Ggra728.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra728.t1
Unique NameGgra728.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000204_piloncontigtig00000204_pilon:30606..31889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000001338
Preferred nameOAT
PFAMsAminotran_3
Max annot lvl33208|Metazoa
KEGG rclassRC00006,RC00062
KEGG koko:K00819
KEGG ReactionR00667
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
GOsGO:0003008,GO:0003674,GO:0003824,GO:0003992,GO:0004587,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006520,GO:0006591,GO:0006807,GO:0007600,GO:0007601,GO:0008144,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009987,GO:0016043,GO:0016053,GO:0016740,GO:0016769,GO:0019752,GO:0019842,GO:0022607,GO:0030170,GO:0031974,GO:0031981,GO:0032501,GO:0034214,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0050877,GO:0050953,GO:0051259,GO:0065003,GO:0070013,GO:0070279,GO:0071704,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605
Evalue6.85e-185
EggNOG OGsCOG4992@1|root,KOG1402@2759|Eukaryota,38EEM@33154|Opisthokonta,3BC6G@33208|Metazoa,3CVEK@33213|Bilateria,489RC@7711|Chordata,48XYA@7742|Vertebrata,49TZ6@7898|Actinopterygii
EC2.6.1.13
DescriptionBelongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
COG categoryE
BRITEko00000,ko00001,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra728Ggra728Gracilaria gracilis GNS1m malegenetig00000204_pilon 30606..31889 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra728.t1.stop1Ggra728.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000204_pilon 30606..30608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra728.t1.CDS1Ggra728.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000204_pilon 30606..31889 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra728.t1.exon1Ggra728.t1.exon1Gracilaria gracilis GNS1m maleexontig00000204_pilon 30606..31889 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra728.t1.start1Ggra728.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000204_pilon 31887..31889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra728.t1Ggra728.t1Gracilaria gracilis GNS1m malepolypeptidetig00000204_pilon 30606..31889 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra728.t1 ID=Ggra728.t1|Name=Ggra728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MFRRSHMGEASQAAIDLEHNYGAHNYHPLPIVLSRAQGTRAWDVEGRQYL
DFLAAYSAVNQGHCHPRIVTALARQAARLTLTSRAFHNDLLGQFQESLCK
TFGFDRCLPMNTGVEGGETAIKLARRWGYDCKHIAPDRARVVFARGNFWG
RTIAAISSSCDPTSREGFGPFVPGYDLVDYDNLEQLERAVSKPDVCAFMV
EPIQGEAGVVIPKPGYLKAAKQICEKHNVLLIADEVQTGLGRTGRMLASE
HDDVKPDMVVLGKALSGGVYPVSAVLGSNEVLGLLRPGEHGSTYGGNPLA
CAVSMEALSVLEDENLCENAEKMGQVLRSALTKKGLPKKLVKEVRGVGLM
NAIEIEDVLGDQRTAWEVCLEMARNGVLAKPTHGHIIRLTPPLVINEGEV
