Ggra7497.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7497.t1
Unique NameGgra7497.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000102_piloncontigtig00000102_pilon:188876..190016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707040.1
PFAMsADK,Dpy-30
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939,ko:K13800
KEGG ReactionR00127,R00158,R00512,R01547,R01665,R11319,R11891,R11892
KEGG Pathwayko00230,ko00240,ko00730,ko00983,ko01100,ko01110,ko01130,map00230,map00240,map00730,map00983,map01100,map01110,map01130
KEGG ModuleM00049,M00052
Evalue6.27e-73
EggNOG OGsCOG0563@1|root,KOG3079@2759|Eukaryota
EC2.7.4.14,2.7.4.3
Descriptioncytidylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7497Ggra7497Gracilaria gracilis GNS1m malegenetig00000102_pilon 188876..190016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7497.t1Ggra7497.t1Gracilaria gracilis GNS1m malepolypeptidetig00000102_pilon 188876..190016 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7497.t1.start1Ggra7497.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000102_pilon 188876..188878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7497.t1.CDS1Ggra7497.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000102_pilon 188876..189346 +
Ggra7497.t1.CDS2Ggra7497.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000102_pilon 189435..190016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7497.t1.exon1Ggra7497.t1.exon1Gracilaria gracilis GNS1m maleexontig00000102_pilon 188876..189346 +
Ggra7497.t1.exon2Ggra7497.t1.exon2Gracilaria gracilis GNS1m maleexontig00000102_pilon 189435..190016 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7497.t1.intron1Ggra7497.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000102_pilon 189347..189434 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7497.t1.stop1Ggra7497.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000102_pilon 190014..190016 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7497.t1 ID=Ggra7497.t1|Name=Ggra7497.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MTVEVESTLALIKPDAYGKADDIISLIKRNGFVIAEKKTVNLSKERAGHF
YEEHKDRPFYDDLTDFMSSGPVLALILRKEQAIKSWRALMGPTNADRARK
EAPDSIRAKFGTDGSKNATHGSDSPQSASREISFFFPTFHTSTQFNGQDA
KEYLTKTASGAAPVDTAPAKKVYFVLGGPGAGKGTQCAKLVEKYGFDHFS
AGDLLRNEVTSGSEQGKMIGDMIKEGKIVPGEITLNLLRAAIDGSSAPGV
LIDGFPRQLAQAGSFEKEVSDFEFVIFFDCPEEEMERRLLERGKTSGRTD
DNLDSIRKRFRTFMDTSMPVIEYYEAKGKVHRIDATQSIEAVSEIVTNLF
*
back to top

spliced messenger RNA

>Ggra7497.t1 ID=Ggra7497.t1|Name=Ggra7497.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000102_pilon:188876..190016+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGGAAGTTGAGTCTACGTTAGCCCTTATTAAGCCGGATGCTTA
TGGCAAGGCTGACGATATCATTTCTCTCATCAAGCGCAATGGCTTCGTCA
TTGCCGAGAAAAAGACTGTTAATCTCTCAAAAGAACGTGCCGGACACTTC
TACGAGGAACACAAGGATCGCCCGTTCTATGATGACCTGACTGACTTCAT
GTCCTCCGGTCCAGTGCTTGCCCTCATCCTTCGAAAGGAGCAGGCCATCA
AGTCCTGGAGGGCGCTCATGGGACCCACAAATGCCGACAGAGCTCGCAAG
GAAGCACCAGACTCCATCCGCGCCAAATTCGGTACTGACGGCAGCAAGAA
CGCCACCCATGGTTCTGACTCTCCGCAGAGCGCTTCACGCGAAATTTCCT
TCTTCTTCCCCACATTTCACACCTCTACCCAGTTCAACGGCCAGGACGCC
AAGGAGTATCTTACCAAGACCGCATCTGGCGCCGCGCCGGTGGATACCGC
ACCAGCGAAGAAGGTGTACTTTGTGCTCGGTGGCCCGGGCGCCGGCAAGG
GTACACAATGCGCCAAACTTGTCGAAAAGTATGGATTTGACCATTTCTCA
GCCGGTGATTTGCTCCGCAACGAGGTCACCAGCGGCTCTGAACAGGGTAA
GATGATTGGAGATATGATCAAGGAGGGCAAAATCGTACCAGGTGAAATCA
CTCTCAACTTGCTCAGGGCAGCCATCGACGGAAGCAGTGCGCCAGGCGTG
TTGATCGACGGATTTCCGCGTCAATTGGCTCAAGCTGGCTCTTTTGAGAA
GGAGGTGTCTGACTTCGAGTTTGTGATCTTCTTCGACTGTCCGGAGGAAG
AAATGGAGAGACGGCTGTTGGAAAGAGGAAAGACAAGTGGTCGTACTGAT
GATAACCTTGATAGCATTCGCAAGAGGTTCAGGACGTTTATGGACACGTC
AATGCCGGTGATTGAGTACTACGAGGCGAAGGGTAAGGTTCATCGAATTG
ATGCTACGCAGAGCATTGAAGCAGTTTCAGAGATTGTGACCAACCTGTTC
TGA
back to top

