Ggra7373.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7373.t1
Unique NameGgra7373.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:911007..911986 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7373Ggra7373Gracilaria gracilis GNS1m malegenetig00000871_pilon 911007..911986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7373.t1Ggra7373.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 911007..911986 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7373.t1.start1Ggra7373.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 911007..911009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7373.t1.CDS1Ggra7373.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 911007..911106 +
Ggra7373.t1.CDS2Ggra7373.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000871_pilon 911232..911986 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7373.t1.exon1Ggra7373.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 911007..911106 +
Ggra7373.t1.exon2Ggra7373.t1.exon2Gracilaria gracilis GNS1m maleexontig00000871_pilon 911232..911986 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7373.t1.intron1Ggra7373.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000871_pilon 911107..911231 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7373.t1.stop1Ggra7373.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 911984..911986 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7373.t1 ID=Ggra7373.t1|Name=Ggra7373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp
MLSNKLAISCLLFSICIATVKGEAAPCRFDTDYCSCKFGSSSQGICWDRI
DGTPASGICRERYCKAGWTCGCLERSHLCPMKAITRSTLIGLQGGTPYCR
DQTDRTAAQPVIELGKWFIGLSTSGMLQNECKDIKWWHNGELLGVYGDSP
IITPSNIGSEMQRRGNHSALELRRGDLLAFRLRNASYYCFTGTSEIQVNG
QSLTLTDSSVSAMFARQHSDNWFKPSFAPTIGQNESVAKPVDFVPLRTQL
FSNGNSILPGSDDWKAPDGTRDHERGNFYFRIRL*
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spliced messenger RNA

>Ggra7373.t1 ID=Ggra7373.t1|Name=Ggra7373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000871_pilon:911007..911986+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCAAACAAACTTGCAATTTCGTGCCTTCTTTTCTCTATCTGCAT
CGCTACGGTTAAAGGCGAAGCTGCCCCATGTAGATTTGATACAGATTACT
GCAGCTGTAAGTTTGGCTCCTCTTCCCAGGGTATTTGCTGGGATCGTATT
GATGGCACACCAGCCTCCGGAATATGTAGAGAACGATACTGCAAAGCAGG
TTGGACTTGTGGTTGTTTGGAGAGGTCGCATCTCTGTCCGATGAAAGCTA
TAACCAGAAGCACGCTGATAGGATTGCAAGGAGGCACGCCATATTGCCGT
GATCAGACAGATCGAACCGCCGCACAACCGGTAATTGAGCTAGGAAAATG
GTTCATCGGTTTGTCAACAAGTGGGATGCTCCAGAACGAGTGCAAGGATA
TCAAATGGTGGCACAATGGTGAGCTTCTGGGAGTTTATGGGGACAGTCCC
ATTATTACCCCGTCGAACATTGGGAGCGAAATGCAGAGAAGAGGAAATCA
TAGTGCTCTAGAGCTCAGGCGTGGGGACCTTCTCGCATTCAGACTTCGAA
ATGCCAGTTACTATTGTTTTACCGGAACCTCCGAAATTCAAGTGAACGGG
CAAAGCCTGACGTTGACAGACAGCTCTGTTTCAGCCATGTTCGCTCGACA
ACATTCGGATAACTGGTTCAAACCATCATTTGCTCCGACGATTGGACAAA
ACGAGAGCGTTGCCAAACCGGTTGATTTTGTCCCCCTTCGCACGCAACTG
TTCTCGAACGGAAATTCGATATTGCCGGGGAGTGACGACTGGAAAGCCCC
TGATGGGACAAGAGATCACGAGCGCGGTAACTTTTACTTCCGTATCCGGT
TGTAG
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protein sequence of Ggra7373.t1

