Ggra729.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra729.t1
Unique NameGgra729.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length293
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:32367..33781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM052CT
PFAMsHexapep
Max annot lvl2759|Eukaryota
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004089,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009853,GO:0009900,GO:0009901,GO:0009908,GO:0009987,GO:0010033,GO:0016020,GO:0016043,GO:0016829,GO:0016835,GO:0016836,GO:0019222,GO:0019866,GO:0022414,GO:0022607,GO:0030964,GO:0031090,GO:0031323,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0042221,GO:0042802,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051259,GO:0051260,GO:0061458,GO:0065003,GO:0065007,GO:0070206,GO:0070207,GO:0070469,GO:0071840,GO:0090567,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0099402,GO:1902494,GO:1990204,GO:2000377
Evalue7.58e-46
EggNOG OGsCOG0663@1|root,2QTES@2759|Eukaryota
Descriptioncarbonate dehydratase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra729Ggra729Gracilaria gracilis GNS1m malegenetig00000204_pilon 32367..33781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra729.t1Ggra729.t1Gracilaria gracilis GNS1m malepolypeptidetig00000204_pilon 32367..33781 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra729.t1.start1Ggra729.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000204_pilon 32367..32369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra729.t1.CDS1Ggra729.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000204_pilon 32367..32481 +
Ggra729.t1.CDS2Ggra729.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000204_pilon 32576..33246 +
Ggra729.t1.CDS3Ggra729.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000204_pilon 33523..33565 +
Ggra729.t1.CDS4Ggra729.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000204_pilon 33732..33781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra729.t1.exon1Ggra729.t1.exon1Gracilaria gracilis GNS1m maleexontig00000204_pilon 32367..32481 +
Ggra729.t1.exon2Ggra729.t1.exon2Gracilaria gracilis GNS1m maleexontig00000204_pilon 32576..33246 +
Ggra729.t1.exon3Ggra729.t1.exon3Gracilaria gracilis GNS1m maleexontig00000204_pilon 33523..33565 +
Ggra729.t1.exon4Ggra729.t1.exon4Gracilaria gracilis GNS1m maleexontig00000204_pilon 33732..33781 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra729.t1.intron1Ggra729.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000204_pilon 32482..32575 +
Ggra729.t1.intron2Ggra729.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000204_pilon 33247..33522 +