protein sequence of Ggra7497.t1

>Ggra7497.t1 ID=Ggra7497.t1|Name=Ggra7497.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MTVEVESTLALIKPDAYGKADDIISLIKRNGFVIAEKKTVNLSKERAGHF
YEEHKDRPFYDDLTDFMSSGPVLALILRKEQAIKSWRALMGPTNADRARK
EAPDSIRAKFGTDGSKNATHGSDSPQSASREISFFFPTFHTSTQFNGQDA
KEYLTKTASGAAPVDTAPAKKVYFVLGGPGAGKGTQCAKLVEKYGFDHFS
AGDLLRNEVTSGSEQGKMIGDMIKEGKIVPGEITLNLLRAAIDGSSAPGV
LIDGFPRQLAQAGSFEKEVSDFEFVIFFDCPEEEMERRLLERGKTSGRTD
DNLDSIRKRFRTFMDTSMPVIEYYEAKGKVHRIDATQSIEAVSEIVTNLF
*
back to top

mRNA from alignment at tig00000102_pilon:188876..190016+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7497.t1 ID=Ggra7497.t1|Name=Ggra7497.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1141bp|location=Sequence derived from alignment at tig00000102_pilon:188876..190016+ (Gracilaria gracilis GNS1m male)
ATGACTGTGGAAGTTGAGTCTACGTTAGCCCTTATTAAGCCGGATGCTTA
TGGCAAGGCTGACGATATCATTTCTCTCATCAAGCGCAATGGCTTCGTCA
TTGCCGAGAAAAAGACTGTTAATCTCTCAAAAGAACGTGCCGGACACTTC
TACGAGGAACACAAGGATCGCCCGTTCTATGATGACCTGACTGACTTCAT
GTCCTCCGGTCCAGTGCTTGCCCTCATCCTTCGAAAGGAGCAGGCCATCA
AGTCCTGGAGGGCGCTCATGGGACCCACAAATGCCGACAGAGCTCGCAAG
GAAGCACCAGACTCCATCCGCGCCAAATTCGGTACTGACGGCAGCAAGAA
CGCCACCCATGGTTCTGACTCTCCGCAGAGCGCTTCACGCGAAATTTCCT
TCTTCTTCCCCACATTTCACACCTCTACCCAGTTCAACGGCCAGGACGCC
AAGGAGTATCTTACCAAGACCGTCACCTCTGCTCACCTCTGCCCTCACCG
AAATGTGTCGTCTCACCCCACCAAACGCCGTCGAATGGCTCGGTCACTAC
TTGTTGAAGGCATCTGGCGCCGCGCCGGTGGATACCGCACCAGCGAAGAA
GGTGTACTTTGTGCTCGGTGGCCCGGGCGCCGGCAAGGGTACACAATGCG
CCAAACTTGTCGAAAAGTATGGATTTGACCATTTCTCAGCCGGTGATTTG
CTCCGCAACGAGGTCACCAGCGGCTCTGAACAGGGTAAGATGATTGGAGA
TATGATCAAGGAGGGCAAAATCGTACCAGGTGAAATCACTCTCAACTTGC
TCAGGGCAGCCATCGACGGAAGCAGTGCGCCAGGCGTGTTGATCGACGGA
TTTCCGCGTCAATTGGCTCAAGCTGGCTCTTTTGAGAAGGAGGTGTCTGA
CTTCGAGTTTGTGATCTTCTTCGACTGTCCGGAGGAAGAAATGGAGAGAC
GGCTGTTGGAAAGAGGAAAGACAAGTGGTCGTACTGATGATAACCTTGAT
AGCATTCGCAAGAGGTTCAGGACGTTTATGGACACGTCAATGCCGGTGAT
TGAGTACTACGAGGCGAAGGGTAAGGTTCATCGAATTGATGCTACGCAGA
GCATTGAAGCAGTTTCAGAGATTGTGACCAACCTGTTCTGA
back to top

