Ggra7334.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7334.t1
Unique NameGgra7334.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length353
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:803370..804428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703542.1
PFAMsHMGL-like
Max annot lvl2759|Eukaryota
KEGG rclassRC00502,RC00503,RC01118,RC01946
KEGG koko:K01640
KEGG ReactionR01360,R08090
KEGG Pathwayko00072,ko00280,ko00281,ko00650,ko01100,ko04146,map00072,map00280,map00281,map00650,map01100,map04146
KEGG ModuleM00036,M00088
GOsGO:0003674,GO:0003824,GO:0004419,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0006082,GO:0006520,GO:0006551,GO:0006807,GO:0008150,GO:0008152,GO:0009081,GO:0009987,GO:0016829,GO:0016830,GO:0016833,GO:0019752,GO:0031974,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901564,GO:1901605
Evalue5.86e-121
EggNOG OGsCOG0119@1|root,KOG2368@2759|Eukaryota
EC4.1.3.4
Descriptionhydroxymethylglutaryl-CoA lyase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7334Ggra7334Gracilaria gracilis GNS1m malegenetig00000871_pilon 803370..804428 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7334.t1.stop1Ggra7334.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 803370..803372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7334.t1.CDS1Ggra7334.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 803370..804428 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7334.t1.exon1Ggra7334.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 803370..804428 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7334.t1.start1Ggra7334.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 804426..804428 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7334.t1Ggra7334.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 803370..804428 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7334.t1 ID=Ggra7334.t1|Name=Ggra7334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp
MSPSERLVEHPSAINSLRSHFSSSHSRSVSVPRCPVSNRLPKSVRIVEVG
PRDGLQNESRLVDASRKIALVHDLVDAGLRTVEVTAFVSPRRVPQLADST
AVMSAINKKKGVSYPVLVPNLKGFHAARAVGAEEIAVFASATEQFSQKNI
NCSIQQSLDRFRTVTSFAHLHRIKVRAYISCVVGCPYEGAVDPEAVANVA
VALREMGCYEISLGDTIGVGNPKSVVQVILAVVRRGIPVSALAIHCHDTR
GMALANVLAAMSVGVSVIDSSVAGLGGCPFAPGAAGNLATEDLVYMLQGM
DIDIGPIDLEKLAKVGRRICSYLERETCSRLSTASRFTAFKRSTNIPSSA
SL*
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spliced messenger RNA

>Ggra7334.t1 ID=Ggra7334.t1|Name=Ggra7334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000871_pilon:803370..804428- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCATCTGAACGTTTGGTCGAGCATCCGTCTGCTATCAACTCGCT
CCGCTCGCATTTCTCATCAAGTCATTCTCGATCTGTTTCTGTTCCCCGCT
GTCCCGTTTCAAACCGATTGCCCAAATCTGTTCGAATTGTCGAAGTCGGT
CCTCGCGATGGGCTTCAAAATGAATCCCGCCTCGTGGACGCCTCCCGTAA
AATTGCTCTTGTTCACGATCTCGTTGACGCTGGTTTAAGAACAGTTGAGG
TAACAGCTTTTGTCAGTCCGCGCCGCGTTCCTCAATTAGCTGATTCAACC
GCTGTAATGTCTGCTATAAACAAGAAGAAGGGTGTATCCTACCCTGTTCT
TGTTCCTAATCTTAAAGGCTTTCATGCTGCGCGTGCTGTGGGTGCTGAGG
AAATCGCCGTTTTTGCGAGCGCTACCGAACAATTCTCACAAAAGAACATA
AATTGTTCCATTCAACAATCACTCGACCGCTTCAGAACAGTCACCTCCTT
CGCACATTTGCATCGCATCAAAGTGCGCGCGTACATCTCTTGCGTTGTTG
GGTGCCCGTATGAAGGTGCAGTTGACCCGGAAGCAGTGGCCAATGTCGCC
GTAGCTTTGCGGGAAATGGGATGCTATGAGATTTCTCTGGGTGACACAAT
TGGAGTCGGAAATCCCAAGTCAGTTGTGCAAGTGATTCTTGCTGTGGTAC
GGAGGGGAATTCCCGTATCAGCACTGGCAATACATTGCCATGACACACGG
GGCATGGCTCTAGCAAATGTTCTGGCTGCCATGAGTGTTGGTGTCAGCGT
AATTGATTCGAGTGTTGCTGGACTCGGAGGCTGTCCTTTTGCTCCTGGTG
CAGCTGGAAACTTAGCTACCGAAGACCTTGTTTACATGCTGCAAGGCATG
GACATCGACATTGGCCCTATAGATCTGGAGAAGCTTGCGAAAGTCGGACG
AAGAATTTGTTCGTACCTTGAACGCGAAACCTGTTCTAGGCTTTCCACAG
CTTCCAGATTTACGGCATTCAAACGATCTACAAATATCCCTTCTTCAGCT
TCCTTGTGA
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protein sequence of Ggra7334.t1