Ggra729.t1.intron3Ggra729.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000204_pilon 33566..33731 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra729.t1.stop1Ggra729.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000204_pilon 33779..33781 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra729.t1 ID=Ggra729.t1|Name=Ggra729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp
MSLMRRAAYAAGMMIRETGQALDRLGCSLQGKYAYVEQLSRHRQIMNLGD
SKPIISTPAFIAPSASLIGNVELSPSSSVWYGAVLRADSAPILIGPRASI
GDRAVVRGASHVDADAIVHPGAVIDSAQVGARAVVGASAVVAPGAIVAEQ
SVLRDGSYLPEGTCTSPGEIWSGSPAQCDRALTQDEINAIATNVEDVVTL
AGAHATECGKTHEQIEAEKLRQGLMEERSEDYNSHLGLLGREKEIVETQA
TLIEQDREEQRKTSFPIGSAVTATIKNVLLKTIVTYDDHRLM*
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spliced messenger RNA

>Ggra729.t1 ID=Ggra729.t1|Name=Ggra729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=879bp|location=Sequence derived from alignment at tig00000204_pilon:32367..33781+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCATGCGGCGCGCTGCGTACGCGGCGGGCATGATGATCCGCGA
GACGGGACAGGCGCTAGACCGTCTGGGCTGCAGCCTACAGGGCAAGTACG
CCTATGTTGAGCAGCTGAGCAGGCATCGTCAGATCATGAATCTTGGCGAC
TCCAAGCCCATCATTTCCACCCCCGCCTTCATTGCGCCTTCCGCGTCGCT
CATTGGCAACGTAGAGTTGTCGCCGTCGTCTTCCGTGTGGTATGGCGCCG
TGCTCCGTGCCGATAGCGCTCCCATACTAATTGGCCCACGCGCGTCCATT
GGCGATCGCGCCGTTGTTCGAGGCGCGTCCCATGTCGATGCCGACGCTAT
CGTCCACCCGGGCGCTGTCATCGATTCTGCTCAAGTTGGCGCGCGTGCCG
TTGTGGGCGCATCTGCTGTGGTTGCCCCCGGCGCCATTGTCGCAGAGCAA
TCTGTTCTGCGCGATGGCTCTTACTTGCCCGAAGGCACTTGCACATCACC
AGGTGAGATTTGGTCCGGCTCGCCGGCGCAGTGTGACCGTGCGCTCACGC
AAGATGAAATCAATGCTATAGCTACCAATGTCGAGGATGTGGTTACCCTG
GCAGGCGCACACGCAACTGAATGTGGCAAAACGCATGAACAGATTGAAGC
GGAGAAATTGAGACAGGGACTCATGGAGGAAAGATCTGAGGATTATAACA
GCCACCTAGGATTACTCGGCAGGGAAAAGGAGATTGTCGAGACTCAAGCT
ACTCTCATTGAGCAGGATCGTGAGGAACAGCGCAAGACATCGTTTCCAAT
TGGCTCTGCTGTAACCGCAACAATTAAAAATGTCTTGTTGAAAACGATCG
TGACGTATGATGACCACAGATTGATGTGA
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protein sequence of Ggra729.t1

>Ggra729.t1 ID=Ggra729.t1|Name=Ggra729.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=293bp
MSLMRRAAYAAGMMIRETGQALDRLGCSLQGKYAYVEQLSRHRQIMNLGD
SKPIISTPAFIAPSASLIGNVELSPSSSVWYGAVLRADSAPILIGPRASI
GDRAVVRGASHVDADAIVHPGAVIDSAQVGARAVVGASAVVAPGAIVAEQ
SVLRDGSYLPEGTCTSPGEIWSGSPAQCDRALTQDEINAIATNVEDVVTL
AGAHATECGKTHEQIEAEKLRQGLMEERSEDYNSHLGLLGREKEIVETQA
TLIEQDREEQRKTSFPIGSAVTATIKNVLLKTIVTYDDHRLM*
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mRNA from alignment at tig00000204_pilon:32367..33781+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra729.t1 ID=Ggra729.t1|Name=Ggra729.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1415bp|location=Sequence derived from alignment at tig00000204_pilon:32367..33781+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCATGCGGCGCGCTGCGTACGCGGCGGGCATGATGATCCGCGA
