Ggra7489.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7489.t1
Unique Name	Ggra7489.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000102_pilon	contig	tig00000102_pilon:172501..173784 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	218851.Aquca_002_00537.1
PFAMs	DHQS
Max annot lvl	35493\|Streptophyta
Evalue	1.1e-67
EggNOG OGs	COG1465@1\|root,2QSUR@2759\|Eukaryota,37NQ2@33090\|Viridiplantae,3G7F2@35493\|Streptophyta
Description	isoform X1
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7489	Ggra7489	Gracilaria gracilis GNS1m male	gene	tig00000102_pilon 172501..173784 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7489.t1.start1	Ggra7489.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000102_pilon 172501..172503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7489.t1.CDS1	Ggra7489.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000102_pilon 172501..173784 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7489.t1.exon1	Ggra7489.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000102_pilon 172501..173784 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7489.t1.stop1	Ggra7489.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000102_pilon 173782..173784 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7489.t1	Ggra7489.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000102_pilon 172501..173784 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000102_pilon:172501..173784+
coding sequence from alignment at tig00000102_pilon:172501..173784+

mRNA sequence

>Ggra7489.t1 ID=Ggra7489.t1|Name=Ggra7489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MLSFLIQNPELPTLKNTANPLHEPISQSRPIPHQYLQTPTIENTMPLAFS
ISTTPFTQSRNGSSSIRLEHKRKRCHHVCISMRTFWVQPETKTALTTSLE
QNITDFIFTDKNFFNECSSIARFNTLLIPDSGHFENGLYSCITCAQDVTN
LLEQAKKYKTIIMDSTDWKIIPAENLIATCQQTQTQILAMVNSTQEARSM
FGMLQVGVDGCILRTDSIEEIISFANLKGEMIDKVGSAIQNLSFATVSDI
RAVNMGERVCIDTCSMLAENEGMLIGSSSQSMCVVLSEAARTAYVPSRPF
RVNAGAVHSYCMLAGGKTKYLAEICAGDEVMIVSDFGKSSRTAVVGRAKI
ESRPLLMIEALVEGDESNRCTLFVQNAETVRLAVVDEDGKGGMQSVSTLQ
IGTRLLLKSDKKARHVGLAIDENIIEK*

spliced messenger RNA

>Ggra7489.t1 ID=Ggra7489.t1|Name=Ggra7489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000102_pilon:172501..173784+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATCCTTCCTTATCCAGAACCCCGAACTACCAACACTCAAGAACAC
GGCTAATCCTCTTCACGAACCAATTTCCCAATCTCGCCCGATACCGCACC
AATACCTTCAAACCCCCACCATTGAGAACACTATGCCTCTCGCCTTCTCA
ATCAGCACAACTCCGTTTACCCAAAGCCGCAATGGTTCATCGTCGATTCG
CCTCGAACACAAACGCAAACGCTGCCACCATGTCTGCATCTCCATGCGCA
CTTTCTGGGTACAACCAGAAACAAAAACAGCACTAACAACCTCTCTTGAA
CAGAACATCACCGACTTCATCTTCACCGACAAGAACTTCTTCAACGAATG
CTCCTCCATCGCACGATTTAACACTTTACTTATTCCAGATTCTGGCCATT
TCGAAAACGGTCTCTACTCATGCATAACGTGTGCGCAGGATGTAACCAAT
CTACTAGAGCAAGCCAAAAAGTACAAAACCATCATCATGGATTCCACAGA
TTGGAAGATCATCCCCGCCGAAAACCTAATAGCCACTTGTCAACAAACAC
AAACTCAGATTCTTGCGATGGTAAATTCTACACAAGAAGCAAGATCCATG
TTCGGAATGCTGCAAGTCGGTGTTGATGGATGTATTCTTCGAACCGATAG
CATAGAAGAGATCATATCCTTTGCAAACTTAAAAGGTGAGATGATAGATA
AAGTAGGCAGCGCGATACAAAATTTATCGTTTGCAACCGTTTCCGACATC
CGTGCCGTCAACATGGGAGAACGAGTGTGTATCGATACATGTTCCATGCT
CGCGGAGAATGAAGGAATGTTGATAGGTTCGTCGTCACAGTCCATGTGTG
TAGTTCTGTCCGAAGCAGCACGAACAGCCTATGTACCAAGCCGCCCATTC
CGCGTTAACGCTGGGGCCGTACATTCATATTGCATGCTCGCTGGAGGAAA
GACAAAGTACCTGGCGGAGATATGTGCCGGTGATGAAGTGATGATAGTAA
GCGATTTTGGAAAGAGTAGTCGGACGGCAGTGGTCGGAAGAGCCAAAATT
GAAAGCAGGCCATTGTTAATGATTGAAGCATTGGTTGAAGGCGATGAAAG
CAACAGGTGTACATTGTTCGTACAAAACGCAGAAACTGTAAGACTGGCTG
TTGTAGATGAGGATGGTAAAGGGGGCATGCAAAGTGTGAGCACGTTGCAA
ATAGGAACGAGACTGTTATTAAAGAGCGATAAGAAAGCACGACACGTCGG
ACTGGCAATCGACGAAAACATAATCGAAAAGTAA