EQACVVIREAVRTVGEMAANEGKSQTA*
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spliced messenger RNA

>Ggra728.t1 ID=Ggra728.t1|Name=Ggra728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000204_pilon:30606..31889- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCGTCGATCGCACATGGGCGAGGCTTCCCAAGCCGCCATCGACCT
CGAGCACAACTATGGCGCACACAACTATCACCCTCTTCCAATAGTTCTCT
CCCGTGCACAGGGCACCCGCGCCTGGGACGTTGAGGGCCGCCAGTACTTG
GATTTTCTCGCCGCTTATTCAGCAGTCAACCAGGGACATTGTCATCCACG
CATTGTAACAGCACTGGCAAGGCAAGCCGCTCGTCTCACCCTCACTTCGC
GTGCATTCCATAATGATTTGCTGGGGCAGTTCCAGGAAAGCCTTTGCAAG
ACGTTCGGATTTGATCGCTGCTTGCCCATGAATACTGGCGTGGAAGGCGG
TGAAACTGCTATCAAGCTTGCGAGAAGGTGGGGATATGATTGCAAGCATA
TTGCACCCGATCGTGCTCGCGTCGTATTTGCAAGAGGAAACTTCTGGGGT
CGGACTATTGCCGCCATTTCCTCCAGTTGTGACCCCACTTCCAGAGAGGG
CTTTGGGCCTTTTGTTCCGGGTTATGATCTTGTCGATTACGACAATCTTG
AACAGCTTGAACGCGCCGTATCAAAACCAGATGTGTGTGCTTTTATGGTT
GAACCCATCCAGGGCGAAGCCGGTGTTGTGATTCCCAAGCCCGGCTACTT
GAAAGCAGCCAAGCAGATATGTGAAAAGCATAACGTCCTTCTCATTGCGG
ATGAGGTCCAGACAGGACTGGGCAGAACTGGCCGAATGCTCGCTTCGGAA
CATGATGACGTCAAACCTGATATGGTTGTCCTTGGTAAGGCGCTATCTGG
CGGAGTTTACCCTGTATCGGCTGTCTTGGGCAGTAATGAGGTGCTAGGCT
TGTTGCGACCAGGCGAACATGGTTCCACGTATGGGGGTAATCCCCTTGCG
TGCGCAGTTAGCATGGAAGCTCTCAGCGTCCTTGAGGATGAGAATCTGTG
TGAAAACGCAGAAAAGATGGGCCAAGTCCTACGCTCCGCGCTTACAAAAA
AGGGACTTCCCAAGAAATTGGTCAAAGAAGTTAGGGGGGTCGGCCTCATG
AATGCTATCGAAATTGAAGATGTTCTTGGTGATCAGCGCACTGCATGGGA
AGTTTGCTTGGAGATGGCCAGAAATGGTGTACTAGCCAAGCCCACACATG
GACACATCATTCGACTGACTCCACCACTTGTCATCAATGAGGGGGAAGTG
GAGCAGGCTTGCGTCGTCATCAGAGAAGCCGTACGAACTGTGGGTGAAAT
GGCTGCAAATGAAGGCAAGTCACAGACCGCCTGA
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protein sequence of Ggra728.t1

>Ggra728.t1 ID=Ggra728.t1|Name=Ggra728.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MFRRSHMGEASQAAIDLEHNYGAHNYHPLPIVLSRAQGTRAWDVEGRQYL
DFLAAYSAVNQGHCHPRIVTALARQAARLTLTSRAFHNDLLGQFQESLCK
TFGFDRCLPMNTGVEGGETAIKLARRWGYDCKHIAPDRARVVFARGNFWG
RTIAAISSSCDPTSREGFGPFVPGYDLVDYDNLEQLERAVSKPDVCAFMV
EPIQGEAGVVIPKPGYLKAAKQICEKHNVLLIADEVQTGLGRTGRMLASE
HDDVKPDMVVLGKALSGGVYPVSAVLGSNEVLGLLRPGEHGSTYGGNPLA
CAVSMEALSVLEDENLCENAEKMGQVLRSALTKKGLPKKLVKEVRGVGLM
NAIEIEDVLGDQRTAWEVCLEMARNGVLAKPTHGHIIRLTPPLVINEGEV
EQACVVIREAVRTVGEMAANEGKSQTA*
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mRNA from alignment at tig00000204_pilon:30606..31889-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra728.t1 ID=Ggra728.t1|Name=Ggra728.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000204_pilon:30606..31889- (Gracilaria gracilis GNS1m male)
ATGTTTCGTCGATCGCACATGGGCGAGGCTTCCCAAGCCGCCATCGACCT
CGAGCACAACTATGGCGCACACAACTATCACCCTCTTCCAATAGTTCTCT
CCCGTGCACAGGGCACCCGCGCCTGGGACGTTGAGGGCCGCCAGTACTTG
GATTTTCTCGCCGCTTATTCAGCAGTCAACCAGGGACATTGTCATCCACG