Coding sequence (CDS) from alignment at tig00000102_pilon:188876..190016+

>Ggra7497.t1 ID=Ggra7497.t1|Name=Ggra7497.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000102_pilon:188876..190016+ (Gracilaria gracilis GNS1m male)
ATGACTGTGGAAGTTGAGTCTACGTTAGCCCTTATTAAGCCGGATGCTTA
TGGCAAGGCTGACGATATCATTTCTCTCATCAAGCGCAATGGCTTCGTCA
TTGCCGAGAAAAAGACTGTTAATCTCTCAAAAGAACGTGCCGGACACTTC
TACGAGGAACACAAGGATCGCCCGTTCTATGATGACCTGACTGACTTCAT
GTCCTCCGGTCCAGTGCTTGCCCTCATCCTTCGAAAGGAGCAGGCCATCA
AGTCCTGGAGGGCGCTCATGGGACCCACAAATGCCGACAGAGCTCGCAAG
GAAGCACCAGACTCCATCCGCGCCAAATTCGGTACTGACGGCAGCAAGAA
CGCCACCCATGGTTCTGACTCTCCGCAGAGCGCTTCACGCGAAATTTCCT
TCTTCTTCCCCACATTTCACACCTCTACCCAGTTCAACGGCCAGGACGCC
AAGGAGTATCTTACCAAGACCGCATCTGGCGCCGCGCCGGTGGATACCGC
ACCAGCGAAGAAGGTGTACTTTGTGCTCGGTGGCCCGGGCGCCGGCAAGG
GTACACAATGCGCCAAACTTGTCGAAAAGTATGGATTTGACCATTTCTCA
GCCGGTGATTTGCTCCGCAACGAGGTCACCAGCGGCTCTGAACAGGGTAA
GATGATTGGAGATATGATCAAGGAGGGCAAAATCGTACCAGGTGAAATCA
CTCTCAACTTGCTCAGGGCAGCCATCGACGGAAGCAGTGCGCCAGGCGTG
TTGATCGACGGATTTCCGCGTCAATTGGCTCAAGCTGGCTCTTTTGAGAA
GGAGGTGTCTGACTTCGAGTTTGTGATCTTCTTCGACTGTCCGGAGGAAG
AAATGGAGAGACGGCTGTTGGAAAGAGGAAAGACAAGTGGTCGTACTGAT
GATAACCTTGATAGCATTCGCAAGAGGTTCAGGACGTTTATGGACACGTC
AATGCCGGTGATTGAGTACTACGAGGCGAAGGGTAAGGTTCATCGAATTG
ATGCTACGCAGAGCATTGAAGCAGTTTCAGAGATTGTGACCAACCTGTTC
TGA
back to top