Ggra734.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra734.t1
Unique NameGgra734.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:45213..46073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra734Ggra734Gracilaria gracilis GNS1m malegenetig00000204_pilon 45213..46073 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra734.t1Ggra734.t1Gracilaria gracilis GNS1m malepolypeptidetig00000204_pilon 45213..46073 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra734.t1.stop1Ggra734.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000204_pilon 45213..45215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra734.t1.CDS1Ggra734.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000204_pilon 45213..45715 -
Ggra734.t1.CDS2Ggra734.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000204_pilon 45935..46073 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra734.t1.exon1Ggra734.t1.exon1Gracilaria gracilis GNS1m maleexontig00000204_pilon 45213..45715 -
Ggra734.t1.exon2Ggra734.t1.exon2Gracilaria gracilis GNS1m maleexontig00000204_pilon 45935..46073 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra734.t1.intron1Ggra734.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000204_pilon 45716..45934 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra734.t1.start1Ggra734.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000204_pilon 46071..46073 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra734.t1 ID=Ggra734.t1|Name=Ggra734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MLFSSLFPCEEDGEGVSEIVGDALRVPALIDTDGDVDETTCDILIFDGTA
AEIDGDAKPLGEADALEDSRGEADTLEDIRGEADALEDIRGEADALEDIR
GEAEDEGVAVVEDEGSTLYDALGEFEAEIVGVGNASVTDIDTEGVAVVVG
VAEGKLILLLDAVTEGAIVVVGVVEGPTLCEDDILGIIEVVEEGNGLSDN
EAVGVTLFDGETD*
back to top

spliced messenger RNA

>Ggra734.t1 ID=Ggra734.t1|Name=Ggra734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000204_pilon:45213..46073- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGTTCTCATCGTTGTTTCCCTGTGAAGAAGACGGCGAAGGAGTTAG
TGAAATTGTTGGAGATGCACTAAGAGTTCCTGCGCTCATCGATACCGATG
GCGATGTGGATGAGACTACTTGTGATATACTAATCTTCGACGGTACAGCT
GCAGAGATCGATGGTGATGCCAAGCCGCTTGGAGAAGCCGACGCACTTGA
AGATAGCAGAGGGGAAGCCGACACACTTGAAGATATCAGAGGGGAAGCCG
ACGCACTTGAAGATATCAGAGGGGAAGCCGACGCACTTGAAGATATCAGA
GGGGAAGCCGAAGACGAAGGAGTCGCAGTCGTCGAGGATGAGGGCTCCAC
ACTGTACGACGCGCTTGGTGAATTTGAAGCCGAGATTGTTGGAGTAGGCA
ATGCATCCGTAACCGATATCGATACTGAAGGTGTTGCAGTTGTGGTCGGC
GTTGCTGAAGGTAAACTAATACTGCTGCTCGATGCGGTCACAGAGGGTGC
CATAGTTGTGGTAGGCGTCGTTGAAGGTCCCACACTTTGTGAGGACGACA
TACTTGGCATCATCGAAGTCGTGGAGGAGGGCAATGGGCTTTCCGACAAC
GAAGCAGTAGGGGTCACACTGTTTGACGGCGAGACAGACTGA
back to top

protein sequence of Ggra734.t1

>Ggra734.t1 ID=Ggra734.t1|Name=Ggra734.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MLFSSLFPCEEDGEGVSEIVGDALRVPALIDTDGDVDETTCDILIFDGTA
AEIDGDAKPLGEADALEDSRGEADTLEDIRGEADALEDIRGEADALEDIR
GEAEDEGVAVVEDEGSTLYDALGEFEAEIVGVGNASVTDIDTEGVAVVVG
VAEGKLILLLDAVTEGAIVVVGVVEGPTLCEDDILGIIEVVEEGNGLSDN
EAVGVTLFDGETD*
back to top

