Ggra744.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra744.t1
Unique Name	Ggra744.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000164_pilon	contig	tig00000164_pilon:51008..52918 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra744	Ggra744	Gracilaria gracilis GNS1m male	gene	tig00000164_pilon 51008..52918 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra744.t1.start1	Ggra744.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000164_pilon 51008..51010 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra744.t1.CDS1	Ggra744.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000164_pilon 51008..52918 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra744.t1.exon1	Ggra744.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000164_pilon 51008..52918 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra744.t1.stop1	Ggra744.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000164_pilon 52916..52918 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra744.t1	Ggra744.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000164_pilon 51008..52918 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000164_pilon:51008..52918+
coding sequence from alignment at tig00000164_pilon:51008..52918+

mRNA sequence

>Ggra744.t1 ID=Ggra744.t1|Name=Ggra744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=637bp
MSPVPSDHSALPKQWAHEMALASSTLSSSQSPPRSPPHTLGGPAFDSQLD
AFLHRFQHQILAARALKDDLDRLESHQHPHYVAKKVAFKRHMEHIRSLFS
TEGEQFVDSLERRNPNLTMAACGQNTIELAQGIERLESAVKEEETKRAAA
ASHPPSSSTLPPPPPPPPNSLQPHLAAITPLSSPDRTAPPVSAVGHPLNN
LSSEETLQLMQSDIQALKLELMRLHRVKVSAASASLPPPYAPGSVSPHAD
TPAFTSSTVSPDAKSVNAPPIPASILANNNVSVVRVTGRSIAPNYVSHLE
QMKTRLQALEKKPLSRRAKSAARLGRTQTMSSMYEARAGDENQNPNVSAM
VTPPRGVRRQHRSVSTTSPVAASKTLLTPPPLQQLRSECSPRTTPSPVRL
ARERASGSPARLYFDAPEDLLSRPQSHAAARDIQRYSLKVSRRFGPNEME
MPAEPRAKSAVTVSPNRRRGAMQEGGKSVGNALTEVAAPLGAPSTIDTTG
SGGRVVEEIEGDMWVRKGVVWKRWRRRYASIVSHPFFGKAICLFSYDSGG
GVISTRSQIVVLANSLCKALREKLEIGGQERFMFVLRTQSKEYFFAAETD
EIRRNWIKELKDAARKDAGRMLHTTKGRSMAFRRRT*