CATTGTAACAGCACTGGCAAGGCAAGCCGCTCGTCTCACCCTCACTTCGC
GTGCATTCCATAATGATTTGCTGGGGCAGTTCCAGGAAAGCCTTTGCAAG
ACGTTCGGATTTGATCGCTGCTTGCCCATGAATACTGGCGTGGAAGGCGG
TGAAACTGCTATCAAGCTTGCGAGAAGGTGGGGATATGATTGCAAGCATA
TTGCACCCGATCGTGCTCGCGTCGTATTTGCAAGAGGAAACTTCTGGGGT
CGGACTATTGCCGCCATTTCCTCCAGTTGTGACCCCACTTCCAGAGAGGG
CTTTGGGCCTTTTGTTCCGGGTTATGATCTTGTCGATTACGACAATCTTG
AACAGCTTGAACGCGCCGTATCAAAACCAGATGTGTGTGCTTTTATGGTT
GAACCCATCCAGGGCGAAGCCGGTGTTGTGATTCCCAAGCCCGGCTACTT
GAAAGCAGCCAAGCAGATATGTGAAAAGCATAACGTCCTTCTCATTGCGG
ATGAGGTCCAGACAGGACTGGGCAGAACTGGCCGAATGCTCGCTTCGGAA
CATGATGACGTCAAACCTGATATGGTTGTCCTTGGTAAGGCGCTATCTGG
CGGAGTTTACCCTGTATCGGCTGTCTTGGGCAGTAATGAGGTGCTAGGCT
TGTTGCGACCAGGCGAACATGGTTCCACGTATGGGGGTAATCCCCTTGCG
TGCGCAGTTAGCATGGAAGCTCTCAGCGTCCTTGAGGATGAGAATCTGTG
TGAAAACGCAGAAAAGATGGGCCAAGTCCTACGCTCCGCGCTTACAAAAA
AGGGACTTCCCAAGAAATTGGTCAAAGAAGTTAGGGGGGTCGGCCTCATG
AATGCTATCGAAATTGAAGATGTTCTTGGTGATCAGCGCACTGCATGGGA
AGTTTGCTTGGAGATGGCCAGAAATGGTGTACTAGCCAAGCCCACACATG
GACACATCATTCGACTGACTCCACCACTTGTCATCAATGAGGGGGAAGTG
GAGCAGGCTTGCGTCGTCATCAGAGAAGCCGTACGAACTGTGGGTGAAAT
GGCTGCAAATGAAGGCAAGTCACAGACCGCCTGA
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Coding sequence (CDS) from alignment at tig00000204_pilon:30606..31889-

>Ggra728.t1 ID=Ggra728.t1|Name=Ggra728.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000204_pilon:30606..31889- (Gracilaria gracilis GNS1m male)
ATGTTTCGTCGATCGCACATGGGCGAGGCTTCCCAAGCCGCCATCGACCT
CGAGCACAACTATGGCGCACACAACTATCACCCTCTTCCAATAGTTCTCT
CCCGTGCACAGGGCACCCGCGCCTGGGACGTTGAGGGCCGCCAGTACTTG
GATTTTCTCGCCGCTTATTCAGCAGTCAACCAGGGACATTGTCATCCACG
CATTGTAACAGCACTGGCAAGGCAAGCCGCTCGTCTCACCCTCACTTCGC
GTGCATTCCATAATGATTTGCTGGGGCAGTTCCAGGAAAGCCTTTGCAAG
ACGTTCGGATTTGATCGCTGCTTGCCCATGAATACTGGCGTGGAAGGCGG
TGAAACTGCTATCAAGCTTGCGAGAAGGTGGGGATATGATTGCAAGCATA
TTGCACCCGATCGTGCTCGCGTCGTATTTGCAAGAGGAAACTTCTGGGGT
CGGACTATTGCCGCCATTTCCTCCAGTTGTGACCCCACTTCCAGAGAGGG
CTTTGGGCCTTTTGTTCCGGGTTATGATCTTGTCGATTACGACAATCTTG
AACAGCTTGAACGCGCCGTATCAAAACCAGATGTGTGTGCTTTTATGGTT
GAACCCATCCAGGGCGAAGCCGGTGTTGTGATTCCCAAGCCCGGCTACTT
GAAAGCAGCCAAGCAGATATGTGAAAAGCATAACGTCCTTCTCATTGCGG
ATGAGGTCCAGACAGGACTGGGCAGAACTGGCCGAATGCTCGCTTCGGAA
CATGATGACGTCAAACCTGATATGGTTGTCCTTGGTAAGGCGCTATCTGG
CGGAGTTTACCCTGTATCGGCTGTCTTGGGCAGTAATGAGGTGCTAGGCT
TGTTGCGACCAGGCGAACATGGTTCCACGTATGGGGGTAATCCCCTTGCG
TGCGCAGTTAGCATGGAAGCTCTCAGCGTCCTTGAGGATGAGAATCTGTG
TGAAAACGCAGAAAAGATGGGCCAAGTCCTACGCTCCGCGCTTACAAAAA
AGGGACTTCCCAAGAAATTGGTCAAAGAAGTTAGGGGGGTCGGCCTCATG
AATGCTATCGAAATTGAAGATGTTCTTGGTGATCAGCGCACTGCATGGGA
AGTTTGCTTGGAGATGGCCAGAAATGGTGTACTAGCCAAGCCCACACATG
GACACATCATTCGACTGACTCCACCACTTGTCATCAATGAGGGGGAAGTG
GAGCAGGCTTGCGTCGTCATCAGAGAAGCCGTACGAACTGTGGGTGAAAT
GGCTGCAAATGAAGGCAAGTCACAGACCGCCTGA
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