Ggra7510.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7510.t1
Unique NameGgra7510.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:239206..240309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7510Ggra7510Gracilaria gracilis GNS1m malegenetig00000102_pilon 239206..240309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7510.t1Ggra7510.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 239206..240309 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7510.t1.start1Ggra7510.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 239206..239208 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7510.t1.CDS1Ggra7510.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 239206..239471 +
Ggra7510.t1.CDS2Ggra7510.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000102_pilon 239637..240309 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7510.t1.exon1Ggra7510.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 239206..239471 +
Ggra7510.t1.exon2Ggra7510.t1.exon2Gracilaria gracilis GNS1m maleexontig00000102_pilon 239637..240309 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7510.t1.intron1Ggra7510.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000102_pilon 239472..239636 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7510.t1.stop1Ggra7510.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 240307..240309 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7510.t1 ID=Ggra7510.t1|Name=Ggra7510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=313bp
MSLHSETSLKDVLGNNIRDGFTLMPRVSEENAWSAVETNGMDDLVNREYA
STAAGGAPQNLGFYALSYRHNSPESGTTWLLKSQISELKEIMSEDLQTRG
WISMERALAHRRHGSLYWSQKLKKVVRGKPTHRIDAVQLLIERGVALNHD
FHFGRPGDQEEVRDVLMDCFVMQVPQLDFGWSNPNGGNVWICKNKASAND
LWLAAYHWNTTYGVLQYHSWVHRQMDSKTTWYYIEREDKRFLLAVYKNRN
DHPLRVTLAKSGKGSQLVARFSEKIYNPFRIGMKALLISLFGSADYVWKK
TGDIQLAGYREF*
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spliced messenger RNA

>Ggra7510.t1 ID=Ggra7510.t1|Name=Ggra7510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=939bp|location=Sequence derived from alignment at tig00000102_pilon:239206..240309+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTGCACTCAGAGACCAGCCTCAAAGATGTTCTCGGTAATAACAT
TCGTGATGGATTTACTTTGATGCCACGAGTTTCAGAAGAAAATGCGTGGT
CCGCCGTTGAAACAAATGGAATGGATGATCTTGTCAACAGGGAATACGCA
AGCACTGCTGCAGGGGGAGCTCCACAAAACCTGGGCTTCTATGCTCTGTC
CTATCGTCATAATAGTCCAGAATCTGGAACAACCTGGCTCCTCAAGTCTC
AAATATCCGAGCTAAAGGAGATCATGTCAGAGGATCTCCAGACGAGGGGA
TGGATAAGTATGGAAAGAGCTTTGGCACATCGACGTCACGGCAGCTTATA
CTGGAGTCAAAAATTGAAAAAGGTAGTTCGAGGAAAACCAACGCACCGTA
TTGACGCTGTTCAGCTTTTGATAGAAAGAGGCGTTGCTCTCAACCATGAC
TTTCATTTTGGAAGACCAGGAGATCAAGAAGAAGTTCGGGACGTGCTTAT
GGACTGCTTCGTAATGCAAGTGCCCCAGTTAGATTTTGGATGGAGTAACC
CAAATGGTGGAAATGTATGGATATGTAAAAACAAAGCTAGCGCAAACGAT
TTATGGTTAGCTGCATATCATTGGAATACTACGTATGGTGTTCTTCAGTA
TCATAGTTGGGTACATCGCCAGATGGATTCGAAAACAACGTGGTATTACA
TAGAAAGGGAGGATAAGCGGTTTCTGCTCGCCGTGTACAAGAACAGAAAT
GACCATCCTCTGCGTGTGACACTTGCCAAGAGCGGTAAAGGTTCACAACT
TGTAGCTCGTTTCTCTGAGAAGATCTACAACCCGTTCCGAATAGGCATGA
AAGCGCTCTTGATTTCTTTGTTTGGTAGTGCTGATTACGTTTGGAAGAAG
ACGGGAGACATTCAACTCGCAGGCTATCGAGAATTCTGA
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protein sequence of Ggra7510.t1