>Ggra7373.t1 ID=Ggra7373.t1|Name=Ggra7373.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=285bp
MLSNKLAISCLLFSICIATVKGEAAPCRFDTDYCSCKFGSSSQGICWDRI
DGTPASGICRERYCKAGWTCGCLERSHLCPMKAITRSTLIGLQGGTPYCR
DQTDRTAAQPVIELGKWFIGLSTSGMLQNECKDIKWWHNGELLGVYGDSP
IITPSNIGSEMQRRGNHSALELRRGDLLAFRLRNASYYCFTGTSEIQVNG
QSLTLTDSSVSAMFARQHSDNWFKPSFAPTIGQNESVAKPVDFVPLRTQL
FSNGNSILPGSDDWKAPDGTRDHERGNFYFRIRL*
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mRNA from alignment at tig00000871_pilon:911007..911986+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7373.t1 ID=Ggra7373.t1|Name=Ggra7373.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=980bp|location=Sequence derived from alignment at tig00000871_pilon:911007..911986+ (Gracilaria gracilis GNS1m male)
ATGCTGTCAAACAAACTTGCAATTTCGTGCCTTCTTTTCTCTATCTGCAT
CGCTACGGTTAAAGGCGAAGCTGCCCCATGTAGATTTGATACAGATTACT
GTGAGTTACCATCCAAAGCTAATGCGAACATCCATGAACATCATAATTCC
TCTTCAAATAGTTTAGAAGATGGCAGAAGCAAAGAGAAATGCTAACTACT
TGACTCCTCTGTTTCCAACGAACAGGCAGCTGTAAGTTTGGCTCCTCTTC
CCAGGGTATTTGCTGGGATCGTATTGATGGCACACCAGCCTCCGGAATAT
GTAGAGAACGATACTGCAAAGCAGGTTGGACTTGTGGTTGTTTGGAGAGG
TCGCATCTCTGTCCGATGAAAGCTATAACCAGAAGCACGCTGATAGGATT
GCAAGGAGGCACGCCATATTGCCGTGATCAGACAGATCGAACCGCCGCAC
AACCGGTAATTGAGCTAGGAAAATGGTTCATCGGTTTGTCAACAAGTGGG
ATGCTCCAGAACGAGTGCAAGGATATCAAATGGTGGCACAATGGTGAGCT
TCTGGGAGTTTATGGGGACAGTCCCATTATTACCCCGTCGAACATTGGGA
GCGAAATGCAGAGAAGAGGAAATCATAGTGCTCTAGAGCTCAGGCGTGGG
GACCTTCTCGCATTCAGACTTCGAAATGCCAGTTACTATTGTTTTACCGG
AACCTCCGAAATTCAAGTGAACGGGCAAAGCCTGACGTTGACAGACAGCT
CTGTTTCAGCCATGTTCGCTCGACAACATTCGGATAACTGGTTCAAACCA
TCATTTGCTCCGACGATTGGACAAAACGAGAGCGTTGCCAAACCGGTTGA
TTTTGTCCCCCTTCGCACGCAACTGTTCTCGAACGGAAATTCGATATTGC
CGGGGAGTGACGACTGGAAAGCCCCTGATGGGACAAGAGATCACGAGCGC
GGTAACTTTTACTTCCGTATCCGGTTGTAG
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Coding sequence (CDS) from alignment at tig00000871_pilon:911007..911986+

>Ggra7373.t1 ID=Ggra7373.t1|Name=Ggra7373.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=855bp|location=Sequence derived from alignment at tig00000871_pilon:911007..911986+ (Gracilaria gracilis GNS1m male)
ATGCTGTCAAACAAACTTGCAATTTCGTGCCTTCTTTTCTCTATCTGCAT
CGCTACGGTTAAAGGCGAAGCTGCCCCATGTAGATTTGATACAGATTACT
GCAGCTGTAAGTTTGGCTCCTCTTCCCAGGGTATTTGCTGGGATCGTATT
GATGGCACACCAGCCTCCGGAATATGTAGAGAACGATACTGCAAAGCAGG
TTGGACTTGTGGTTGTTTGGAGAGGTCGCATCTCTGTCCGATGAAAGCTA
TAACCAGAAGCACGCTGATAGGATTGCAAGGAGGCACGCCATATTGCCGT
GATCAGACAGATCGAACCGCCGCACAACCGGTAATTGAGCTAGGAAAATG
GTTCATCGGTTTGTCAACAAGTGGGATGCTCCAGAACGAGTGCAAGGATA
TCAAATGGTGGCACAATGGTGAGCTTCTGGGAGTTTATGGGGACAGTCCC
ATTATTACCCCGTCGAACATTGGGAGCGAAATGCAGAGAAGAGGAAATCA
TAGTGCTCTAGAGCTCAGGCGTGGGGACCTTCTCGCATTCAGACTTCGAA
ATGCCAGTTACTATTGTTTTACCGGAACCTCCGAAATTCAAGTGAACGGG
CAAAGCCTGACGTTGACAGACAGCTCTGTTTCAGCCATGTTCGCTCGACA
ACATTCGGATAACTGGTTCAAACCATCATTTGCTCCGACGATTGGACAAA
ACGAGAGCGTTGCCAAACCGGTTGATTTTGTCCCCCTTCGCACGCAACTG
TTCTCGAACGGAAATTCGATATTGCCGGGGAGTGACGACTGGAAAGCCCC
TGATGGGACAAGAGATCACGAGCGCGGTAACTTTTACTTCCGTATCCGGT
TGTAG
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