Ggra737.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra737.t1
Unique NameGgra737.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:53362..54288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A090M8J3
PFAMsHydrolase_3
Max annot lvl3041|Chlorophyta
Evalue1.19e-39
EggNOG OGsCOG0561@1|root,2S1YA@2759|Eukaryota,388N7@33090|Viridiplantae,34JF1@3041|Chlorophyta
DescriptionSucrose-6F-phosphate phosphohydrolase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra737Ggra737Gracilaria gracilis GNS1m malegenetig00000204_pilon 53362..54288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra737.t1.stop1Ggra737.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000204_pilon 53362..53364 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra737.t1.CDS1Ggra737.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000204_pilon 53362..54288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra737.t1.exon1Ggra737.t1.exon1Gracilaria gracilis GNS1m maleexontig00000204_pilon 53362..54288 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra737.t1.start1Ggra737.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000204_pilon 54286..54288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra737.t1Ggra737.t1Gracilaria gracilis GNS1m malepolypeptidetig00000204_pilon 53362..54288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra737.t1 ID=Ggra737.t1|Name=Ggra737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MLLFLHPTFQTVIAPPKRLSSISPSVCNLHASIQSSRPSIRIIASDIDGT
LLTSKKRLHPKNEPLVRQAVESGVLFVPATGKSASGALKALGGSLTSFLT
NTQPSMPGIFLNGLLVKANGEVIFERTLRESDVLKVLKEIRRLELTPLLY
SADNVLVYKRSSYTDMFMVSYEPEPQEADLVTRAVQVPIHKILLVDETGG
DIRRFRNHLSRSLNNVVTITQARPDVLEVLPKGASKGKALQHLLSYLQIS
KESAMAVGDGENDLEMLQVAGLAVATGNAVPTLLGVAHHVVCCNDSGAVA
DAINKFVL*
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spliced messenger RNA

>Ggra737.t1 ID=Ggra737.t1|Name=Ggra737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000204_pilon:53362..54288- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCTCTTTCTTCACCCAACGTTTCAAACGGTTATAGCACCCCCTAA
ACGACTCAGCAGCATATCGCCAAGTGTCTGCAATCTTCACGCATCCATTC
AATCATCTCGTCCGAGTATTCGAATCATAGCTAGTGATATCGATGGAACG
CTTCTCACTTCGAAGAAACGACTTCATCCGAAGAATGAACCCCTTGTGAG
GCAGGCGGTGGAATCAGGTGTTTTGTTTGTTCCGGCCACTGGGAAATCAG
CCAGTGGGGCCCTGAAAGCACTTGGAGGTTCCCTAACTTCCTTTCTGACG
AACACACAGCCGTCCATGCCTGGCATTTTCCTCAATGGCTTATTGGTAAA
GGCGAATGGAGAGGTTATATTTGAGAGAACCCTTCGCGAGTCTGACGTGT
TGAAAGTGTTGAAGGAGATAAGGCGTCTAGAGCTAACGCCTTTGTTGTAT
TCTGCTGATAATGTATTGGTGTACAAAAGATCGTCCTACACGGATATGTT
CATGGTTTCCTATGAACCGGAACCGCAAGAAGCTGATTTGGTCACACGAG
CCGTACAGGTGCCGATTCACAAGATTTTGCTGGTTGATGAAACTGGAGGA
GACATACGTCGTTTCAGAAATCACCTCTCCCGTTCGCTGAACAACGTGGT
CACTATCACACAGGCACGACCAGACGTGTTGGAAGTTTTGCCAAAAGGGG
CAAGTAAGGGAAAAGCTCTCCAACACCTGTTGTCTTATTTGCAAATCTCG
AAAGAGAGTGCAATGGCCGTCGGAGATGGAGAGAATGATTTGGAAATGCT
ACAAGTGGCTGGCTTAGCTGTTGCAACAGGAAACGCAGTTCCAACGTTAC
TGGGCGTGGCTCACCATGTTGTTTGTTGCAATGATAGCGGAGCAGTTGCA
GATGCCATTAACAAGTTTGTACTTTAA
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protein sequence of Ggra737.t1

