Ggra7351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7351.t1
Unique NameGgra7351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length520
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:856482..858041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707004.1
Preferred nameCDC20
PFAMsANAPC4_WD40,WD40
Max annot lvl2759|Eukaryota
KEGG koko:K02084,ko:K03363,ko:K06709
KEGG Pathwayko01524,ko04110,ko04111,ko04113,ko04114,ko04115,ko04120,ko04210,ko04214,ko04215,ko05010,ko05012,ko05014,ko05016,ko05134,ko05152,ko05161,ko05166,ko05200,ko05203,ko05222,map01524,map04110,map04111,map04113,map04114,map04115,map04120,map04210,map04214,map04215,map05010,map05012,map05014,map05016,map05134,map05152,map05161,map05166,map05200,map05203,map05222
KEGG ModuleM00389,M00685
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000819,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007062,GO:0007064,GO:0007088,GO:0007096,GO:0007127,GO:0007135,GO:0007143,GO:0007144,GO:0007147,GO:0007275,GO:0007276,GO:0007292,GO:0007346,GO:0007399,GO:0008022,GO:0008150,GO:0008152,GO:0008284,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010646,GO:0010720,GO:0010939,GO:0010941,GO:0010975,GO:0015630,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0019827,GO:0019899,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030162,GO:0030163,GO:0030718,GO:0031145,GO:0031323,GO:0031325,GO:0031344,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031915,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033043,GO:0036211,GO:0040020,GO:0042127,GO:0042826,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043902,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045664,GO:0045787,GO:0048167,GO:0048285,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050773,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050803,GO:0050804,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051276,GO:0051321,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051445,GO:0051446,GO:0051603,GO:0051704,GO:0051726,GO:0051783,GO:0051960,GO:0051962,GO:0060255,GO:0060281,GO:0060282,GO:0060284,GO:0060547,GO:0060548,GO:0061630,GO:0061659,GO:0061982,GO:0061983,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070925,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090128,GO:0090129,GO:0090307,GO:0097150,GO:0098687,GO:0098727,GO:0098813,GO:0099177,GO:0120035,GO:0140013,GO:0140014,GO:0140096,GO:1900193,GO:1900195,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901990,GO:1902494,GO:1902850,GO:1903046,GO:1903047,GO:1903320,GO:1903322,GO:1903429,GO:1903431,GO:1903538,GO:1904146,GO:1904666,GO:1904668,GO:1905879,GO:1905881,GO:1990234,GO:2000026,GO:2000241,GO:2000243
