Ggra7410.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7410.t1
Unique NameGgra7410.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:1025987..1026625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7410Ggra7410Gracilaria gracilis GNS1m malegenetig00000871_pilon 1025987..1026625 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7410.t1.start1Ggra7410.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 1025987..1025989 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7410.t1.CDS1Ggra7410.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 1025987..1026625 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7410.t1.exon1Ggra7410.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 1025987..1026625 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7410.t1.stop1Ggra7410.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 1026623..1026625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7410.t1Ggra7410.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 1025987..1026625 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7410.t1 ID=Ggra7410.t1|Name=Ggra7410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=213bp
MDSKELKDIDEAVEPIHLAVRGFADAIAEEYIVYPEERIKEKKAREAIQL
FRNTCADALETIAKWEDKERANLVKKAIVVVKRENEDDIMLYEKTLTKFY
ERKKQYDKCNVLTRNLLSPRSKSRDKLWDEEAVATYPEMNCMVLCFILFG
LLLVGWMLTYFGVGGVGEIRRLYVSHKDAPSANNSCDAYGFCNVPTIIKN
VVSVEDFERLEL*
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spliced messenger RNA

>Ggra7410.t1 ID=Ggra7410.t1|Name=Ggra7410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000871_pilon:1025987..1026625+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAGTAAGGAACTCAAGGATATTGACGAGGCTGTAGAGCCTATTCA
TCTCGCCGTGCGCGGGTTTGCCGATGCAATCGCAGAAGAATACATAGTGT
ATCCTGAGGAGCGAATCAAAGAAAAGAAGGCCCGGGAAGCTATTCAACTC
TTTCGGAACACCTGTGCTGATGCTCTGGAAACCATCGCAAAATGGGAAGA
CAAGGAGCGTGCAAACCTTGTCAAAAAGGCGATTGTAGTGGTCAAGCGAG
AAAATGAAGACGATATCATGTTGTATGAAAAGACGCTAACCAAGTTTTAC
GAACGTAAAAAGCAATACGACAAATGCAATGTATTGACGAGGAATTTGCT
ATCTCCGCGATCAAAGTCTAGGGATAAATTGTGGGACGAAGAAGCTGTGG
CCACGTATCCTGAGATGAACTGTATGGTGCTCTGTTTCATTCTTTTTGGT
CTTCTACTGGTAGGGTGGATGCTTACCTATTTTGGCGTGGGTGGAGTGGG
AGAGATTAGGAGACTATATGTGTCGCATAAGGACGCCCCTTCTGCTAATA
ATAGCTGTGATGCATATGGTTTTTGCAACGTTCCTACCATTATCAAGAAT
GTCGTGTCTGTTGAGGACTTTGAGAGACTGGAACTCTAA
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protein sequence of Ggra7410.t1

>Ggra7410.t1 ID=Ggra7410.t1|Name=Ggra7410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=213bp
MDSKELKDIDEAVEPIHLAVRGFADAIAEEYIVYPEERIKEKKAREAIQL
FRNTCADALETIAKWEDKERANLVKKAIVVVKRENEDDIMLYEKTLTKFY
ERKKQYDKCNVLTRNLLSPRSKSRDKLWDEEAVATYPEMNCMVLCFILFG
LLLVGWMLTYFGVGGVGEIRRLYVSHKDAPSANNSCDAYGFCNVPTIIKN
VVSVEDFERLEL*
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mRNA from alignment at tig00000871_pilon:1025987..1026625+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7410.t1 ID=Ggra7410.t1|Name=Ggra7410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000871_pilon:1025987..1026625+ (Gracilaria gracilis GNS1m male)
ATGGACAGTAAGGAACTCAAGGATATTGACGAGGCTGTAGAGCCTATTCA
TCTCGCCGTGCGCGGGTTTGCCGATGCAATCGCAGAAGAATACATAGTGT
ATCCTGAGGAGCGAATCAAAGAAAAGAAGGCCCGGGAAGCTATTCAACTC
TTTCGGAACACCTGTGCTGATGCTCTGGAAACCATCGCAAAATGGGAAGA
CAAGGAGCGTGCAAACCTTGTCAAAAAGGCGATTGTAGTGGTCAAGCGAG
AAAATGAAGACGATATCATGTTGTATGAAAAGACGCTAACCAAGTTTTAC
GAACGTAAAAAGCAATACGACAAATGCAATGTATTGACGAGGAATTTGCT
ATCTCCGCGATCAAAGTCTAGGGATAAATTGTGGGACGAAGAAGCTGTGG
CCACGTATCCTGAGATGAACTGTATGGTGCTCTGTTTCATTCTTTTTGGT
CTTCTACTGGTAGGGTGGATGCTTACCTATTTTGGCGTGGGTGGAGTGGG
AGAGATTAGGAGACTATATGTGTCGCATAAGGACGCCCCTTCTGCTAATA
ATAGCTGTGATGCATATGGTTTTTGCAACGTTCCTACCATTATCAAGAAT
GTCGTGTCTGTTGAGGACTTTGAGAGACTGGAACTCTAA
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Coding sequence (CDS) from alignment at tig00000871_pilon:1025987..1026625+

>Ggra7410.t1 ID=Ggra7410.t1|Name=Ggra7410.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000871_pilon:1025987..1026625+ (Gracilaria gracilis GNS1m male)
ATGGACAGTAAGGAACTCAAGGATATTGACGAGGCTGTAGAGCCTATTCA
TCTCGCCGTGCGCGGGTTTGCCGATGCAATCGCAGAAGAATACATAGTGT
ATCCTGAGGAGCGAATCAAAGAAAAGAAGGCCCGGGAAGCTATTCAACTC
TTTCGGAACACCTGTGCTGATGCTCTGGAAACCATCGCAAAATGGGAAGA
CAAGGAGCGTGCAAACCTTGTCAAAAAGGCGATTGTAGTGGTCAAGCGAG
AAAATGAAGACGATATCATGTTGTATGAAAAGACGCTAACCAAGTTTTAC
GAACGTAAAAAGCAATACGACAAATGCAATGTATTGACGAGGAATTTGCT
ATCTCCGCGATCAAAGTCTAGGGATAAATTGTGGGACGAAGAAGCTGTGG
CCACGTATCCTGAGATGAACTGTATGGTGCTCTGTTTCATTCTTTTTGGT
CTTCTACTGGTAGGGTGGATGCTTACCTATTTTGGCGTGGGTGGAGTGGG
AGAGATTAGGAGACTATATGTGTCGCATAAGGACGCCCCTTCTGCTAATA
ATAGCTGTGATGCATATGGTTTTTGCAACGTTCCTACCATTATCAAGAAT
GTCGTGTCTGTTGAGGACTTTGAGAGACTGGAACTCTAA
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