>Ggra7334.t1 ID=Ggra7334.t1|Name=Ggra7334.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=353bp
MSPSERLVEHPSAINSLRSHFSSSHSRSVSVPRCPVSNRLPKSVRIVEVG
PRDGLQNESRLVDASRKIALVHDLVDAGLRTVEVTAFVSPRRVPQLADST
AVMSAINKKKGVSYPVLVPNLKGFHAARAVGAEEIAVFASATEQFSQKNI
NCSIQQSLDRFRTVTSFAHLHRIKVRAYISCVVGCPYEGAVDPEAVANVA
VALREMGCYEISLGDTIGVGNPKSVVQVILAVVRRGIPVSALAIHCHDTR
GMALANVLAAMSVGVSVIDSSVAGLGGCPFAPGAAGNLATEDLVYMLQGM
DIDIGPIDLEKLAKVGRRICSYLERETCSRLSTASRFTAFKRSTNIPSSA
SL*
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mRNA from alignment at tig00000871_pilon:803370..804428-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7334.t1 ID=Ggra7334.t1|Name=Ggra7334.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1059bp|location=Sequence derived from alignment at tig00000871_pilon:803370..804428- (Gracilaria gracilis GNS1m male)
ATGTCACCATCTGAACGTTTGGTCGAGCATCCGTCTGCTATCAACTCGCT
CCGCTCGCATTTCTCATCAAGTCATTCTCGATCTGTTTCTGTTCCCCGCT
GTCCCGTTTCAAACCGATTGCCCAAATCTGTTCGAATTGTCGAAGTCGGT
CCTCGCGATGGGCTTCAAAATGAATCCCGCCTCGTGGACGCCTCCCGTAA
AATTGCTCTTGTTCACGATCTCGTTGACGCTGGTTTAAGAACAGTTGAGG
TAACAGCTTTTGTCAGTCCGCGCCGCGTTCCTCAATTAGCTGATTCAACC
GCTGTAATGTCTGCTATAAACAAGAAGAAGGGTGTATCCTACCCTGTTCT
TGTTCCTAATCTTAAAGGCTTTCATGCTGCGCGTGCTGTGGGTGCTGAGG
AAATCGCCGTTTTTGCGAGCGCTACCGAACAATTCTCACAAAAGAACATA
AATTGTTCCATTCAACAATCACTCGACCGCTTCAGAACAGTCACCTCCTT
CGCACATTTGCATCGCATCAAAGTGCGCGCGTACATCTCTTGCGTTGTTG
GGTGCCCGTATGAAGGTGCAGTTGACCCGGAAGCAGTGGCCAATGTCGCC
GTAGCTTTGCGGGAAATGGGATGCTATGAGATTTCTCTGGGTGACACAAT
TGGAGTCGGAAATCCCAAGTCAGTTGTGCAAGTGATTCTTGCTGTGGTAC
GGAGGGGAATTCCCGTATCAGCACTGGCAATACATTGCCATGACACACGG
GGCATGGCTCTAGCAAATGTTCTGGCTGCCATGAGTGTTGGTGTCAGCGT
AATTGATTCGAGTGTTGCTGGACTCGGAGGCTGTCCTTTTGCTCCTGGTG
CAGCTGGAAACTTAGCTACCGAAGACCTTGTTTACATGCTGCAAGGCATG
GACATCGACATTGGCCCTATAGATCTGGAGAAGCTTGCGAAAGTCGGACG
AAGAATTTGTTCGTACCTTGAACGCGAAACCTGTTCTAGGCTTTCCACAG
CTTCCAGATTTACGGCATTCAAACGATCTACAAATATCCCTTCTTCAGCT
TCCTTGTGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:803370..804428-

>Ggra7334.t1 ID=Ggra7334.t1|Name=Ggra7334.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1059bp|location=Sequence derived from alignment at tig00000871_pilon:803370..804428- (Gracilaria gracilis GNS1m male)
ATGTCACCATCTGAACGTTTGGTCGAGCATCCGTCTGCTATCAACTCGCT
CCGCTCGCATTTCTCATCAAGTCATTCTCGATCTGTTTCTGTTCCCCGCT
GTCCCGTTTCAAACCGATTGCCCAAATCTGTTCGAATTGTCGAAGTCGGT
CCTCGCGATGGGCTTCAAAATGAATCCCGCCTCGTGGACGCCTCCCGTAA
AATTGCTCTTGTTCACGATCTCGTTGACGCTGGTTTAAGAACAGTTGAGG
TAACAGCTTTTGTCAGTCCGCGCCGCGTTCCTCAATTAGCTGATTCAACC
GCTGTAATGTCTGCTATAAACAAGAAGAAGGGTGTATCCTACCCTGTTCT
TGTTCCTAATCTTAAAGGCTTTCATGCTGCGCGTGCTGTGGGTGCTGAGG
AAATCGCCGTTTTTGCGAGCGCTACCGAACAATTCTCACAAAAGAACATA
AATTGTTCCATTCAACAATCACTCGACCGCTTCAGAACAGTCACCTCCTT
CGCACATTTGCATCGCATCAAAGTGCGCGCGTACATCTCTTGCGTTGTTG
GGTGCCCGTATGAAGGTGCAGTTGACCCGGAAGCAGTGGCCAATGTCGCC
GTAGCTTTGCGGGAAATGGGATGCTATGAGATTTCTCTGGGTGACACAAT
TGGAGTCGGAAATCCCAAGTCAGTTGTGCAAGTGATTCTTGCTGTGGTAC
GGAGGGGAATTCCCGTATCAGCACTGGCAATACATTGCCATGACACACGG
GGCATGGCTCTAGCAAATGTTCTGGCTGCCATGAGTGTTGGTGTCAGCGT
AATTGATTCGAGTGTTGCTGGACTCGGAGGCTGTCCTTTTGCTCCTGGTG
CAGCTGGAAACTTAGCTACCGAAGACCTTGTTTACATGCTGCAAGGCATG
GACATCGACATTGGCCCTATAGATCTGGAGAAGCTTGCGAAAGTCGGACG
AAGAATTTGTTCGTACCTTGAACGCGAAACCTGTTCTAGGCTTTCCACAG
CTTCCAGATTTACGGCATTCAAACGATCTACAAATATCCCTTCTTCAGCT
TCCTTGTGA
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