Evalue3.88e-185
EggNOG OGsCOG2319@1|root,KOG0305@2759|Eukaryota
DescriptionCell division cycle
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7351Ggra7351Gracilaria gracilis GNS1m malegenetig00000871_pilon 856482..858041 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7351.t1.stop1Ggra7351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 856482..856484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7351.t1.CDS1Ggra7351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 856482..858041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7351.t1.exon1Ggra7351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 856482..858041 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7351.t1.start1Ggra7351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 858039..858041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7351.t1Ggra7351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 856482..858041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7351.t1 ID=Ggra7351.t1|Name=Ggra7351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=520bp
MNDFNDFSNFSAPVSSGPMPRWQRKALETSQRVNRPTSVSSTTSSKTPKS
GKRSKTPSADRFIPNRKAMNMDVCRMNLNFDSGKENGQNASSSDHQQVSP
SKADKSQQNQNGSLEYSAVLASSLLDLPPSSSADINDLPNSKILAFGDKA
PAAKEGYLNPHRVLYNQNCLGSRVRRSKFRHIPQAPEKILDAPGLLEDFY
LNLVDWGSNNTLAVALAESVYLWNADTGKIEQLCETQQDDCITSVAWIPD
GNYLAIGTNSAEVQIWDVDKMSCTRRMRSHSGRVGALAWNGPLLSSGSRD
SQIHNHDVRIPDHHVATLVAHTQEICGLKWSPNGTQLASGGNDNLVCIWD
NSSAGGRWTPKFQLDQHNAAVKALAWCPWQNNLLATGGGTADRTLRFWNT
ASGACVNSIDTKSQVCSILWSPHEKELVTSHGFSQNQLTVWKYPSLARMA
ELKGHSSRVLHMALSPDGQTVVSAAADETLRFWKVFAGNDSGRSGSRSSQ
FGKSDLSSSRSLRRGVNIR*
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spliced messenger RNA

>Ggra7351.t1 ID=Ggra7351.t1|Name=Ggra7351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000871_pilon:856482..858041- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGACTTCAACGACTTCAGCAACTTCAGTGCCCCGGTTTCATCTGG
ACCCATGCCGAGATGGCAGCGCAAGGCTTTGGAAACCTCGCAACGCGTAA
ATCGCCCAACCTCTGTATCATCTACTACTTCATCCAAAACACCCAAATCC
GGAAAGCGTTCAAAGACTCCGTCTGCAGATCGCTTCATTCCCAACAGAAA
GGCGATGAACATGGACGTCTGCCGCATGAACCTTAACTTTGATTCTGGAA
AAGAAAACGGTCAAAATGCATCTTCGTCTGATCACCAGCAGGTATCTCCG
TCAAAGGCGGACAAATCACAGCAGAACCAGAACGGTTCGCTCGAGTACTC
CGCAGTGCTTGCTTCTTCACTCTTAGATCTTCCTCCGTCTAGCTCGGCGG
ATATCAACGATCTTCCAAACAGTAAGATTCTTGCATTTGGTGACAAGGCC
CCGGCTGCCAAAGAAGGGTATCTCAACCCTCATCGTGTACTTTACAACCA
GAATTGTCTTGGTTCCCGCGTGCGTCGTAGCAAGTTCCGTCATATTCCGC
AAGCGCCAGAGAAGATTTTGGACGCTCCTGGTCTTCTTGAAGATTTCTAT
CTCAACCTTGTCGACTGGGGATCCAATAATACTCTGGCGGTGGCATTGGC
AGAAAGTGTGTACCTGTGGAATGCGGACACTGGTAAGATCGAACAGCTTT
GTGAAACTCAGCAAGATGATTGCATCACTTCGGTAGCATGGATTCCTGAT
GGCAACTATTTGGCAATTGGCACGAATAGTGCAGAAGTGCAGATTTGGGA