>Ggra737.t1 ID=Ggra737.t1|Name=Ggra737.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MLLFLHPTFQTVIAPPKRLSSISPSVCNLHASIQSSRPSIRIIASDIDGT
LLTSKKRLHPKNEPLVRQAVESGVLFVPATGKSASGALKALGGSLTSFLT
NTQPSMPGIFLNGLLVKANGEVIFERTLRESDVLKVLKEIRRLELTPLLY
SADNVLVYKRSSYTDMFMVSYEPEPQEADLVTRAVQVPIHKILLVDETGG
DIRRFRNHLSRSLNNVVTITQARPDVLEVLPKGASKGKALQHLLSYLQIS
KESAMAVGDGENDLEMLQVAGLAVATGNAVPTLLGVAHHVVCCNDSGAVA
DAINKFVL*
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mRNA from alignment at tig00000204_pilon:53362..54288-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra737.t1 ID=Ggra737.t1|Name=Ggra737.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000204_pilon:53362..54288- (Gracilaria gracilis GNS1m male)
ATGCTGCTCTTTCTTCACCCAACGTTTCAAACGGTTATAGCACCCCCTAA
ACGACTCAGCAGCATATCGCCAAGTGTCTGCAATCTTCACGCATCCATTC
AATCATCTCGTCCGAGTATTCGAATCATAGCTAGTGATATCGATGGAACG
CTTCTCACTTCGAAGAAACGACTTCATCCGAAGAATGAACCCCTTGTGAG
GCAGGCGGTGGAATCAGGTGTTTTGTTTGTTCCGGCCACTGGGAAATCAG
CCAGTGGGGCCCTGAAAGCACTTGGAGGTTCCCTAACTTCCTTTCTGACG
AACACACAGCCGTCCATGCCTGGCATTTTCCTCAATGGCTTATTGGTAAA
GGCGAATGGAGAGGTTATATTTGAGAGAACCCTTCGCGAGTCTGACGTGT
TGAAAGTGTTGAAGGAGATAAGGCGTCTAGAGCTAACGCCTTTGTTGTAT
TCTGCTGATAATGTATTGGTGTACAAAAGATCGTCCTACACGGATATGTT
CATGGTTTCCTATGAACCGGAACCGCAAGAAGCTGATTTGGTCACACGAG
CCGTACAGGTGCCGATTCACAAGATTTTGCTGGTTGATGAAACTGGAGGA
GACATACGTCGTTTCAGAAATCACCTCTCCCGTTCGCTGAACAACGTGGT
CACTATCACACAGGCACGACCAGACGTGTTGGAAGTTTTGCCAAAAGGGG
CAAGTAAGGGAAAAGCTCTCCAACACCTGTTGTCTTATTTGCAAATCTCG
AAAGAGAGTGCAATGGCCGTCGGAGATGGAGAGAATGATTTGGAAATGCT
ACAAGTGGCTGGCTTAGCTGTTGCAACAGGAAACGCAGTTCCAACGTTAC
TGGGCGTGGCTCACCATGTTGTTTGTTGCAATGATAGCGGAGCAGTTGCA
GATGCCATTAACAAGTTTGTACTTTAA
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Coding sequence (CDS) from alignment at tig00000204_pilon:53362..54288-

>Ggra737.t1 ID=Ggra737.t1|Name=Ggra737.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000204_pilon:53362..54288- (Gracilaria gracilis GNS1m male)
ATGCTGCTCTTTCTTCACCCAACGTTTCAAACGGTTATAGCACCCCCTAA
ACGACTCAGCAGCATATCGCCAAGTGTCTGCAATCTTCACGCATCCATTC
AATCATCTCGTCCGAGTATTCGAATCATAGCTAGTGATATCGATGGAACG
CTTCTCACTTCGAAGAAACGACTTCATCCGAAGAATGAACCCCTTGTGAG
GCAGGCGGTGGAATCAGGTGTTTTGTTTGTTCCGGCCACTGGGAAATCAG
CCAGTGGGGCCCTGAAAGCACTTGGAGGTTCCCTAACTTCCTTTCTGACG
AACACACAGCCGTCCATGCCTGGCATTTTCCTCAATGGCTTATTGGTAAA
GGCGAATGGAGAGGTTATATTTGAGAGAACCCTTCGCGAGTCTGACGTGT
TGAAAGTGTTGAAGGAGATAAGGCGTCTAGAGCTAACGCCTTTGTTGTAT
TCTGCTGATAATGTATTGGTGTACAAAAGATCGTCCTACACGGATATGTT
CATGGTTTCCTATGAACCGGAACCGCAAGAAGCTGATTTGGTCACACGAG
CCGTACAGGTGCCGATTCACAAGATTTTGCTGGTTGATGAAACTGGAGGA
GACATACGTCGTTTCAGAAATCACCTCTCCCGTTCGCTGAACAACGTGGT
CACTATCACACAGGCACGACCAGACGTGTTGGAAGTTTTGCCAAAAGGGG
CAAGTAAGGGAAAAGCTCTCCAACACCTGTTGTCTTATTTGCAAATCTCG
AAAGAGAGTGCAATGGCCGTCGGAGATGGAGAGAATGATTTGGAAATGCT
ACAAGTGGCTGGCTTAGCTGTTGCAACAGGAAACGCAGTTCCAACGTTAC
TGGGCGTGGCTCACCATGTTGTTTGTTGCAATGATAGCGGAGCAGTTGCA
GATGCCATTAACAAGTTTGTACTTTAA
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