GACGGGACAGGCGCTAGACCGTCTGGGCTGCAGCCTACAGGGCAAGTACG
CCTATGTTGAGCAGCGTAAGTGTGCGCCGTTCCATCCAGCGGCTTTCCCA
TCACTGCGTGCTCCATGTTTCGTTCTAACGTCTCCATTCGCTTCTTTGTG
AGTGCGTAGTGAGCAGGCATCGTCAGATCATGAATCTTGGCGACTCCAAG
CCCATCATTTCCACCCCCGCCTTCATTGCGCCTTCCGCGTCGCTCATTGG
CAACGTAGAGTTGTCGCCGTCGTCTTCCGTGTGGTATGGCGCCGTGCTCC
GTGCCGATAGCGCTCCCATACTAATTGGCCCACGCGCGTCCATTGGCGAT
CGCGCCGTTGTTCGAGGCGCGTCCCATGTCGATGCCGACGCTATCGTCCA
CCCGGGCGCTGTCATCGATTCTGCTCAAGTTGGCGCGCGTGCCGTTGTGG
GCGCATCTGCTGTGGTTGCCCCCGGCGCCATTGTCGCAGAGCAATCTGTT
CTGCGCGATGGCTCTTACTTGCCCGAAGGCACTTGCACATCACCAGGTGA
GATTTGGTCCGGCTCGCCGGCGCAGTGTGACCGTGCGCTCACGCAAGATG
AAATCAATGCTATAGCTACCAATGTCGAGGATGTGGTTACCCTGGCAGGC
GCACACGCAACTGAATGTGGCAAAACGCATGAACAGATTGAAGCGGAGAA
ATTGAGACAGGGACTCATGGAGGAAAGATCTGAGGATTATAACAGCCACC
TAGGATTACTCGGCAGGGAAAAGGAGATTGTCGAGACTCAAGCTACTCTC
ATTGAGCAGGATCGTGAGGAACAGCGCAAGGTTGGTGCTGGTTAAGTATG
TTTTAGTATATGTGTGCCTCCCTCCCTGCACATGCTTGTGGTTCCCAGGC
TGCCGTGCTGCGTGTTGTATGCCACATATTGGTTTTTGTTGATGTGCAGC
TGCCGGGTAAATTCTCACTAGTCCTCTCCTGCCCTCAGCGAGCAACGTTA
TCTTTACTGTCGTCAGTTTAGCACTTCTCGTCGTTCGTCGTGAGCTTTTC
GCCACAGGCGTAGCTATGCTAAGTTTCCCGAAGGAGTAATACCGCGTTAC
GGGTAGACATCGTTTCCAATTGGCTCTGCTGTAACCGCAACAATTAAAAG
TATGTTGTGTCCGATTGATACCGAGACGCACGATATTCGTTCAAATGGGC
CGAATAGGATGCGTTGGATTCGGACGAAGGACTGTGTCGAGCAGACACAA
TCGTTCACTCGAATCCTCGTTAACTACAGGTACCAGTTCTCATTCCCAAC
TAACAAGCAAACCAGATGTCTTGTTGAAAACGATCGTGACGTATGATGAC
CACAGATTGATGTGA
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Coding sequence (CDS) from alignment at tig00000204_pilon:32367..33781+

>Ggra729.t1 ID=Ggra729.t1|Name=Ggra729.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=879bp|location=Sequence derived from alignment at tig00000204_pilon:32367..33781+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCATGCGGCGCGCTGCGTACGCGGCGGGCATGATGATCCGCGA
GACGGGACAGGCGCTAGACCGTCTGGGCTGCAGCCTACAGGGCAAGTACG
CCTATGTTGAGCAGCTGAGCAGGCATCGTCAGATCATGAATCTTGGCGAC
TCCAAGCCCATCATTTCCACCCCCGCCTTCATTGCGCCTTCCGCGTCGCT
CATTGGCAACGTAGAGTTGTCGCCGTCGTCTTCCGTGTGGTATGGCGCCG
TGCTCCGTGCCGATAGCGCTCCCATACTAATTGGCCCACGCGCGTCCATT
GGCGATCGCGCCGTTGTTCGAGGCGCGTCCCATGTCGATGCCGACGCTAT
CGTCCACCCGGGCGCTGTCATCGATTCTGCTCAAGTTGGCGCGCGTGCCG
TTGTGGGCGCATCTGCTGTGGTTGCCCCCGGCGCCATTGTCGCAGAGCAA
TCTGTTCTGCGCGATGGCTCTTACTTGCCCGAAGGCACTTGCACATCACC
AGGTGAGATTTGGTCCGGCTCGCCGGCGCAGTGTGACCGTGCGCTCACGC
AAGATGAAATCAATGCTATAGCTACCAATGTCGAGGATGTGGTTACCCTG
GCAGGCGCACACGCAACTGAATGTGGCAAAACGCATGAACAGATTGAAGC
GGAGAAATTGAGACAGGGACTCATGGAGGAAAGATCTGAGGATTATAACA
GCCACCTAGGATTACTCGGCAGGGAAAAGGAGATTGTCGAGACTCAAGCT
ACTCTCATTGAGCAGGATCGTGAGGAACAGCGCAAGACATCGTTTCCAAT
TGGCTCTGCTGTAACCGCAACAATTAAAAATGTCTTGTTGAAAACGATCG
TGACGTATGATGACCACAGATTGATGTGA
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