CGTCGACAAAATGTCATGTACCCGAAGAATGCGCTCTCATTCTGGGCGAG
TTGGTGCTCTTGCATGGAACGGTCCGCTGTTGTCATCTGGATCCAGGGAT
AGTCAGATCCATAATCATGACGTGAGAATTCCGGATCATCATGTTGCGAC
CTTGGTTGCCCACACTCAGGAAATATGCGGCTTGAAGTGGAGTCCAAATG
GGACACAACTGGCCTCCGGTGGTAACGACAATCTTGTTTGCATCTGGGAC
AACTCAAGTGCAGGTGGTCGATGGACACCGAAGTTCCAGTTGGATCAGCA
CAATGCCGCCGTGAAAGCTCTTGCTTGGTGTCCGTGGCAGAACAATTTGC
TCGCTACCGGTGGTGGAACTGCCGATCGTACTTTGCGATTCTGGAACACC
GCCAGTGGTGCATGTGTGAACTCAATTGACACAAAGTCCCAAGTGTGCTC
CATTCTGTGGTCCCCTCACGAGAAGGAACTGGTCACGAGTCATGGTTTCT
CCCAAAATCAGCTCACTGTCTGGAAGTATCCTTCCCTTGCGAGAATGGCC
GAACTGAAGGGGCACTCGTCGCGCGTTCTGCACATGGCTCTTAGCCCGGA
TGGTCAAACTGTAGTATCCGCAGCTGCCGATGAAACTCTTCGATTCTGGA
AGGTGTTCGCAGGAAATGATTCAGGGCGCTCGGGAAGCCGATCGAGTCAG
TTTGGAAAGAGTGATCTTTCTTCATCTCGAAGTCTGCGCCGAGGCGTGAA
TATCCGATGA
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protein sequence of Ggra7351.t1

>Ggra7351.t1 ID=Ggra7351.t1|Name=Ggra7351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=520bp
MNDFNDFSNFSAPVSSGPMPRWQRKALETSQRVNRPTSVSSTTSSKTPKS
GKRSKTPSADRFIPNRKAMNMDVCRMNLNFDSGKENGQNASSSDHQQVSP
SKADKSQQNQNGSLEYSAVLASSLLDLPPSSSADINDLPNSKILAFGDKA
PAAKEGYLNPHRVLYNQNCLGSRVRRSKFRHIPQAPEKILDAPGLLEDFY
LNLVDWGSNNTLAVALAESVYLWNADTGKIEQLCETQQDDCITSVAWIPD
GNYLAIGTNSAEVQIWDVDKMSCTRRMRSHSGRVGALAWNGPLLSSGSRD
SQIHNHDVRIPDHHVATLVAHTQEICGLKWSPNGTQLASGGNDNLVCIWD
NSSAGGRWTPKFQLDQHNAAVKALAWCPWQNNLLATGGGTADRTLRFWNT
ASGACVNSIDTKSQVCSILWSPHEKELVTSHGFSQNQLTVWKYPSLARMA
ELKGHSSRVLHMALSPDGQTVVSAAADETLRFWKVFAGNDSGRSGSRSSQ
FGKSDLSSSRSLRRGVNIR*
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mRNA from alignment at tig00000871_pilon:856482..858041-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7351.t1 ID=Ggra7351.t1|Name=Ggra7351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00000871_pilon:856482..858041- (Gracilaria gracilis GNS1m male)
ATGAATGACTTCAACGACTTCAGCAACTTCAGTGCCCCGGTTTCATCTGG
ACCCATGCCGAGATGGCAGCGCAAGGCTTTGGAAACCTCGCAACGCGTAA
ATCGCCCAACCTCTGTATCATCTACTACTTCATCCAAAACACCCAAATCC
GGAAAGCGTTCAAAGACTCCGTCTGCAGATCGCTTCATTCCCAACAGAAA
GGCGATGAACATGGACGTCTGCCGCATGAACCTTAACTTTGATTCTGGAA
AAGAAAACGGTCAAAATGCATCTTCGTCTGATCACCAGCAGGTATCTCCG
TCAAAGGCGGACAAATCACAGCAGAACCAGAACGGTTCGCTCGAGTACTC
CGCAGTGCTTGCTTCTTCACTCTTAGATCTTCCTCCGTCTAGCTCGGCGG
ATATCAACGATCTTCCAAACAGTAAGATTCTTGCATTTGGTGACAAGGCC
CCGGCTGCCAAAGAAGGGTATCTCAACCCTCATCGTGTACTTTACAACCA
GAATTGTCTTGGTTCCCGCGTGCGTCGTAGCAAGTTCCGTCATATTCCGC
AAGCGCCAGAGAAGATTTTGGACGCTCCTGGTCTTCTTGAAGATTTCTAT
CTCAACCTTGTCGACTGGGGATCCAATAATACTCTGGCGGTGGCATTGGC
AGAAAGTGTGTACCTGTGGAATGCGGACACTGGTAAGATCGAACAGCTTT
GTGAAACTCAGCAAGATGATTGCATCACTTCGGTAGCATGGATTCCTGAT
GGCAACTATTTGGCAATTGGCACGAATAGTGCAGAAGTGCAGATTTGGGA
CGTCGACAAAATGTCATGTACCCGAAGAATGCGCTCTCATTCTGGGCGAG
