Ggra7391.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7391.t1
Unique NameGgra7391.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:958174..959262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_01819T0
PFAMsExostosin
Max annot lvl2759|Eukaryota
Evalue9.06e-49
EggNOG OGsKOG1021@1|root,KOG1021@2759|Eukaryota
Descriptionmacromolecule glycosylation
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7391Ggra7391Gracilaria gracilis GNS1m malegenetig00000871_pilon 958174..959262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7391.t1Ggra7391.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 958174..959262 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7391.t1.start1Ggra7391.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 958174..958176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7391.t1.CDS1Ggra7391.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 958174..958461 +
Ggra7391.t1.CDS2Ggra7391.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 958678..958846 +
Ggra7391.t1.CDS3Ggra7391.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000871_pilon 958928..959262 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7391.t1.exon1Ggra7391.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 958174..958461 +
Ggra7391.t1.exon2Ggra7391.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 958678..958846 +
Ggra7391.t1.exon3Ggra7391.t1.exon3Gracilaria gracilis GNS1m maleexontig00000871_pilon 958928..959262 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7391.t1.intron1Ggra7391.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 958462..958677 +
Ggra7391.t1.intron2Ggra7391.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000871_pilon 958847..958927 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7391.t1.stop1Ggra7391.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 959260..959262 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7391.t1 ID=Ggra7391.t1|Name=Ggra7391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MNWISERYPFWNQSNGRDHVYVFSQGFAARLAGNWQKYNNGIFMVHNGEF
TAPEYTPHKDITIPPELRAYLQPYWTTTYGTKSDLSKKYLAHFGGQVVDQ
SVEDHRGRNFSRGVRQYIVSEFSKKPDYRITGVRSQTYLNDMMKSRFCLA
PEGWHPWSPRPYYAVLMGCIPVIISEVQELAFEDQIEWGSFAVWVRPQDV
RNLDSILRSFSKEEIQLRRDRMSKVWRAVWYGDNGLANEAIMQELFQRKY
RVRPKRLFSASNR*
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spliced messenger RNA

>Ggra7391.t1 ID=Ggra7391.t1|Name=Ggra7391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000871_pilon:958174..959262+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGGATATCCGAACGATATCCATTTTGGAACCAAAGCAACGGACG
AGACCACGTTTATGTCTTTTCTCAAGGCTTCGCGGCAAGGTTGGCAGGAA
ACTGGCAAAAGTATAACAATGGTATTTTCATGGTACATAATGGTGAGTTT
ACGGCGCCAGAGTATACACCTCACAAAGACATCACAATACCCCCCGAACT
ACGAGCATACCTACAACCGTACTGGACAACAACATATGGAACAAAAAGTG
ACCTTTCTAAGAAGTATCTCGCCCATTTTGGTGGTCAGGTAGTAGACCAG
TCGGTTGAGGACCACAGGGGACGCAATTTCTCCCGTGGAGTTCGCCAATA
CATCGTTTCCGAATTCTCCAAGAAGCCAGATTACAGAATAACAGGTGTCC
GGTCCCAAACCTATCTTAATGATATGATGAAGAGCcgcttttgtctagct
cctgaagGATGGCACCCGTGGAGTCCAAGACCGTATTATGCGGTGCTCAT
GGGATGCATTCCTGTGATAATATCTGAGGTGCAGGAATTAGCTTTTGAAG
ACCAGATAGAATGGGGTTCGTTCGCTGTTTGGGTTCGCCCGCAGGATGTA
AGGAATCTTGATTCAATCTTGCGTTCGTTCTCAAAAGAAGAAATTCAACT
TCGAAGGGACAGAATGAGCAAAGTATGGAGAGCAGTGTGGTACGGAGACA
ATGGTCTTGCGAATGAGGCAATCATGCAGGAATTGTTTCAGCGAAAGTAT
CGTGTCCGACCAAAGCGGCTTTTCAGTGCGTCAAACCGATGA
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protein sequence of Ggra7391.t1

