Ggra7426.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7426.t1
Unique NameGgra7426.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:1100020..1100868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7426Ggra7426Gracilaria gracilis GNS1m malegenetig00000871_pilon 1100020..1100868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7426.t1.stop1Ggra7426.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 1100020..1100022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7426.t1.CDS1Ggra7426.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 1100020..1100868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7426.t1.exon1Ggra7426.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 1100020..1100868 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7426.t1.start1Ggra7426.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 1100866..1100868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7426.t1Ggra7426.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 1100020..1100868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7426.t1 ID=Ggra7426.t1|Name=Ggra7426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=283bp
MTKPFFYSAAEDVVLLRIVLRFQAHLVGADEVSAHTRSIALPLDVMEVIS
KEFQIEVRDKITPRPRRSSVSLRARYVRLLEHYASDTLPEDSNKGKGRER
ENLLKLIIQERAAQYASEVQEDSPPSDPDESIYAEAEDPIDLIQPSEQVT
DMEKIHSQSERQRGILLELVASNEREHREFISEYSDMLSDIGAQYESELQ
ALEKQYQTCLDKCRNEINARKKQLMQLDEEHAVELQKVREQRELRRQQLL
EKCFSIHPTLANANYTAQAFPDRINDNSRSQA*
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spliced messenger RNA

>Ggra7426.t1 ID=Ggra7426.t1|Name=Ggra7426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000871_pilon:1100020..1100868- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAACCATTCTTCTATTCAGCGGCCGAAGATGTGGTACTTCTTCG
TATTGTCTTGAGGTTTCAGGCTCATCTCGTTGGGGCTGATGAGGTTTCTG
CACACACCCGATCCATTGCGCTGCCATTAGATGTTATGGAAGTCATATCG
AAAGAGTTCCAAATCGAAGTTCGAGACAAAATAACGCCGAGACCCAGGCG
CTCTTCTGTGTCTTTACGCGCCCGCTATGTGCGACTTTTAGAGCACTACG
CATCAGATACGTTACCAGAGGATAGCAACAAGGGAAAGGGGCGTGAGAGG
GAAAATTTGTTGAAGTTAATCATCCAAGAACGTGCCGCTCAGTACGCTTC
TGAAGTCCAAGAAGACTCTCCTCCATCTGATCCTGATGAAAGTATCTACG
CCGAGGCCGAGGATCCCATTGATCTAATACAGCCATCGGAACAAGTGACA
GACATGGAAAAGATACACAGTCAATCAGAACGGCAAAGAGGGATACTATT
GGAGCTTGTCGCCTCAAATGAGAGGGAACATCGCGAATTCATATCCGAAT
ACTCTGATATGCTGTCGGACATCGGTGCTCAATACGAAAGTGAACTCCAG
GCCTTAGAGAAACAGTACCAAACCTGTCTGGACAAGTGCCGAAACGAAAT
AAATGCCCGGAAGAAACAGTTGATGCAGTTGGATGAAGAGCATGCAGTGG
AATTACAAAAAGTACGAGAACAAAGAGAACTACGGAGACAGCAACTGCTG
GAGAAGTGTTTCTCCATCCACCCAACACTTGCGAATGCGAATTACACCGC
ACAAGCTTTTCCCGACAGAATTAATGATAACAGTCGATCACAAGCTTGA
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protein sequence of Ggra7426.t1

