Ggra7528.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7528.t1
Unique NameGgra7528.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:287711..288796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ19415
PFAMsLCM
Max annot lvl35493|Streptophyta
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K15451
KEGG ReactionR10586,R10587
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016740,GO:0016741,GO:0023051,GO:0023057,GO:0032259,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:1900457,GO:1900458
Evalue2.45e-31
EggNOG OGsKOG2918@1|root,KOG2918@2759|Eukaryota,37Q19@33090|Viridiplantae,3GDYW@35493|Streptophyta
EC2.1.1.290,2.3.1.231
Descriptionleucine carboxyl methyltransferase
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7528Ggra7528Gracilaria gracilis GNS1m malegenetig00000102_pilon 287711..288796 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7528.t1.start1Ggra7528.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 287711..287713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7528.t1.CDS1Ggra7528.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 287711..288796 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7528.t1.exon1Ggra7528.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 287711..288796 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7528.t1.stop1Ggra7528.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 288794..288796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7528.t1Ggra7528.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 287711..288796 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7528.t1 ID=Ggra7528.t1|Name=Ggra7528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MESSNLESLTQSSNIAFLCYLSAVEKGFIYDPHLKQFKRRYQQMFVKDEL
PQEIYPCGALSHRNTFARVLVKRRALLEFLKQDFIKEAQIISLGAGFDSF
AFQIMAEADSHPPLRYVELDLSDVVSDKIFIAQDVMCAGNLFDQCEITKD
RVCASLRVPNRDTASSYVLSVCDLRKIETLESTLREAKVDPCKPTLVLAE
VMMVYMSPELSDALIRFFADWLQGPRCFANIEHIISEKAFASDMINIFSN
LDIPLLGLRKYHSLQLQQRRFQHLGWSHVTACTLLHSLLTHIGPTKYGEL
NQIEILKDPLLSEKMLSHYAVVVAAAGFPNVEAFLASAGGKNRNDNSSDG
VLQHSTQRSST*
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spliced messenger RNA

>Ggra7528.t1 ID=Ggra7528.t1|Name=Ggra7528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000102_pilon:287711..288796+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGTAGTAATCTTGAGTCTCTTACGCAATCCAGTAACATTGCGTT
CTTGTGCTACCTCTCTGCCGTCGAAAAAGGTTTCATTTATGACCCACATC
TCAAACAGTTCAAACGACGCTATCAGCAAATGTTCGTCAAAGACGAGTTG
CCGCAAGAAATTTATCCATGTGGCGCTCTCTCGCATCGTAATACGTTCGC
CCGAGTTCTTGTCAAGCGAAGGGCGCTCCTAGAATTTCTCAAACAGGACT
TCATCAAGGAAGCCCAGATAATCTCTTTGGGAGCCGGATTCGATTCTTTT
GCCTTTCAAATTATGGCAGAAGCAGATTCGCACCCGCCCCTTCGCTATGT
CGAGCTCGACCTCAGTGATGTTGTAAGCGATAAAATATTCATCGCACAGG
ACGTTATGTGTGCTGGAAACCTTTTTGATCAATGTGAAATAACCAAGGAC
CGAGTTTGCGCCTCATTGCGCGTTCCGAATCGTGACACAGCTTCAAGCTA
CGTGTTGTCTGTGTGTGACCTTCGCAAGATAGAAACACTTGAGTCAACGC
TTAGAGAGGCGAAAGTTGACCCATGTAAGCCTACACTGGTGCTCGCGGAG
GTGATGATGGTTTACATGTCACCAGAGCTGTCCGACGCGTTGATTAGATT
TTTTGCTGACTGGCTCCAGGGACCACGCTGCTTCGCCAACATTGAACATA
TCATCTCTGAGAAAGCATTTGCTAGTGACATGATCAACATTTTCTCGAAT
TTAGACATTCCTCTCTTGGGACTTCGAAAGTATCACAGTCTCCAATTGCA
GCAGAGACGTTTCCAACACCTTGGATGGTCCCACGTCACTGCATGTACCC
TACTGCATTCTCTCCTGACACACATAGGCCCAACTAAATATGGGGAGTTG
AATCAGATTGAGATTTTGAAAGACCCCCTGCTCTCGGAGAAGATGCTTTC
ACACTACGCAGTAGTCGTCGCAGCAGCTGGTTTCCCAAATGTCGAGGCGT
TTTTGGCATCTGCAGGAGGCAAGAACAGAAATGATAACTCCAGCGATGGA
GTTCTACAACACAGTACGCAGCGCTCCTCGACCTGA
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protein sequence of Ggra7528.t1

