATCGATCCCGATGATTACATCCCCA
GTCGCATTCGCCGTGTGCTGAAGAGGTCCCGCACTGCGTATCAGCCGCTT
GCCATTCATGACCGTCGAGTGCGCCACGGCTCTTCGAGTGGTGAAAGTTA
TGATGGCGAAGACGACGATGACGATTCTGTCGACGCTCACCGCCCACCTA
CCGGCCTATCCTCCTCGCGCAATTTGTCGCTCACCTCCTCCACTTATGCC
AAGCCCGCGCAGCGAAAGCGACACCATGTTGTAGATCGTCAAGTCCAGTC
AAAGTTCATCCGCGTTATCACCACCTATCTTGAGACAGCCCCCCCTGACG
TACAGTTTCACGACGACATGGTGTATCTCTGTGCGCCATTCATCGAAATC
ATGCCCACCGAGGCTGACGCTTTTCACGCCTTTACTGCTCTGATGAGAAC
ATGTCAACACCTGTACACGGAACAGGGTCTCAAGGAAGCTGTTGCTGACT
TCAATCTCATGTTCCGAGACATGCACCCCATCCTGTATGACAAGTTTGTC
GTCGAAGAGGTTGATATGAATCGTTTCGTATGCCAATGGTTACGCGGTCT
GCTGGTTCATCAACTACCACGTCGATGCTTGCTTCGCCTGTGGGATTCCT
ATTTTGCTAATCTTGCAAGAGATACTCTTGCTTTACATCCATACGTTTGC
CTCGTCTTCATCGAACTTCTGGATCAGGAACTGGAAGAGTGCGACGACTC
TGAGCACATTCTAAGTGTTCTTGGAAAGTTACCGGCCACAGATATCGATC
ACGTAATTGCTCATGCTCATACTGCAAGAGAACGGCTTCGGGAAAAAGGC
GTCGTGTGA
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protein sequence of Ggra7540.t1

>Ggra7540.t1 ID=Ggra7540.t1|Name=Ggra7540.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=403bp
MLPPSLSQPLVLTRVAAPMPLALRVHMQQHQQQPSSSACRSPPPPPPPPP
PPLEADLHTREFHVLLDADAAVDETKLRRAASSGVPPHMRQRVWKLLLGV
SSFDTADDLALHLNRTHSYNAFSAAIDPDDYIPSRIRRVLKRSRTAYQPL
AIHDRRVRHGSSSGESYDGEDDDDDSVDAHRPPTGLSSSRNLSLTSSTYA
KPAQRKRHHVVDRQVQSKFIRVITTYLETAPPDVQFHDDMVYLCAPFIEI
MPTEADAFHAFTALMRTCQHLYTEQGLKEAVADFNLMFRDMHPILYDKFV
VEEVDMNRFVCQWLRGLLVHQLPRRCLLRLWDSYFANLARDTLALHPYVC
LVFIELLDQELEECDDSEHILSVLGKLPATDIDHVIAHAHTARERLREKG
VV*
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mRNA from alignment at tig00000866_pilon:22965..24173+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7540.t1 ID=Ggra7540.t1|Name=Ggra7540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000866_pilon:22965..24173+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGCCGTCGCTTTCACAGCCGCTTGTTCTCACGCGCGTCGCTGC
TCCCATGCCGCTCGCGCTGCGGGTGCACATgcagcagcaccagcagcagc
CGTCCTCTTCGGCTTGTCGTTcgccgccgccgccaccgccgcccccgccg
cccccgTTGGAAGCTGATTTGCACACGCGCGAGTTTCATGTATTGCTCGA
TGCCGATGCCGCCGTCGATGAGACCAAGCTTCGTCGCGCTGCTTCGTCCG
GTGTGCCGCCACACATGCGCCAGCGTGTGTGGAAGCTGCTGCTGGGCGTG
TCGTCGTTTGATACTGCTGATGACCTTGCGCTGCACCTCAACCGCACCCA
CTCATACAACGCATTCAGCGCTGCCATCGATCCCGATGATTACATCCCCA
GTCGCATTCGCCGTGTGCTGAAGAGGTCCCGCACTGCGTATCAGCCGCTT
GCCATTCATGACCGTCGAGTGCGCCACGGCTCTTCGAGTGGTGAAAGTTA
TGATGGCGAAGACGACGATGACGATTCTGTCGACGCTCACCGCCCACCTA