>Ggra7510.t1 ID=Ggra7510.t1|Name=Ggra7510.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=313bp
MSLHSETSLKDVLGNNIRDGFTLMPRVSEENAWSAVETNGMDDLVNREYA
STAAGGAPQNLGFYALSYRHNSPESGTTWLLKSQISELKEIMSEDLQTRG
WISMERALAHRRHGSLYWSQKLKKVVRGKPTHRIDAVQLLIERGVALNHD
FHFGRPGDQEEVRDVLMDCFVMQVPQLDFGWSNPNGGNVWICKNKASAND
LWLAAYHWNTTYGVLQYHSWVHRQMDSKTTWYYIEREDKRFLLAVYKNRN
DHPLRVTLAKSGKGSQLVARFSEKIYNPFRIGMKALLISLFGSADYVWKK
TGDIQLAGYREF*
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mRNA from alignment at tig00000102_pilon:239206..240309+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7510.t1 ID=Ggra7510.t1|Name=Ggra7510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000102_pilon:239206..240309+ (Gracilaria gracilis GNS1m male)
ATGTCTTTGCACTCAGAGACCAGCCTCAAAGATGTTCTCGGTAATAACAT
TCGTGATGGATTTACTTTGATGCCACGAGTTTCAGAAGAAAATGCGTGGT
CCGCCGTTGAAACAAATGGAATGGATGATCTTGTCAACAGGGAATACGCA
AGCACTGCTGCAGGGGGAGCTCCACAAAACCTGGGCTTCTATGCTCTGTC
CTATCGTCATAATAGTCCAGAATCTGGAACAACCTGGCTCCTCAAGTCTC
AAATATCCGAGCTAAAGTCAGTTTTGCGTTTTCTCGAACCAAAACATTCA
ACCATCTATGTTTGGGTTGACCAAATGTATATGAAATATTTCCGAAGAAG
ACATAGTTCAGAGGGAAACGACTGAGTACGCTACGGGTTGGAAGTCTATA
AGGCTGTTCCAGTTATAGAACTGTTCTCTAGGGAGATCATGTCAGAGGAT
CTCCAGACGAGGGGATGGATAAGTATGGAAAGAGCTTTGGCACATCGACG
TCACGGCAGCTTATACTGGAGTCAAAAATTGAAAAAGGTAGTTCGAGGAA
AACCAACGCACCGTATTGACGCTGTTCAGCTTTTGATAGAAAGAGGCGTT
GCTCTCAACCATGACTTTCATTTTGGAAGACCAGGAGATCAAGAAGAAGT
TCGGGACGTGCTTATGGACTGCTTCGTAATGCAAGTGCCCCAGTTAGATT
TTGGATGGAGTAACCCAAATGGTGGAAATGTATGGATATGTAAAAACAAA
GCTAGCGCAAACGATTTATGGTTAGCTGCATATCATTGGAATACTACGTA
TGGTGTTCTTCAGTATCATAGTTGGGTACATCGCCAGATGGATTCGAAAA
CAACGTGGTATTACATAGAAAGGGAGGATAAGCGGTTTCTGCTCGCCGTG
TACAAGAACAGAAATGACCATCCTCTGCGTGTGACACTTGCCAAGAGCGG
TAAAGGTTCACAACTTGTAGCTCGTTTCTCTGAGAAGATCTACAACCCGT
TCCGAATAGGCATGAAAGCGCTCTTGATTTCTTTGTTTGGTAGTGCTGAT
TACGTTTGGAAGAAGACGGGAGACATTCAACTCGCAGGCTATCGAGAATT
CTGA
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Coding sequence (CDS) from alignment at tig00000102_pilon:239206..240309+

>Ggra7510.t1 ID=Ggra7510.t1|Name=Ggra7510.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=939bp|location=Sequence derived from alignment at tig00000102_pilon:239206..240309+ (Gracilaria gracilis GNS1m male)
ATGTCTTTGCACTCAGAGACCAGCCTCAAAGATGTTCTCGGTAATAACAT
TCGTGATGGATTTACTTTGATGCCACGAGTTTCAGAAGAAAATGCGTGGT
CCGCCGTTGAAACAAATGGAATGGATGATCTTGTCAACAGGGAATACGCA
AGCACTGCTGCAGGGGGAGCTCCACAAAACCTGGGCTTCTATGCTCTGTC
CTATCGTCATAATAGTCCAGAATCTGGAACAACCTGGCTCCTCAAGTCTC
AAATATCCGAGCTAAAGGAGATCATGTCAGAGGATCTCCAGACGAGGGGA
TGGATAAGTATGGAAAGAGCTTTGGCACATCGACGTCACGGCAGCTTATA
CTGGAGTCAAAAATTGAAAAAGGTAGTTCGAGGAAAACCAACGCACCGTA
TTGACGCTGTTCAGCTTTTGATAGAAAGAGGCGTTGCTCTCAACCATGAC
TTTCATTTTGGAAGACCAGGAGATCAAGAAGAAGTTCGGGACGTGCTTAT
GGACTGCTTCGTAATGCAAGTGCCCCAGTTAGATTTTGGATGGAGTAACC
CAAATGGTGGAAATGTATGGATATGTAAAAACAAAGCTAGCGCAAACGAT
TTATGGTTAGCTGCATATCATTGGAATACTACGTATGGTGTTCTTCAGTA
TCATAGTTGGGTACATCGCCAGATGGATTCGAAAACAACGTGGTATTACA
TAGAAAGGGAGGATAAGCGGTTTCTGCTCGCCGTGTACAAGAACAGAAAT
GACCATCCTCTGCGTGTGACACTTGCCAAGAGCGGTAAAGGTTCACAACT
TGTAGCTCGTTTCTCTGAGAAGATCTACAACCCGTTCCGAATAGGCATGA
AAGCGCTCTTGATTTCTTTGTTTGGTAGTGCTGATTACGTTTGGAAGAAG
ACGGGAGACATTCAACTCGCAGGCTATCGAGAATTCTGA
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