spliced messenger RNA

>Ggra744.t1 ID=Ggra744.t1|Name=Ggra744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000164_pilon:51008..52918+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCCCGTGCCGTCCGACCACTCAGCGCTGCCCAAGCAGTGGGCGCA
TGAAATGGCGCTCGCCTCCTCCACGCTGTCGTCGTCACAGTCGCCGCCGC
GCTCCCCACCCCATACCCTGGGTGGCCCCGCCTTCGACTCGCAGCTCGAC
GCCTTTCTGCACCGCTTCCAGCACCAAATCCTCGCCGCGCGCGCCCTCAA
GGACGATCTGGATCGCCTCGAGTCGCACCAACACCCGCACTACGTCGCCA
AAAAGGTCGCATTCAAGCGCCACATGGAGCACATCCGCTCCCTGTTCTCC
ACGGAGGGCGAGCAGTTTGTCGACAGTCTGGAGCGCCGCAACCCCAACCT
CACCATGGCCGCGTGCGGCCAGAACACCATCGAGCTCGCGCAGGGCATTG
AGCGCCTGGAGAGTGCCGTCAAGGAAGAGGAGACCAAACGAgccgccgcc
gcttcgcacccgccttcctcttccacgcttccgccgccgccgccgccgcc
gccCAATTCGTTGCAGCCGCATCTGGCCGCCATCACCCCACTGTCGTCGC
CGGATCGCACCGCGCCGCCGGTTTCCGCCGTGGGTCACCCGCTCAACAAC
CTCAGCTCGGAGGAGACGCTGCAGCTCATGCAAAGCGACATTCAGGCACT
CAAGCTGGAGCTCATGCGTCTGCACCGCGTCAAGGTAAGCGCCGCCTCCG
CCTCGTTGCCGCCGCCTTATGCACCCGGCTCCGTGTCGCCGCACGCCGAC
ACCCCGGCCTTCACCTCCTCCACCGTGTCGCCGGACGCCAAGTCCGTCAA
CGCGCCGCCCATTCCGGCCTCCATTCTGGCCAACAACAACGTCAGCGTCG
TACGCGTCACCGGCCGTTCCATCGCGCCCAACTACGTGTCGCACCTCGAG
CAGATGAAGACGCGCTTGCAGGCGCTGGAGAAGAAGCCGCTGTCGCGCCG
CGCCAAGTCCGCCGCCCGCTTGGGCCGTACGCAGACCATGAGCTCCATGT
ACGAGGCGCGCGCCGGCGATGAGAATCAGAACCCCAACGTGTCGGCAATG
GTCACGCCCCCCAGGGGCGTTCGCCGTCAGCACCGCTCGGTGTCGACCAC
TTCGCCGGTGGCGGCGTCGAAAACGCTGCTCACACCGCCGCCGTTGCAGC
AACTGCGCTCCGAGTGCTCGCCGCGCACCACGCCGTCGCCGGTGCGTCTT
GCACGCGAGCGCGCTTCGGGCAGTCCGGCTAGATTGTACTTTGACGCGCC
GGAGGATTTGTTGTCTCGACCGCAGTCGCACGCGGCCGCGCGCGATATTC
AGAGGTATAGTTTGAAGGTATCGCGCCGATTCGGCCCCAACGAGATGGAG
ATGCCGGCGGAGCCGCGCGCAAAGTCGGCCGTGACGGTGTCGCCCAACAG
ACGGCGCGGTGCGATGCAGGAAGGCGGCAAATCGGTAGGAAATGCATTGA
CGGAGGTGGCGGCGCCGCTGGGAGCGCCGTCAACGATTGACACCACCGGT
AGTGGTGGACGCGTGGTGGAGGAGATTGAGGGCGATATGTGGGTGAGAAA
GGGTGTGGTGTGGAAGCGGTGGAGGAGGCGGTATGCGAGCATTGTGTCGC
ATCCGTTCTTTGGCAAGGCGATCTGCCTGTTCAGCTATGACTCTGGTGGA
GGGGTGATTAGTACTAGGAGCCAGATTGTGGTGTTGGCCAATTCGCTGTG
CAAGGCATTGAGGGAGAAGCTGGAGATTGGCGGACAGGAGCGGTTCATGT
TCGTGCTGAGAACGCAGTCGAAGGAGTACTTTTTCGCGGCGGAAACGGAC
GAGATCCGTAGGAACTGGATCAAGGAGTTGAAGGACGCGGCGAGAAAGGA
CGCCGGCAGGATGTTGCACACAACAAAGGGACGCTCCATGGCATTCCGGA
GACGTACTTGA

protein sequence of Ggra744.t1

>Ggra744.t1 ID=Ggra744.t1|Name=Ggra744.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=637bp
MSPVPSDHSALPKQWAHEMALASSTLSSSQSPPRSPPHTLGGPAFDSQLD
AFLHRFQHQILAARALKDDLDRLESHQHPHYVAKKVAFKRHMEHIRSLFS
TEGEQFVDSLERRNPNLTMAACGQNTIELAQGIERLESAVKEEETKRAAA
ASHPPSSSTLPPPPPPPPNSLQPHLAAITPLSSPDRTAPPVSAVGHPLNN
LSSEETLQLMQSDIQALKLELMRLHRVKVSAASASLPPPYAPGSVSPHAD
TPAFTSSTVSPDAKSVNAPPIPASILANNNVSVVRVTGRSIAPNYVSHLE
QMKTRLQALEKKPLSRRAKSAARLGRTQTMSSMYEARAGDENQNPNVSAM
VTPPRGVRRQHRSVSTTSPVAASKTLLTPPPLQQLRSECSPRTTPSPVRL
ARERASGSPARLYFDAPEDLLSRPQSHAAARDIQRYSLKVSRRFGPNEME
MPAEPRAKSAVTVSPNRRRGAMQEGGKSVGNALTEVAAPLGAPSTIDTTG
SGGRVVEEIEGDMWVRKGVVWKRWRRRYASIVSHPFFGKAICLFSYDSGG
GVISTRSQIVVLANSLCKALREKLEIGGQERFMFVLRTQSKEYFFAAETD
EIRRNWIKELKDAARKDAGRMLHTTKGRSMAFRRRT*