protein sequence of Ggra7489.t1

>Ggra7489.t1 ID=Ggra7489.t1|Name=Ggra7489.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MLSFLIQNPELPTLKNTANPLHEPISQSRPIPHQYLQTPTIENTMPLAFS
ISTTPFTQSRNGSSSIRLEHKRKRCHHVCISMRTFWVQPETKTALTTSLE
QNITDFIFTDKNFFNECSSIARFNTLLIPDSGHFENGLYSCITCAQDVTN
LLEQAKKYKTIIMDSTDWKIIPAENLIATCQQTQTQILAMVNSTQEARSM
FGMLQVGVDGCILRTDSIEEIISFANLKGEMIDKVGSAIQNLSFATVSDI
RAVNMGERVCIDTCSMLAENEGMLIGSSSQSMCVVLSEAARTAYVPSRPF
RVNAGAVHSYCMLAGGKTKYLAEICAGDEVMIVSDFGKSSRTAVVGRAKI
ESRPLLMIEALVEGDESNRCTLFVQNAETVRLAVVDEDGKGGMQSVSTLQ
IGTRLLLKSDKKARHVGLAIDENIIEK*

mRNA from alignment at tig00000102_pilon:172501..173784+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7489.t1 ID=Ggra7489.t1|Name=Ggra7489.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000102_pilon:172501..173784+ (Gracilaria gracilis GNS1m male)
ATGTTATCCTTCCTTATCCAGAACCCCGAACTACCAACACTCAAGAACAC
GGCTAATCCTCTTCACGAACCAATTTCCCAATCTCGCCCGATACCGCACC
AATACCTTCAAACCCCCACCATTGAGAACACTATGCCTCTCGCCTTCTCA
ATCAGCACAACTCCGTTTACCCAAAGCCGCAATGGTTCATCGTCGATTCG
CCTCGAACACAAACGCAAACGCTGCCACCATGTCTGCATCTCCATGCGCA
CTTTCTGGGTACAACCAGAAACAAAAACAGCACTAACAACCTCTCTTGAA
CAGAACATCACCGACTTCATCTTCACCGACAAGAACTTCTTCAACGAATG
CTCCTCCATCGCACGATTTAACACTTTACTTATTCCAGATTCTGGCCATT
TCGAAAACGGTCTCTACTCATGCATAACGTGTGCGCAGGATGTAACCAAT
CTACTAGAGCAAGCCAAAAAGTACAAAACCATCATCATGGATTCCACAGA
TTGGAAGATCATCCCCGCCGAAAACCTAATAGCCACTTGTCAACAAACAC
AAACTCAGATTCTTGCGATGGTAAATTCTACACAAGAAGCAAGATCCATG
TTCGGAATGCTGCAAGTCGGTGTTGATGGATGTATTCTTCGAACCGATAG
CATAGAAGAGATCATATCCTTTGCAAACTTAAAAGGTGAGATGATAGATA
AAGTAGGCAGCGCGATACAAAATTTATCGTTTGCAACCGTTTCCGACATC
CGTGCCGTCAACATGGGAGAACGAGTGTGTATCGATACATGTTCCATGCT
CGCGGAGAATGAAGGAATGTTGATAGGTTCGTCGTCACAGTCCATGTGTG
TAGTTCTGTCCGAAGCAGCACGAACAGCCTATGTACCAAGCCGCCCATTC
CGCGTTAACGCTGGGGCCGTACATTCATATTGCATGCTCGCTGGAGGAAA
GACAAAGTACCTGGCGGAGATATGTGCCGGTGATGAAGTGATGATAGTAA
GCGATTTTGGAAAGAGTAGTCGGACGGCAGTGGTCGGAAGAGCCAAAATT
GAAAGCAGGCCATTGTTAATGATTGAAGCATTGGTTGAAGGCGATGAAAG
CAACAGGTGTACATTGTTCGTACAAAACGCAGAAACTGTAAGACTGGCTG
TTGTAGATGAGGATGGTAAAGGGGGCATGCAAAGTGTGAGCACGTTGCAA
ATAGGAACGAGACTGTTATTAAAGAGCGATAAGAAAGCACGACACGTCGG
ACTGGCAATCGACGAAAACATAATCGAAAAGTAA