>Ggra7426.t1 ID=Ggra7426.t1|Name=Ggra7426.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MTKPFFYSAAEDVVLLRIVLRFQAHLVGADEVSAHTRSIALPLDVMEVIS
KEFQIEVRDKITPRPRRSSVSLRARYVRLLEHYASDTLPEDSNKGKGRER
ENLLKLIIQERAAQYASEVQEDSPPSDPDESIYAEAEDPIDLIQPSEQVT
DMEKIHSQSERQRGILLELVASNEREHREFISEYSDMLSDIGAQYESELQ
ALEKQYQTCLDKCRNEINARKKQLMQLDEEHAVELQKVREQRELRRQQLL
EKCFSIHPTLANANYTAQAFPDRINDNSRSQA*
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mRNA from alignment at tig00000871_pilon:1100020..1100868-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7426.t1 ID=Ggra7426.t1|Name=Ggra7426.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000871_pilon:1100020..1100868- (Gracilaria gracilis GNS1m male)
ATGACAAAACCATTCTTCTATTCAGCGGCCGAAGATGTGGTACTTCTTCG
TATTGTCTTGAGGTTTCAGGCTCATCTCGTTGGGGCTGATGAGGTTTCTG
CACACACCCGATCCATTGCGCTGCCATTAGATGTTATGGAAGTCATATCG
AAAGAGTTCCAAATCGAAGTTCGAGACAAAATAACGCCGAGACCCAGGCG
CTCTTCTGTGTCTTTACGCGCCCGCTATGTGCGACTTTTAGAGCACTACG
CATCAGATACGTTACCAGAGGATAGCAACAAGGGAAAGGGGCGTGAGAGG
GAAAATTTGTTGAAGTTAATCATCCAAGAACGTGCCGCTCAGTACGCTTC
TGAAGTCCAAGAAGACTCTCCTCCATCTGATCCTGATGAAAGTATCTACG
CCGAGGCCGAGGATCCCATTGATCTAATACAGCCATCGGAACAAGTGACA
GACATGGAAAAGATACACAGTCAATCAGAACGGCAAAGAGGGATACTATT
GGAGCTTGTCGCCTCAAATGAGAGGGAACATCGCGAATTCATATCCGAAT
ACTCTGATATGCTGTCGGACATCGGTGCTCAATACGAAAGTGAACTCCAG
GCCTTAGAGAAACAGTACCAAACCTGTCTGGACAAGTGCCGAAACGAAAT
AAATGCCCGGAAGAAACAGTTGATGCAGTTGGATGAAGAGCATGCAGTGG
AATTACAAAAAGTACGAGAACAAAGAGAACTACGGAGACAGCAACTGCTG
GAGAAGTGTTTCTCCATCCACCCAACACTTGCGAATGCGAATTACACCGC
ACAAGCTTTTCCCGACAGAATTAATGATAACAGTCGATCACAAGCTTGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:1100020..1100868-

>Ggra7426.t1 ID=Ggra7426.t1|Name=Ggra7426.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000871_pilon:1100020..1100868- (Gracilaria gracilis GNS1m male)
ATGACAAAACCATTCTTCTATTCAGCGGCCGAAGATGTGGTACTTCTTCG
TATTGTCTTGAGGTTTCAGGCTCATCTCGTTGGGGCTGATGAGGTTTCTG
CACACACCCGATCCATTGCGCTGCCATTAGATGTTATGGAAGTCATATCG
AAAGAGTTCCAAATCGAAGTTCGAGACAAAATAACGCCGAGACCCAGGCG
CTCTTCTGTGTCTTTACGCGCCCGCTATGTGCGACTTTTAGAGCACTACG
CATCAGATACGTTACCAGAGGATAGCAACAAGGGAAAGGGGCGTGAGAGG
GAAAATTTGTTGAAGTTAATCATCCAAGAACGTGCCGCTCAGTACGCTTC
TGAAGTCCAAGAAGACTCTCCTCCATCTGATCCTGATGAAAGTATCTACG
CCGAGGCCGAGGATCCCATTGATCTAATACAGCCATCGGAACAAGTGACA
GACATGGAAAAGATACACAGTCAATCAGAACGGCAAAGAGGGATACTATT
GGAGCTTGTCGCCTCAAATGAGAGGGAACATCGCGAATTCATATCCGAAT
ACTCTGATATGCTGTCGGACATCGGTGCTCAATACGAAAGTGAACTCCAG
GCCTTAGAGAAACAGTACCAAACCTGTCTGGACAAGTGCCGAAACGAAAT
AAATGCCCGGAAGAAACAGTTGATGCAGTTGGATGAAGAGCATGCAGTGG
AATTACAAAAAGTACGAGAACAAAGAGAACTACGGAGACAGCAACTGCTG
GAGAAGTGTTTCTCCATCCACCCAACACTTGCGAATGCGAATTACACCGC
ACAAGCTTTTCCCGACAGAATTAATGATAACAGTCGATCACAAGCTTGA
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