mRNA from alignment at tig00000164_pilon:51008..52918+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra744.t1 ID=Ggra744.t1|Name=Ggra744.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1911bp|location=Sequence derived from alignment at tig00000164_pilon:51008..52918+ (Gracilaria gracilis GNS1m male)
ATGAGCCCCGTGCCGTCCGACCACTCAGCGCTGCCCAAGCAGTGGGCGCA
TGAAATGGCGCTCGCCTCCTCCACGCTGTCGTCGTCACAGTCGCCGCCGC
GCTCCCCACCCCATACCCTGGGTGGCCCCGCCTTCGACTCGCAGCTCGAC
GCCTTTCTGCACCGCTTCCAGCACCAAATCCTCGCCGCGCGCGCCCTCAA
GGACGATCTGGATCGCCTCGAGTCGCACCAACACCCGCACTACGTCGCCA
AAAAGGTCGCATTCAAGCGCCACATGGAGCACATCCGCTCCCTGTTCTCC
ACGGAGGGCGAGCAGTTTGTCGACAGTCTGGAGCGCCGCAACCCCAACCT
CACCATGGCCGCGTGCGGCCAGAACACCATCGAGCTCGCGCAGGGCATTG
AGCGCCTGGAGAGTGCCGTCAAGGAAGAGGAGACCAAACGAgccgccgcc
gcttcgcacccgccttcctcttccacgcttccgccgccgccgccgccgcc
gccCAATTCGTTGCAGCCGCATCTGGCCGCCATCACCCCACTGTCGTCGC
CGGATCGCACCGCGCCGCCGGTTTCCGCCGTGGGTCACCCGCTCAACAAC
CTCAGCTCGGAGGAGACGCTGCAGCTCATGCAAAGCGACATTCAGGCACT
CAAGCTGGAGCTCATGCGTCTGCACCGCGTCAAGGTAAGCGCCGCCTCCG
CCTCGTTGCCGCCGCCTTATGCACCCGGCTCCGTGTCGCCGCACGCCGAC
ACCCCGGCCTTCACCTCCTCCACCGTGTCGCCGGACGCCAAGTCCGTCAA
CGCGCCGCCCATTCCGGCCTCCATTCTGGCCAACAACAACGTCAGCGTCG
TACGCGTCACCGGCCGTTCCATCGCGCCCAACTACGTGTCGCACCTCGAG
CAGATGAAGACGCGCTTGCAGGCGCTGGAGAAGAAGCCGCTGTCGCGCCG
CGCCAAGTCCGCCGCCCGCTTGGGCCGTACGCAGACCATGAGCTCCATGT
ACGAGGCGCGCGCCGGCGATGAGAATCAGAACCCCAACGTGTCGGCAATG
GTCACGCCCCCCAGGGGCGTTCGCCGTCAGCACCGCTCGGTGTCGACCAC
TTCGCCGGTGGCGGCGTCGAAAACGCTGCTCACACCGCCGCCGTTGCAGC
AACTGCGCTCCGAGTGCTCGCCGCGCACCACGCCGTCGCCGGTGCGTCTT
GCACGCGAGCGCGCTTCGGGCAGTCCGGCTAGATTGTACTTTGACGCGCC
GGAGGATTTGTTGTCTCGACCGCAGTCGCACGCGGCCGCGCGCGATATTC
AGAGGTATAGTTTGAAGGTATCGCGCCGATTCGGCCCCAACGAGATGGAG
ATGCCGGCGGAGCCGCGCGCAAAGTCGGCCGTGACGGTGTCGCCCAACAG
ACGGCGCGGTGCGATGCAGGAAGGCGGCAAATCGGTAGGAAATGCATTGA
CGGAGGTGGCGGCGCCGCTGGGAGCGCCGTCAACGATTGACACCACCGGT
AGTGGTGGACGCGTGGTGGAGGAGATTGAGGGCGATATGTGGGTGAGAAA
GGGTGTGGTGTGGAAGCGGTGGAGGAGGCGGTATGCGAGCATTGTGTCGC
ATCCGTTCTTTGGCAAGGCGATCTGCCTGTTCAGCTATGACTCTGGTGGA
GGGGTGATTAGTACTAGGAGCCAGATTGTGGTGTTGGCCAATTCGCTGTG
CAAGGCATTGAGGGAGAAGCTGGAGATTGGCGGACAGGAGCGGTTCATGT
TCGTGCTGAGAACGCAGTCGAAGGAGTACTTTTTCGCGGCGGAAACGGAC
GAGATCCGTAGGAACTGGATCAAGGAGTTGAAGGACGCGGCGAGAAAGGA
CGCCGGCAGGATGTTGCACACAACAAAGGGACGCTCCATGGCATTCCGGA
GACGTACTTGA