>Ggra7528.t1 ID=Ggra7528.t1|Name=Ggra7528.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MESSNLESLTQSSNIAFLCYLSAVEKGFIYDPHLKQFKRRYQQMFVKDEL
PQEIYPCGALSHRNTFARVLVKRRALLEFLKQDFIKEAQIISLGAGFDSF
AFQIMAEADSHPPLRYVELDLSDVVSDKIFIAQDVMCAGNLFDQCEITKD
RVCASLRVPNRDTASSYVLSVCDLRKIETLESTLREAKVDPCKPTLVLAE
VMMVYMSPELSDALIRFFADWLQGPRCFANIEHIISEKAFASDMINIFSN
LDIPLLGLRKYHSLQLQQRRFQHLGWSHVTACTLLHSLLTHIGPTKYGEL
NQIEILKDPLLSEKMLSHYAVVVAAAGFPNVEAFLASAGGKNRNDNSSDG
VLQHSTQRSST*
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mRNA from alignment at tig00000102_pilon:287711..288796+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7528.t1 ID=Ggra7528.t1|Name=Ggra7528.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000102_pilon:287711..288796+ (Gracilaria gracilis GNS1m male)
ATGGAAAGTAGTAATCTTGAGTCTCTTACGCAATCCAGTAACATTGCGTT
CTTGTGCTACCTCTCTGCCGTCGAAAAAGGTTTCATTTATGACCCACATC
TCAAACAGTTCAAACGACGCTATCAGCAAATGTTCGTCAAAGACGAGTTG
CCGCAAGAAATTTATCCATGTGGCGCTCTCTCGCATCGTAATACGTTCGC
CCGAGTTCTTGTCAAGCGAAGGGCGCTCCTAGAATTTCTCAAACAGGACT
TCATCAAGGAAGCCCAGATAATCTCTTTGGGAGCCGGATTCGATTCTTTT
GCCTTTCAAATTATGGCAGAAGCAGATTCGCACCCGCCCCTTCGCTATGT
CGAGCTCGACCTCAGTGATGTTGTAAGCGATAAAATATTCATCGCACAGG
ACGTTATGTGTGCTGGAAACCTTTTTGATCAATGTGAAATAACCAAGGAC
CGAGTTTGCGCCTCATTGCGCGTTCCGAATCGTGACACAGCTTCAAGCTA
CGTGTTGTCTGTGTGTGACCTTCGCAAGATAGAAACACTTGAGTCAACGC
TTAGAGAGGCGAAAGTTGACCCATGTAAGCCTACACTGGTGCTCGCGGAG
GTGATGATGGTTTACATGTCACCAGAGCTGTCCGACGCGTTGATTAGATT
TTTTGCTGACTGGCTCCAGGGACCACGCTGCTTCGCCAACATTGAACATA
TCATCTCTGAGAAAGCATTTGCTAGTGACATGATCAACATTTTCTCGAAT
TTAGACATTCCTCTCTTGGGACTTCGAAAGTATCACAGTCTCCAATTGCA
GCAGAGACGTTTCCAACACCTTGGATGGTCCCACGTCACTGCATGTACCC
TACTGCATTCTCTCCTGACACACATAGGCCCAACTAAATATGGGGAGTTG
AATCAGATTGAGATTTTGAAAGACCCCCTGCTCTCGGAGAAGATGCTTTC
ACACTACGCAGTAGTCGTCGCAGCAGCTGGTTTCCCAAATGTCGAGGCGT
TTTTGGCATCTGCAGGAGGCAAGAACAGAAATGATAACTCCAGCGATGGA
GTTCTACAACACAGTACGCAGCGCTCCTCGACCTGA
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Coding sequence (CDS) from alignment at tig00000102_pilon:287711..288796+

>Ggra7528.t1 ID=Ggra7528.t1|Name=Ggra7528.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000102_pilon:287711..288796+ (Gracilaria gracilis GNS1m male)
ATGGAAAGTAGTAATCTTGAGTCTCTTACGCAATCCAGTAACATTGCGTT
CTTGTGCTACCTCTCTGCCGTCGAAAAAGGTTTCATTTATGACCCACATC
TCAAACAGTTCAAACGACGCTATCAGCAAATGTTCGTCAAAGACGAGTTG
CCGCAAGAAATTTATCCATGTGGCGCTCTCTCGCATCGTAATACGTTCGC
CCGAGTTCTTGTCAAGCGAAGGGCGCTCCTAGAATTTCTCAAACAGGACT
TCATCAAGGAAGCCCAGATAATCTCTTTGGGAGCCGGATTCGATTCTTTT
GCCTTTCAAATTATGGCAGAAGCAGATTCGCACCCGCCCCTTCGCTATGT
CGAGCTCGACCTCAGTGATGTTGTAAGCGATAAAATATTCATCGCACAGG
ACGTTATGTGTGCTGGAAACCTTTTTGATCAATGTGAAATAACCAAGGAC
CGAGTTTGCGCCTCATTGCGCGTTCCGAATCGTGACACAGCTTCAAGCTA
CGTGTTGTCTGTGTGTGACCTTCGCAAGATAGAAACACTTGAGTCAACGC
TTAGAGAGGCGAAAGTTGACCCATGTAAGCCTACACTGGTGCTCGCGGAG
GTGATGATGGTTTACATGTCACCAGAGCTGTCCGACGCGTTGATTAGATT
TTTTGCTGACTGGCTCCAGGGACCACGCTGCTTCGCCAACATTGAACATA
TCATCTCTGAGAAAGCATTTGCTAGTGACATGATCAACATTTTCTCGAAT
TTAGACATTCCTCTCTTGGGACTTCGAAAGTATCACAGTCTCCAATTGCA
GCAGAGACGTTTCCAACACCTTGGATGGTCCCACGTCACTGCATGTACCC
TACTGCATTCTCTCCTGACACACATAGGCCCAACTAAATATGGGGAGTTG
AATCAGATTGAGATTTTGAAAGACCCCCTGCTCTCGGAGAAGATGCTTTC
ACACTACGCAGTAGTCGTCGCAGCAGCTGGTTTCCCAAATGTCGAGGCGT
TTTTGGCATCTGCAGGAGGCAAGAACAGAAATGATAACTCCAGCGATGGA
GTTCTACAACACAGTACGCAGCGCTCCTCGACCTGA
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