Ggra746.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra746.t1
Unique Name	Ggra746.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	332

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000164_pilon	contig	tig00000164_pilon:54500..55495 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122138.AQUZ01000004_gene1099
Preferred name	dus
PFAMs	Dus
Max annot lvl	201174\|Actinobacteria
GOs	GO:0008150,GO:0010565,GO:0019216,GO:0019217,GO:0019222,GO:0031323,GO:0050789,GO:0050794,GO:0062012,GO:0065007,GO:0080090
Evalue	7.14e-75
EggNOG OGs	COG0042@1\|root,COG0042@2\|Bacteria,2GJ8I@201174\|Actinobacteria,4DNZA@85009\|Propionibacteriales
Description	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
COG category	J

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra746	Ggra746	Gracilaria gracilis GNS1m male	gene	tig00000164_pilon 54500..55495 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra746.t1.start1	Ggra746.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000164_pilon 54500..54502 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra746.t1.CDS1	Ggra746.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000164_pilon 54500..55495 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra746.t1.exon1	Ggra746.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000164_pilon 54500..55495 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra746.t1.stop1	Ggra746.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000164_pilon 55493..55495 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra746.t1	Ggra746.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000164_pilon 54500..55495 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000164_pilon:54500..55495+
coding sequence from alignment at tig00000164_pilon:54500..55495+

mRNA sequence

>Ggra746.t1 ID=Ggra746.t1|Name=Ggra746.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MAAVTNAPFRSLCASYGAKLTVSEMLHADLFVQNRVTPRFYAHETRSVQL
YGTQPAQLARAAHKLVAHHAVQHIDLNFGCPAPKLLRRGGGAALLADLPR
LRRIVHAVVSVAAPLGVPVTAKMRLGYGANITYLRAAQLMEQCGVSAVTL
HSRTAEQAYERGLGRQGWHHIAKLVQHVSIPVFGNGDVFTAADCVHMLRD
TGAAGVVIGRGCLGRPWLFADLLQAMRYGEQRLTIPTFDSVKQIMLSHIK
QCTAWLIVDGVCEQRALCSMRRWFGWYLQGYNGLPNGLLERLYRADTVRR
VEQLLDTVNVHAVWVDVEQVVRERGKLGREG*

spliced messenger RNA

>Ggra746.t1 ID=Ggra746.t1|Name=Ggra746.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000164_pilon:54500..55495+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGTCACCAACGCGCCGTTCCGCTCTCTCTGCGCCTCATACGG
CGCAAAGCTCACTGTGAGCGAGATGCTACACGCCGATCTGTTCGTGCAGA
ACCGCGTCACGCCGCGTTTCTACGCACACGAGACGCGCTCCGTACAACTG
TACGgcacgcagcccgcgcagctcgcgcgcgccgcgcacaagctcgtcgc
gcACCATGCCGTGCAGCACATCGATCTCAACTTTGGTTGCCCCGCGCCCA
AGCTGCTGCGCCGCGGCGGCGGCGCCGCGCTGCTTGCCGACTTGCCGCGC
TTGCGTCGCATCGTGCACGCCGTTGTGTCGGTTGCCGCGCCGCTGGGCGT
GCCCGTCACGGCCAAGATGCGCCTGGGCTACGGTGCCAACATCACCTACC
TGCGCGCGGCACAGTTAATGGAGCAGTGCGGCGTGTCGGCTGTCACGCTG
CATTCGCGCACCGCCGAGCAGGCGTATGAGCGCGGCTTGGGCAGACAGGG
CTGGCACCACATTGCAAAGCTGGTGCAGCATGTGAGCATTCCGGTGTTTG
GCAACGGCGATGTGTTTACTGCTGCCGATTGCGTTCACATGCTGCGTGAC
ACCGGCGCGGCGGGCGTTGTAATTGGGCGCGGCTGCCTCGGTCGCCCGTG
GTTATTTGCCGATCTGCTGCAAGCGATGCGTTATGGCGAGCAGCGCTTGA
CAATTCCCACTTTTGACAGCGTCAAACAGATCATGTTGTCTCATATCAAA
CAATGTACGGCATGGCTCATTGTGGACGGCGTGTGTGAGCAAAGGGCGCT
TTGTTCCATGCGAAGGTGGTTCGGTTGGTATCTACAAGGATATAACGGAC
TTCCGAACGGCTTGTTGGAGCGACTTTACCGTGCCGACACGGTGAGGCGC
GTTGAACAGCTTTTGGACACTGTTAATGTACACGCAGTTTGGGTTGACGT
GGAACAAGTTGTACGTGAGCGAGGCAAGCTGGGACGTGAGGGATGA

protein sequence of Ggra746.t1

>Ggra746.t1 ID=Ggra746.t1|Name=Ggra746.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MAAVTNAPFRSLCASYGAKLTVSEMLHADLFVQNRVTPRFYAHETRSVQL
YGTQPAQLARAAHKLVAHHAVQHIDLNFGCPAPKLLRRGGGAALLADLPR
LRRIVHAVVSVAAPLGVPVTAKMRLGYGANITYLRAAQLMEQCGVSAVTL
HSRTAEQAYERGLGRQGWHHIAKLVQHVSIPVFGNGDVFTAADCVHMLRD
TGAAGVVIGRGCLGRPWLFADLLQAMRYGEQRLTIPTFDSVKQIMLSHIK
QCTAWLIVDGVCEQRALCSMRRWFGWYLQGYNGLPNGLLERLYRADTVRR
VEQLLDTVNVHAVWVDVEQVVRERGKLGREG*