mRNA from alignment at tig00000204_pilon:45213..46073-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra734.t1 ID=Ggra734.t1|Name=Ggra734.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00000204_pilon:45213..46073- (Gracilaria gracilis GNS1m male)
ATGTTGTTCTCATCGTTGTTTCCCTGTGAAGAAGACGGCGAAGGAGTTAG
TGAAATTGTTGGAGATGCACTAAGAGTTCCTGCGCTCATCGATACCGATG
GCGATGTGGATGAGACTACTTGTGATATACTAATCTTCGGTGTCTCCGAT
GGTGATGGGAAGGTTGTAGCAGATGATTGAACACTTGCTTTCGGACTCGT
CGAAACAGTTTGGGATGCAATCGGTGTCACAGTCATTGGAGCAGACGCGG
AGAAGCTCGGAGAACCCGTCATCGAAGGCGATGTGCTCTCCAAAATAGCT
GTAGAAGAAGCTACTACAGATGGCGACGCTGCTGATTGACTTGCAGAAAC
GCTTGCAGACGGTACAGCTGCAGAGATCGATGGTGATGCCAAGCCGCTTG
GAGAAGCCGACGCACTTGAAGATAGCAGAGGGGAAGCCGACACACTTGAA
GATATCAGAGGGGAAGCCGACGCACTTGAAGATATCAGAGGGGAAGCCGA
CGCACTTGAAGATATCAGAGGGGAAGCCGAAGACGAAGGAGTCGCAGTCG
TCGAGGATGAGGGCTCCACACTGTACGACGCGCTTGGTGAATTTGAAGCC
GAGATTGTTGGAGTAGGCAATGCATCCGTAACCGATATCGATACTGAAGG
TGTTGCAGTTGTGGTCGGCGTTGCTGAAGGTAAACTAATACTGCTGCTCG
ATGCGGTCACAGAGGGTGCCATAGTTGTGGTAGGCGTCGTTGAAGGTCCC
ACACTTTGTGAGGACGACATACTTGGCATCATCGAAGTCGTGGAGGAGGG
CAATGGGCTTTCCGACAACGAAGCAGTAGGGGTCACACTGTTTGACGGCG
AGACAGACTGA
back to top

Coding sequence (CDS) from alignment at tig00000204_pilon:45213..46073-

>Ggra734.t1 ID=Ggra734.t1|Name=Ggra734.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000204_pilon:45213..46073- (Gracilaria gracilis GNS1m male)
ATGTTGTTCTCATCGTTGTTTCCCTGTGAAGAAGACGGCGAAGGAGTTAG
TGAAATTGTTGGAGATGCACTAAGAGTTCCTGCGCTCATCGATACCGATG
GCGATGTGGATGAGACTACTTGTGATATACTAATCTTCGACGGTACAGCT
GCAGAGATCGATGGTGATGCCAAGCCGCTTGGAGAAGCCGACGCACTTGA
AGATAGCAGAGGGGAAGCCGACACACTTGAAGATATCAGAGGGGAAGCCG
ACGCACTTGAAGATATCAGAGGGGAAGCCGACGCACTTGAAGATATCAGA
GGGGAAGCCGAAGACGAAGGAGTCGCAGTCGTCGAGGATGAGGGCTCCAC
ACTGTACGACGCGCTTGGTGAATTTGAAGCCGAGATTGTTGGAGTAGGCA
ATGCATCCGTAACCGATATCGATACTGAAGGTGTTGCAGTTGTGGTCGGC
GTTGCTGAAGGTAAACTAATACTGCTGCTCGATGCGGTCACAGAGGGTGC
CATAGTTGTGGTAGGCGTCGTTGAAGGTCCCACACTTTGTGAGGACGACA
TACTTGGCATCATCGAAGTCGTGGAGGAGGGCAATGGGCTTTCCGACAAC
GAAGCAGTAGGGGTCACACTGTTTGACGGCGAGACAGACTGA
back to top