TTGGTGCTCTTGCATGGAACGGTCCGCTGTTGTCATCTGGATCCAGGGAT
AGTCAGATCCATAATCATGACGTGAGAATTCCGGATCATCATGTTGCGAC
CTTGGTTGCCCACACTCAGGAAATATGCGGCTTGAAGTGGAGTCCAAATG
GGACACAACTGGCCTCCGGTGGTAACGACAATCTTGTTTGCATCTGGGAC
AACTCAAGTGCAGGTGGTCGATGGACACCGAAGTTCCAGTTGGATCAGCA
CAATGCCGCCGTGAAAGCTCTTGCTTGGTGTCCGTGGCAGAACAATTTGC
TCGCTACCGGTGGTGGAACTGCCGATCGTACTTTGCGATTCTGGAACACC
GCCAGTGGTGCATGTGTGAACTCAATTGACACAAAGTCCCAAGTGTGCTC
CATTCTGTGGTCCCCTCACGAGAAGGAACTGGTCACGAGTCATGGTTTCT
CCCAAAATCAGCTCACTGTCTGGAAGTATCCTTCCCTTGCGAGAATGGCC
GAACTGAAGGGGCACTCGTCGCGCGTTCTGCACATGGCTCTTAGCCCGGA
TGGTCAAACTGTAGTATCCGCAGCTGCCGATGAAACTCTTCGATTCTGGA
AGGTGTTCGCAGGAAATGATTCAGGGCGCTCGGGAAGCCGATCGAGTCAG
TTTGGAAAGAGTGATCTTTCTTCATCTCGAAGTCTGCGCCGAGGCGTGAA
TATCCGATGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:856482..858041-

>Ggra7351.t1 ID=Ggra7351.t1|Name=Ggra7351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1560bp|location=Sequence derived from alignment at tig00000871_pilon:856482..858041- (Gracilaria gracilis GNS1m male)
ATGAATGACTTCAACGACTTCAGCAACTTCAGTGCCCCGGTTTCATCTGG
ACCCATGCCGAGATGGCAGCGCAAGGCTTTGGAAACCTCGCAACGCGTAA
ATCGCCCAACCTCTGTATCATCTACTACTTCATCCAAAACACCCAAATCC
GGAAAGCGTTCAAAGACTCCGTCTGCAGATCGCTTCATTCCCAACAGAAA
GGCGATGAACATGGACGTCTGCCGCATGAACCTTAACTTTGATTCTGGAA
AAGAAAACGGTCAAAATGCATCTTCGTCTGATCACCAGCAGGTATCTCCG
TCAAAGGCGGACAAATCACAGCAGAACCAGAACGGTTCGCTCGAGTACTC
CGCAGTGCTTGCTTCTTCACTCTTAGATCTTCCTCCGTCTAGCTCGGCGG
ATATCAACGATCTTCCAAACAGTAAGATTCTTGCATTTGGTGACAAGGCC
CCGGCTGCCAAAGAAGGGTATCTCAACCCTCATCGTGTACTTTACAACCA
GAATTGTCTTGGTTCCCGCGTGCGTCGTAGCAAGTTCCGTCATATTCCGC
AAGCGCCAGAGAAGATTTTGGACGCTCCTGGTCTTCTTGAAGATTTCTAT
CTCAACCTTGTCGACTGGGGATCCAATAATACTCTGGCGGTGGCATTGGC
AGAAAGTGTGTACCTGTGGAATGCGGACACTGGTAAGATCGAACAGCTTT
GTGAAACTCAGCAAGATGATTGCATCACTTCGGTAGCATGGATTCCTGAT
GGCAACTATTTGGCAATTGGCACGAATAGTGCAGAAGTGCAGATTTGGGA
CGTCGACAAAATGTCATGTACCCGAAGAATGCGCTCTCATTCTGGGCGAG
TTGGTGCTCTTGCATGGAACGGTCCGCTGTTGTCATCTGGATCCAGGGAT
AGTCAGATCCATAATCATGACGTGAGAATTCCGGATCATCATGTTGCGAC
CTTGGTTGCCCACACTCAGGAAATATGCGGCTTGAAGTGGAGTCCAAATG
GGACACAACTGGCCTCCGGTGGTAACGACAATCTTGTTTGCATCTGGGAC
AACTCAAGTGCAGGTGGTCGATGGACACCGAAGTTCCAGTTGGATCAGCA
CAATGCCGCCGTGAAAGCTCTTGCTTGGTGTCCGTGGCAGAACAATTTGC
TCGCTACCGGTGGTGGAACTGCCGATCGTACTTTGCGATTCTGGAACACC
GCCAGTGGTGCATGTGTGAACTCAATTGACACAAAGTCCCAAGTGTGCTC
CATTCTGTGGTCCCCTCACGAGAAGGAACTGGTCACGAGTCATGGTTTCT
CCCAAAATCAGCTCACTGTCTGGAAGTATCCTTCCCTTGCGAGAATGGCC
GAACTGAAGGGGCACTCGTCGCGCGTTCTGCACATGGCTCTTAGCCCGGA
TGGTCAAACTGTAGTATCCGCAGCTGCCGATGAAACTCTTCGATTCTGGA
AGGTGTTCGCAGGAAATGATTCAGGGCGCTCGGGAAGCCGATCGAGTCAG
TTTGGAAAGAGTGATCTTTCTTCATCTCGAAGTCTGCGCCGAGGCGTGAA
TATCCGATGA
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