Coding sequence (CDS) from alignment at tig00000102_pilon:172501..173784+

>Ggra7489.t1 ID=Ggra7489.t1|Name=Ggra7489.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000102_pilon:172501..173784+ (Gracilaria gracilis GNS1m male)
ATGTTATCCTTCCTTATCCAGAACCCCGAACTACCAACACTCAAGAACAC
GGCTAATCCTCTTCACGAACCAATTTCCCAATCTCGCCCGATACCGCACC
AATACCTTCAAACCCCCACCATTGAGAACACTATGCCTCTCGCCTTCTCA
ATCAGCACAACTCCGTTTACCCAAAGCCGCAATGGTTCATCGTCGATTCG
CCTCGAACACAAACGCAAACGCTGCCACCATGTCTGCATCTCCATGCGCA
CTTTCTGGGTACAACCAGAAACAAAAACAGCACTAACAACCTCTCTTGAA
CAGAACATCACCGACTTCATCTTCACCGACAAGAACTTCTTCAACGAATG
CTCCTCCATCGCACGATTTAACACTTTACTTATTCCAGATTCTGGCCATT
TCGAAAACGGTCTCTACTCATGCATAACGTGTGCGCAGGATGTAACCAAT
CTACTAGAGCAAGCCAAAAAGTACAAAACCATCATCATGGATTCCACAGA
TTGGAAGATCATCCCCGCCGAAAACCTAATAGCCACTTGTCAACAAACAC
AAACTCAGATTCTTGCGATGGTAAATTCTACACAAGAAGCAAGATCCATG
TTCGGAATGCTGCAAGTCGGTGTTGATGGATGTATTCTTCGAACCGATAG
CATAGAAGAGATCATATCCTTTGCAAACTTAAAAGGTGAGATGATAGATA
AAGTAGGCAGCGCGATACAAAATTTATCGTTTGCAACCGTTTCCGACATC
CGTGCCGTCAACATGGGAGAACGAGTGTGTATCGATACATGTTCCATGCT
CGCGGAGAATGAAGGAATGTTGATAGGTTCGTCGTCACAGTCCATGTGTG
TAGTTCTGTCCGAAGCAGCACGAACAGCCTATGTACCAAGCCGCCCATTC
CGCGTTAACGCTGGGGCCGTACATTCATATTGCATGCTCGCTGGAGGAAA
GACAAAGTACCTGGCGGAGATATGTGCCGGTGATGAAGTGATGATAGTAA
GCGATTTTGGAAAGAGTAGTCGGACGGCAGTGGTCGGAAGAGCCAAAATT
GAAAGCAGGCCATTGTTAATGATTGAAGCATTGGTTGAAGGCGATGAAAG
CAACAGGTGTACATTGTTCGTACAAAACGCAGAAACTGTAAGACTGGCTG
TTGTAGATGAGGATGGTAAAGGGGGCATGCAAAGTGTGAGCACGTTGCAA
ATAGGAACGAGACTGTTATTAAAGAGCGATAAGAAAGCACGACACGTCGG
ACTGGCAATCGACGAAAACATAATCGAAAAGTAA