mRNA from alignment at tig00000164_pilon:54500..55495+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra746.t1 ID=Ggra746.t1|Name=Ggra746.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000164_pilon:54500..55495+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTCACCAACGCGCCGTTCCGCTCTCTCTGCGCCTCATACGG
CGCAAAGCTCACTGTGAGCGAGATGCTACACGCCGATCTGTTCGTGCAGA
ACCGCGTCACGCCGCGTTTCTACGCACACGAGACGCGCTCCGTACAACTG
TACGgcacgcagcccgcgcagctcgcgcgcgccgcgcacaagctcgtcgc
gcACCATGCCGTGCAGCACATCGATCTCAACTTTGGTTGCCCCGCGCCCA
AGCTGCTGCGCCGCGGCGGCGGCGCCGCGCTGCTTGCCGACTTGCCGCGC
TTGCGTCGCATCGTGCACGCCGTTGTGTCGGTTGCCGCGCCGCTGGGCGT
GCCCGTCACGGCCAAGATGCGCCTGGGCTACGGTGCCAACATCACCTACC
TGCGCGCGGCACAGTTAATGGAGCAGTGCGGCGTGTCGGCTGTCACGCTG
CATTCGCGCACCGCCGAGCAGGCGTATGAGCGCGGCTTGGGCAGACAGGG
CTGGCACCACATTGCAAAGCTGGTGCAGCATGTGAGCATTCCGGTGTTTG
GCAACGGCGATGTGTTTACTGCTGCCGATTGCGTTCACATGCTGCGTGAC
ACCGGCGCGGCGGGCGTTGTAATTGGGCGCGGCTGCCTCGGTCGCCCGTG
GTTATTTGCCGATCTGCTGCAAGCGATGCGTTATGGCGAGCAGCGCTTGA
CAATTCCCACTTTTGACAGCGTCAAACAGATCATGTTGTCTCATATCAAA
CAATGTACGGCATGGCTCATTGTGGACGGCGTGTGTGAGCAAAGGGCGCT
TTGTTCCATGCGAAGGTGGTTCGGTTGGTATCTACAAGGATATAACGGAC
TTCCGAACGGCTTGTTGGAGCGACTTTACCGTGCCGACACGGTGAGGCGC
GTTGAACAGCTTTTGGACACTGTTAATGTACACGCAGTTTGGGTTGACGT
GGAACAAGTTGTACGTGAGCGAGGCAAGCTGGGACGTGAGGGATGA

Coding sequence (CDS) from alignment at tig00000164_pilon:54500..55495+

>Ggra746.t1 ID=Ggra746.t1|Name=Ggra746.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000164_pilon:54500..55495+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGTCACCAACGCGCCGTTCCGCTCTCTCTGCGCCTCATACGG
CGCAAAGCTCACTGTGAGCGAGATGCTACACGCCGATCTGTTCGTGCAGA
ACCGCGTCACGCCGCGTTTCTACGCACACGAGACGCGCTCCGTACAACTG
TACGgcacgcagcccgcgcagctcgcgcgcgccgcgcacaagctcgtcgc
gcACCATGCCGTGCAGCACATCGATCTCAACTTTGGTTGCCCCGCGCCCA
AGCTGCTGCGCCGCGGCGGCGGCGCCGCGCTGCTTGCCGACTTGCCGCGC
TTGCGTCGCATCGTGCACGCCGTTGTGTCGGTTGCCGCGCCGCTGGGCGT
GCCCGTCACGGCCAAGATGCGCCTGGGCTACGGTGCCAACATCACCTACC
TGCGCGCGGCACAGTTAATGGAGCAGTGCGGCGTGTCGGCTGTCACGCTG
CATTCGCGCACCGCCGAGCAGGCGTATGAGCGCGGCTTGGGCAGACAGGG
CTGGCACCACATTGCAAAGCTGGTGCAGCATGTGAGCATTCCGGTGTTTG
GCAACGGCGATGTGTTTACTGCTGCCGATTGCGTTCACATGCTGCGTGAC
ACCGGCGCGGCGGGCGTTGTAATTGGGCGCGGCTGCCTCGGTCGCCCGTG
GTTATTTGCCGATCTGCTGCAAGCGATGCGTTATGGCGAGCAGCGCTTGA
CAATTCCCACTTTTGACAGCGTCAAACAGATCATGTTGTCTCATATCAAA
CAATGTACGGCATGGCTCATTGTGGACGGCGTGTGTGAGCAAAGGGCGCT
TTGTTCCATGCGAAGGTGGTTCGGTTGGTATCTACAAGGATATAACGGAC
TTCCGAACGGCTTGTTGGAGCGACTTTACCGTGCCGACACGGTGAGGCGC
GTTGAACAGCTTTTGGACACTGTTAATGTACACGCAGTTTGGGTTGACGT
GGAACAAGTTGTACGTGAGCGAGGCAAGCTGGGACGTGAGGGATGA