Ggra7531.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7531.t1
Unique NameGgra7531.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:317672..318361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog749414.SBI_07764
PFAMsDUF1963
Max annot lvl201174|Actinobacteria
Evalue7.36e-34
EggNOG OGsCOG3878@1|root,COG3878@2|Bacteria,2GNAB@201174|Actinobacteria
DescriptionProtein conserved in bacteria
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7531Ggra7531Gracilaria gracilis GNS1m malegenetig00000102_pilon 317672..318361 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7531.t1.start1Ggra7531.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 317672..317674 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7531.t1.CDS1Ggra7531.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 317672..318361 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7531.t1.exon1Ggra7531.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 317672..318361 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7531.t1.stop1Ggra7531.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 318359..318361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7531.t1Ggra7531.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 317672..318361 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7531.t1 ID=Ggra7531.t1|Name=Ggra7531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=230bp
MVPVIQLRKVDVPELGFPEAKNLFQLLWCPDEYHEDTNYGPYPRCVWRHV
QHEDGTELLQPDQVPRPTPLTDRFAIPRPCAVHPERMEEYPAYQELEQIS
DTSAEQIDSWVAENAEQDLVALGELGLEGDDKIYEECWGACPNTKVGGWV
YWTHDVSLCTCTECGNKMEHLLSISSLEYGGGPVSRWYPIDEPREQSREG
TEMWLGDSERFVMFVCRACYHFPIRGKLG*
back to top

spliced messenger RNA

>Ggra7531.t1 ID=Ggra7531.t1|Name=Ggra7531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000102_pilon:317672..318361+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCGGTGATACAGCTGAGGAAGGTCGACGTACCAGAACTTGGGTT
TCCGGAAGCAAAGAACCTGTTTCAGCTTTTGTGGTGTCCGGACGAGTACC
ACGAGGACACGAACTATGGGCCGTATCCCCGTTGCGTTTGGCGACATGTT
CAACATGAGGACGGTACAGAGCTTTTGCAACCCGACCAAGTGCCTCGACC
TACTCCACTCACAGATAGGTTTGCGATCCCAAGACCGTGTGCAGTGCACC
CCGAACGCATGGAGGAGTATCCTGCTTATCAGGAGCTGGAGCAGATATCG
GATACTTCTGCGGAACAGATAGACAGCTGGGTTGCTGAGAATGCGGAGCA
GGACTTGGTGGCACTCGGGGAGCTTGGTTTGGAAGGCGATGATAAGATTT
ATGAAGAATGCTGGGGTGCTTGCCCAAACACCAAGGTAGGAGGGTGGGTG
TACTGGACGCACGACGTTAGTTTGTGTACATGCACTGAATGTGGGAACAA
AATGGAACACCTCCTTTCTATATCGTCTTTGGAATATGGCGGTGGGCCGG
TGTCGAGATGGTACCCGATAGACGAACCGCGAGAGCAATCGCGTGAGGGA
ACCGAAATGTGGCTGGGTGACTCTGAAAGGTTTGTGATGTTTGTTTGCAG
AGCATGCTATCACTTTCCTATCAGGGGAAAACTGGGGTAG
back to top

protein sequence of Ggra7531.t1

>Ggra7531.t1 ID=Ggra7531.t1|Name=Ggra7531.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=230bp
MVPVIQLRKVDVPELGFPEAKNLFQLLWCPDEYHEDTNYGPYPRCVWRHV
QHEDGTELLQPDQVPRPTPLTDRFAIPRPCAVHPERMEEYPAYQELEQIS
DTSAEQIDSWVAENAEQDLVALGELGLEGDDKIYEECWGACPNTKVGGWV
YWTHDVSLCTCTECGNKMEHLLSISSLEYGGGPVSRWYPIDEPREQSREG
TEMWLGDSERFVMFVCRACYHFPIRGKLG*
back to top

mRNA from alignment at tig00000102_pilon:317672..318361+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7531.t1 ID=Ggra7531.t1|Name=Ggra7531.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000102_pilon:317672..318361+ (Gracilaria gracilis GNS1m male)
ATGGTGCCGGTGATACAGCTGAGGAAGGTCGACGTACCAGAACTTGGGTT
TCCGGAAGCAAAGAACCTGTTTCAGCTTTTGTGGTGTCCGGACGAGTACC
ACGAGGACACGAACTATGGGCCGTATCCCCGTTGCGTTTGGCGACATGTT
CAACATGAGGACGGTACAGAGCTTTTGCAACCCGACCAAGTGCCTCGACC
TACTCCACTCACAGATAGGTTTGCGATCCCAAGACCGTGTGCAGTGCACC
CCGAACGCATGGAGGAGTATCCTGCTTATCAGGAGCTGGAGCAGATATCG
GATACTTCTGCGGAACAGATAGACAGCTGGGTTGCTGAGAATGCGGAGCA
GGACTTGGTGGCACTCGGGGAGCTTGGTTTGGAAGGCGATGATAAGATTT
ATGAAGAATGCTGGGGTGCTTGCCCAAACACCAAGGTAGGAGGGTGGGTG
TACTGGACGCACGACGTTAGTTTGTGTACATGCACTGAATGTGGGAACAA
AATGGAACACCTCCTTTCTATATCGTCTTTGGAATATGGCGGTGGGCCGG
TGTCGAGATGGTACCCGATAGACGAACCGCGAGAGCAATCGCGTGAGGGA
ACCGAAATGTGGCTGGGTGACTCTGAAAGGTTTGTGATGTTTGTTTGCAG
AGCATGCTATCACTTTCCTATCAGGGGAAAACTGGGGTAG
back to top

Coding sequence (CDS) from alignment at tig00000102_pilon:317672..318361+

>Ggra7531.t1 ID=Ggra7531.t1|Name=Ggra7531.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000102_pilon:317672..318361+ (Gracilaria gracilis GNS1m male)
ATGGTGCCGGTGATACAGCTGAGGAAGGTCGACGTACCAGAACTTGGGTT
TCCGGAAGCAAAGAACCTGTTTCAGCTTTTGTGGTGTCCGGACGAGTACC
ACGAGGACACGAACTATGGGCCGTATCCCCGTTGCGTTTGGCGACATGTT
CAACATGAGGACGGTACAGAGCTTTTGCAACCCGACCAAGTGCCTCGACC
TACTCCACTCACAGATAGGTTTGCGATCCCAAGACCGTGTGCAGTGCACC
CCGAACGCATGGAGGAGTATCCTGCTTATCAGGAGCTGGAGCAGATATCG
GATACTTCTGCGGAACAGATAGACAGCTGGGTTGCTGAGAATGCGGAGCA
GGACTTGGTGGCACTCGGGGAGCTTGGTTTGGAAGGCGATGATAAGATTT
ATGAAGAATGCTGGGGTGCTTGCCCAAACACCAAGGTAGGAGGGTGGGTG
TACTGGACGCACGACGTTAGTTTGTGTACATGCACTGAATGTGGGAACAA
AATGGAACACCTCCTTTCTATATCGTCTTTGGAATATGGCGGTGGGCCGG
TGTCGAGATGGTACCCGATAGACGAACCGCGAGAGCAATCGCGTGAGGGA
ACCGAAATGTGGCTGGGTGACTCTGAAAGGTTTGTGATGTTTGTTTGCAG
AGCATGCTATCACTTTCCTATCAGGGGAAAACTGGGGTAG
back to top