Coding sequence (CDS) from alignment at tig00000164_pilon:51008..52918+

>Ggra744.t1 ID=Ggra744.t1|Name=Ggra744.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1911bp|location=Sequence derived from alignment at tig00000164_pilon:51008..52918+ (Gracilaria gracilis GNS1m male)
ATGAGCCCCGTGCCGTCCGACCACTCAGCGCTGCCCAAGCAGTGGGCGCA
TGAAATGGCGCTCGCCTCCTCCACGCTGTCGTCGTCACAGTCGCCGCCGC
GCTCCCCACCCCATACCCTGGGTGGCCCCGCCTTCGACTCGCAGCTCGAC
GCCTTTCTGCACCGCTTCCAGCACCAAATCCTCGCCGCGCGCGCCCTCAA
GGACGATCTGGATCGCCTCGAGTCGCACCAACACCCGCACTACGTCGCCA
AAAAGGTCGCATTCAAGCGCCACATGGAGCACATCCGCTCCCTGTTCTCC
ACGGAGGGCGAGCAGTTTGTCGACAGTCTGGAGCGCCGCAACCCCAACCT
CACCATGGCCGCGTGCGGCCAGAACACCATCGAGCTCGCGCAGGGCATTG
AGCGCCTGGAGAGTGCCGTCAAGGAAGAGGAGACCAAACGAgccgccgcc
gcttcgcacccgccttcctcttccacgcttccgccgccgccgccgccgcc
gccCAATTCGTTGCAGCCGCATCTGGCCGCCATCACCCCACTGTCGTCGC
CGGATCGCACCGCGCCGCCGGTTTCCGCCGTGGGTCACCCGCTCAACAAC
CTCAGCTCGGAGGAGACGCTGCAGCTCATGCAAAGCGACATTCAGGCACT
CAAGCTGGAGCTCATGCGTCTGCACCGCGTCAAGGTAAGCGCCGCCTCCG
CCTCGTTGCCGCCGCCTTATGCACCCGGCTCCGTGTCGCCGCACGCCGAC
ACCCCGGCCTTCACCTCCTCCACCGTGTCGCCGGACGCCAAGTCCGTCAA
CGCGCCGCCCATTCCGGCCTCCATTCTGGCCAACAACAACGTCAGCGTCG
TACGCGTCACCGGCCGTTCCATCGCGCCCAACTACGTGTCGCACCTCGAG
CAGATGAAGACGCGCTTGCAGGCGCTGGAGAAGAAGCCGCTGTCGCGCCG
CGCCAAGTCCGCCGCCCGCTTGGGCCGTACGCAGACCATGAGCTCCATGT
ACGAGGCGCGCGCCGGCGATGAGAATCAGAACCCCAACGTGTCGGCAATG
GTCACGCCCCCCAGGGGCGTTCGCCGTCAGCACCGCTCGGTGTCGACCAC
TTCGCCGGTGGCGGCGTCGAAAACGCTGCTCACACCGCCGCCGTTGCAGC
AACTGCGCTCCGAGTGCTCGCCGCGCACCACGCCGTCGCCGGTGCGTCTT
GCACGCGAGCGCGCTTCGGGCAGTCCGGCTAGATTGTACTTTGACGCGCC
GGAGGATTTGTTGTCTCGACCGCAGTCGCACGCGGCCGCGCGCGATATTC
AGAGGTATAGTTTGAAGGTATCGCGCCGATTCGGCCCCAACGAGATGGAG
ATGCCGGCGGAGCCGCGCGCAAAGTCGGCCGTGACGGTGTCGCCCAACAG
ACGGCGCGGTGCGATGCAGGAAGGCGGCAAATCGGTAGGAAATGCATTGA
CGGAGGTGGCGGCGCCGCTGGGAGCGCCGTCAACGATTGACACCACCGGT
AGTGGTGGACGCGTGGTGGAGGAGATTGAGGGCGATATGTGGGTGAGAAA
GGGTGTGGTGTGGAAGCGGTGGAGGAGGCGGTATGCGAGCATTGTGTCGC
ATCCGTTCTTTGGCAAGGCGATCTGCCTGTTCAGCTATGACTCTGGTGGA
GGGGTGATTAGTACTAGGAGCCAGATTGTGGTGTTGGCCAATTCGCTGTG
CAAGGCATTGAGGGAGAAGCTGGAGATTGGCGGACAGGAGCGGTTCATGT
TCGTGCTGAGAACGCAGTCGAAGGAGTACTTTTTCGCGGCGGAAACGGAC
GAGATCCGTAGGAACTGGATCAAGGAGTTGAAGGACGCGGCGAGAAAGGA
CGCCGGCAGGATGTTGCACACAACAAAGGGACGCTCCATGGCATTCCGGA
GACGTACTTGA