>Ggra7391.t1 ID=Ggra7391.t1|Name=Ggra7391.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MNWISERYPFWNQSNGRDHVYVFSQGFAARLAGNWQKYNNGIFMVHNGEF
TAPEYTPHKDITIPPELRAYLQPYWTTTYGTKSDLSKKYLAHFGGQVVDQ
SVEDHRGRNFSRGVRQYIVSEFSKKPDYRITGVRSQTYLNDMMKSRFCLA
PEGWHPWSPRPYYAVLMGCIPVIISEVQELAFEDQIEWGSFAVWVRPQDV
RNLDSILRSFSKEEIQLRRDRMSKVWRAVWYGDNGLANEAIMQELFQRKY
RVRPKRLFSASNR*
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mRNA from alignment at tig00000871_pilon:958174..959262+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7391.t1 ID=Ggra7391.t1|Name=Ggra7391.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1089bp|location=Sequence derived from alignment at tig00000871_pilon:958174..959262+ (Gracilaria gracilis GNS1m male)
ATGAACTGGATATCCGAACGATATCCATTTTGGAACCAAAGCAACGGACG
AGACCACGTTTATGTCTTTTCTCAAGGCTTCGCGGCAAGGTTGGCAGGAA
ACTGGCAAAAGTATAACAATGGTATTTTCATGGTACATAATGGTGAGTTT
ACGGCGCCAGAGTATACACCTCACAAAGACATCACAATACCCCCCGAACT
ACGAGCATACCTACAACCGTACTGGACAACAACATATGGAACAAAAAGTG
ACCTTTCTAAGAAGTATCTCGCCCATTTTGGTGGTCAGGTAAGCTGAACA
TGATATCTATCACCCGCAATATCTCGTCATGCTATCCAAGAACTGCCCTA
CTCACAGTTTGACGTAGGGGTTGACAGCAATACCGCGTTTTCCGAGAATC
TCTCATTGCACTGGTCTAACGAATTATGTCTTGCCCGCAACATTCCCCAT
GCATCCTTTCCTTCCCGTCATGAAATTTCGTTGACTACACACATGCATTT
GCAGGTAGTAGACCAGTCGGTTGAGGACCACAGGGGACGCAATTTCTCCC
GTGGAGTTCGCCAATACATCGTTTCCGAATTCTCCAAGAAGCCAGATTAC
AGAATAACAGGTGTCCGGTCCCAAACCTATCTTAATGATATGATGAAGAG
Ccgcttttgtctagctcctgaaggtaagtacgtgctcagcagagccctcc
gccgaatatgtactaaaaacaatagctcatGTGCTCATAAACTGATCGAC
ATAGGATGGCACCCGTGGAGTCCAAGACCGTATTATGCGGTGCTCATGGG
ATGCATTCCTGTGATAATATCTGAGGTGCAGGAATTAGCTTTTGAAGACC
AGATAGAATGGGGTTCGTTCGCTGTTTGGGTTCGCCCGCAGGATGTAAGG
AATCTTGATTCAATCTTGCGTTCGTTCTCAAAAGAAGAAATTCAACTTCG
AAGGGACAGAATGAGCAAAGTATGGAGAGCAGTGTGGTACGGAGACAATG
GTCTTGCGAATGAGGCAATCATGCAGGAATTGTTTCAGCGAAAGTATCGT
GTCCGACCAAAGCGGCTTTTCAGTGCGTCAAACCGATGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:958174..959262+

>Ggra7391.t1 ID=Ggra7391.t1|Name=Ggra7391.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000871_pilon:958174..959262+ (Gracilaria gracilis GNS1m male)
ATGAACTGGATATCCGAACGATATCCATTTTGGAACCAAAGCAACGGACG
AGACCACGTTTATGTCTTTTCTCAAGGCTTCGCGGCAAGGTTGGCAGGAA
ACTGGCAAAAGTATAACAATGGTATTTTCATGGTACATAATGGTGAGTTT
ACGGCGCCAGAGTATACACCTCACAAAGACATCACAATACCCCCCGAACT
ACGAGCATACCTACAACCGTACTGGACAACAACATATGGAACAAAAAGTG
ACCTTTCTAAGAAGTATCTCGCCCATTTTGGTGGTCAGGTAGTAGACCAG
TCGGTTGAGGACCACAGGGGACGCAATTTCTCCCGTGGAGTTCGCCAATA
CATCGTTTCCGAATTCTCCAAGAAGCCAGATTACAGAATAACAGGTGTCC
GGTCCCAAACCTATCTTAATGATATGATGAAGAGCcgcttttgtctagct
cctgaagGATGGCACCCGTGGAGTCCAAGACCGTATTATGCGGTGCTCAT
GGGATGCATTCCTGTGATAATATCTGAGGTGCAGGAATTAGCTTTTGAAG
ACCAGATAGAATGGGGTTCGTTCGCTGTTTGGGTTCGCCCGCAGGATGTA
AGGAATCTTGATTCAATCTTGCGTTCGTTCTCAAAAGAAGAAATTCAACT
TCGAAGGGACAGAATGAGCAAAGTATGGAGAGCAGTGTGGTACGGAGACA
ATGGTCTTGCGAATGAGGCAATCATGCAGGAATTGTTTCAGCGAAAGTAT
CGTGTCCGACCAAAGCGGCTTTTCAGTGCGTCAAACCGATGA
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