CCGGCCTATCCTCCTCGCGCAATTTGTCGCTCACCTCCTCCACTTATGCC
AAGCCCGCGCAGCGAAAGCGACACCATGTTGTAGATCGTCAAGTCCAGTC
AAAGTTCATCCGCGTTATCACCACCTATCTTGAGACAGCCCCCCCTGACG
TACAGTTTCACGACGACATGGTGTATCTCTGTGCGCCATTCATCGAAATC
ATGCCCACCGAGGCTGACGCTTTTCACGCCTTTACTGCTCTGATGAGAAC
ATGTCAACACCTGTACACGGAACAGGGTCTCAAGGAAGCTGTTGCTGACT
TCAATCTCATGTTCCGAGACATGCACCCCATCCTGTATGACAAGTTTGTC
GTCGAAGAGGTTGATATGAATCGTTTCGTATGCCAATGGTTACGCGGTCT
GCTGGTTCATCAACTACCACGTCGATGCTTGCTTCGCCTGTGGGATTCCT
ATTTTGCTAATCTTGCAAGAGATACTCTTGCTTTACATCCATACGTTTGC
CTCGTCTTCATCGAACTTCTGGATCAGGAACTGGAAGAGTGCGACGACTC
TGAGCACATTCTAAGTGTTCTTGGAAAGTTACCGGCCACAGATATCGATC
ACGTAATTGCTCATGCTCATACTGCAAGAGAACGGCTTCGGGAAAAAGGC
GTCGTGTGA
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Coding sequence (CDS) from alignment at tig00000866_pilon:22965..24173+

>Ggra7540.t1 ID=Ggra7540.t1|Name=Ggra7540.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1209bp|location=Sequence derived from alignment at tig00000866_pilon:22965..24173+ (Gracilaria gracilis GNS1m male)
ATGCTGCCGCCGTCGCTTTCACAGCCGCTTGTTCTCACGCGCGTCGCTGC
TCCCATGCCGCTCGCGCTGCGGGTGCACATgcagcagcaccagcagcagc
CGTCCTCTTCGGCTTGTCGTTcgccgccgccgccaccgccgcccccgccg
cccccgTTGGAAGCTGATTTGCACACGCGCGAGTTTCATGTATTGCTCGA
TGCCGATGCCGCCGTCGATGAGACCAAGCTTCGTCGCGCTGCTTCGTCCG
GTGTGCCGCCACACATGCGCCAGCGTGTGTGGAAGCTGCTGCTGGGCGTG
TCGTCGTTTGATACTGCTGATGACCTTGCGCTGCACCTCAACCGCACCCA
CTCATACAACGCATTCAGCGCTGCCATCGATCCCGATGATTACATCCCCA
GTCGCATTCGCCGTGTGCTGAAGAGGTCCCGCACTGCGTATCAGCCGCTT
GCCATTCATGACCGTCGAGTGCGCCACGGCTCTTCGAGTGGTGAAAGTTA
TGATGGCGAAGACGACGATGACGATTCTGTCGACGCTCACCGCCCACCTA
CCGGCCTATCCTCCTCGCGCAATTTGTCGCTCACCTCCTCCACTTATGCC
AAGCCCGCGCAGCGAAAGCGACACCATGTTGTAGATCGTCAAGTCCAGTC
AAAGTTCATCCGCGTTATCACCACCTATCTTGAGACAGCCCCCCCTGACG
TACAGTTTCACGACGACATGGTGTATCTCTGTGCGCCATTCATCGAAATC
ATGCCCACCGAGGCTGACGCTTTTCACGCCTTTACTGCTCTGATGAGAAC
ATGTCAACACCTGTACACGGAACAGGGTCTCAAGGAAGCTGTTGCTGACT
TCAATCTCATGTTCCGAGACATGCACCCCATCCTGTATGACAAGTTTGTC
GTCGAAGAGGTTGATATGAATCGTTTCGTATGCCAATGGTTACGCGGTCT
GCTGGTTCATCAACTACCACGTCGATGCTTGCTTCGCCTGTGGGATTCCT
ATTTTGCTAATCTTGCAAGAGATACTCTTGCTTTACATCCATACGTTTGC
CTCGTCTTCATCGAACTTCTGGATCAGGAACTGGAAGAGTGCGACGACTC
TGAGCACATTCTAAGTGTTCTTGGAAAGTTACCGGCCACAGATATCGATC
ACGTAATTGCTCATGCTCATACTGCAAGAGAACGGCTTCGGGAAAAAGGC
GTCGTGTGA
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