Ggra7281.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7281.t1
Unique NameGgra7281.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000871_piloncontigtig00000871_pilon:620522..621019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ib00827.1.p
PFAMsFlavokinase,HAD_2
Max annot lvl35493|Streptophyta
KEGG rclassRC00002,RC00017
KEGG koko:K20884
KEGG ReactionR00548,R00549
KEGG Pathwayko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG ModuleM00125
GOsGO:0000287,GO:0003674,GO:0003824,GO:0003919,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0006915,GO:0006950,GO:0008150,GO:0008152,GO:0008219,GO:0008531,GO:0009611,GO:0009893,GO:0009987,GO:0012501,GO:0016301,GO:0016310,GO:0016311,GO:0016740,GO:0016772,GO:0016773,GO:0016779,GO:0016787,GO:0016788,GO:0016791,GO:0019222,GO:0033860,GO:0033864,GO:0042060,GO:0042578,GO:0043085,GO:0043167,GO:0043169,GO:0044093,GO:0044237,GO:0044424,GO:0044464,GO:0046872,GO:0048518,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0065007,GO:0065009,GO:0070566,GO:0072593
Evalue1.78e-28
EggNOG OGsCOG0196@1|root,COG0637@1|root,KOG2914@2759|Eukaryota,KOG3110@2759|Eukaryota,37K0I@33090|Viridiplantae,3G8YV@35493|Streptophyta,3KS8B@4447|Liliopsida,3I31X@38820|Poales
EC2.7.1.26,3.1.3.102
DescriptionRiboflavin kinase
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7281Ggra7281Gracilaria gracilis GNS1m malegenetig00000871_pilon 620522..621019 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7281.t1.start1Ggra7281.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000871_pilon 620522..620524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7281.t1.CDS1Ggra7281.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000871_pilon 620522..621019 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7281.t1.exon1Ggra7281.t1.exon1Gracilaria gracilis GNS1m maleexontig00000871_pilon 620522..621019 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7281.t1.stop1Ggra7281.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000871_pilon 621017..621019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7281.t1Ggra7281.t1Gracilaria gracilis GNS1m malepolypeptidetig00000871_pilon 620522..621019 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7281.t1 ID=Ggra7281.t1|Name=Ggra7281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=166bp
MCHSQLSFSSVQAIDWLPKPIAVSGLVQHGFGRGSRSLGTPTANLPGSLL
DNVNNASRDGVYLGFGRVPKFGDAVVKMVASIGYNVTFGDVKQRVLEAHL
MSDIFQTDFYGEEMRLCIVAFMRPELKFNSLQQLVEHIRNDISVANQALD
LPQAQPYRTHPLLLS*
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spliced messenger RNA

>Ggra7281.t1 ID=Ggra7281.t1|Name=Ggra7281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000871_pilon:620522..621019+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCACTCGCAGCTCAGCTTCTCGTCCGTTCAAGCCATAGATTGGCT
CCCCAAACCTATAGCCGTCAGCGGGCTCGTACAACACGGATTCGGCAGAG
GCAGTCGCTCTCTTGGAACCCCGACAGCTAATCTACCAGGCTCTCTGTTG
GACAATGTCAACAACGCCTCTCGAGACGGAGTCTATCTCGGCTTCGGCAG
AGTGCCCAAGTTTGGCGATGCAGTTGTTAAGATGGTCGCTAGTATTGGGT
ACAATGTAACGTTTGGTGATGTCAAACAACGTGTGTTGGAGGCTCATCTC
ATGTCTGATATCTTTCAAACCGATTTCTATGGTGAGGAGATGCGCCTCTG
TATCGTCGCCTTCATGAGACCAGAGCTCAAGTTCAATTCTTTGCAGCAAC
TTGTGGAGCACATCCGCAATGATATAAGCGTTGCTAATCAAGCACTGGAT
CTTCCACAAGCTCAGCCGTATAGAACACATCCCTTACTACTCAGCTGA
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protein sequence of Ggra7281.t1

>Ggra7281.t1 ID=Ggra7281.t1|Name=Ggra7281.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=166bp
MCHSQLSFSSVQAIDWLPKPIAVSGLVQHGFGRGSRSLGTPTANLPGSLL
DNVNNASRDGVYLGFGRVPKFGDAVVKMVASIGYNVTFGDVKQRVLEAHL
MSDIFQTDFYGEEMRLCIVAFMRPELKFNSLQQLVEHIRNDISVANQALD
LPQAQPYRTHPLLLS*
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mRNA from alignment at tig00000871_pilon:620522..621019+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7281.t1 ID=Ggra7281.t1|Name=Ggra7281.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000871_pilon:620522..621019+ (Gracilaria gracilis GNS1m male)
ATGTGTCACTCGCAGCTCAGCTTCTCGTCCGTTCAAGCCATAGATTGGCT
CCCCAAACCTATAGCCGTCAGCGGGCTCGTACAACACGGATTCGGCAGAG
GCAGTCGCTCTCTTGGAACCCCGACAGCTAATCTACCAGGCTCTCTGTTG
GACAATGTCAACAACGCCTCTCGAGACGGAGTCTATCTCGGCTTCGGCAG
AGTGCCCAAGTTTGGCGATGCAGTTGTTAAGATGGTCGCTAGTATTGGGT
ACAATGTAACGTTTGGTGATGTCAAACAACGTGTGTTGGAGGCTCATCTC
ATGTCTGATATCTTTCAAACCGATTTCTATGGTGAGGAGATGCGCCTCTG
TATCGTCGCCTTCATGAGACCAGAGCTCAAGTTCAATTCTTTGCAGCAAC
TTGTGGAGCACATCCGCAATGATATAAGCGTTGCTAATCAAGCACTGGAT
CTTCCACAAGCTCAGCCGTATAGAACACATCCCTTACTACTCAGCTGA
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Coding sequence (CDS) from alignment at tig00000871_pilon:620522..621019+

>Ggra7281.t1 ID=Ggra7281.t1|Name=Ggra7281.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00000871_pilon:620522..621019+ (Gracilaria gracilis GNS1m male)
ATGTGTCACTCGCAGCTCAGCTTCTCGTCCGTTCAAGCCATAGATTGGCT
CCCCAAACCTATAGCCGTCAGCGGGCTCGTACAACACGGATTCGGCAGAG
GCAGTCGCTCTCTTGGAACCCCGACAGCTAATCTACCAGGCTCTCTGTTG
GACAATGTCAACAACGCCTCTCGAGACGGAGTCTATCTCGGCTTCGGCAG
AGTGCCCAAGTTTGGCGATGCAGTTGTTAAGATGGTCGCTAGTATTGGGT
ACAATGTAACGTTTGGTGATGTCAAACAACGTGTGTTGGAGGCTCATCTC
ATGTCTGATATCTTTCAAACCGATTTCTATGGTGAGGAGATGCGCCTCTG
TATCGTCGCCTTCATGAGACCAGAGCTCAAGTTCAATTCTTTGCAGCAAC
TTGTGGAGCACATCCGCAATGATATAAGCGTTGCTAATCAAGCACTGGAT
CTTCCACAAGCTCAGCCGTATAGAACACATCCCTTACTACTCAGCTGA
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